BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03280.2
Length=1744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896294 jgi|Araly1|896294|Al_scaffold_0005_260 2309 0.0
Ahg471563 jgi|Araly1|471563|fgenesh2_kg.1__1517__AT1G14020.1 950 0.0
> Ahg896294 jgi|Araly1|896294|Al_scaffold_0005_260
Length=1530
Score = 2309 bits (1250), Expect = 0.0
Identities = 1444/1535 (94%), Gaps = 23/1535 (1%)
Strand=Plus/Plus
Query 77 TAGATCGGAGAGTACTCTGATGCGGAGTGACTATA-AAG-CTCCTCCGAGTCAAGCTATT 134
|||||||||||||||||||||||||||||| | || ||| |||||| ||||||||| |||
Sbjct 9 TAGATCGGAGAGTACTCTGATGCGGAGTGA-T-TACAAGCCTCCTCAGAGTCAAGCAATT 66
Query 135 CCCAAAGCTCGATTACAAGTTTGGTTCTTTAGAGTTTGTTCTTGCATTTTGGTTTGGACT 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 CCCAAAGCTCGATTACAAGTTTGGTTCTTTAGAGTTTGTTCTTGCATTTTGGTTTGGACT 126
Query 195 TGTTTGATTCAGCTCTTTTGGCATTCCCAAATCTTCACTGGTTTAACCAATCACATTTCT 254
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 127 TGTTTGATTCAGCTCTTTTGGCATTCCCAAATCTTCACTGGTTTAACCAATCAGATTTCT 186
Query 255 AGATTCTCTCTCCCGGTTCAGTCAGTTCCATTACCTCCTCCTCTTCCTCCAAGGAATTAC 314
|||||||||||||| ||| | |||||||||||||| ||| | | |||||||||||| ||
Sbjct 187 AGATTCTCTCTCCCCGTTGAATCAGTTCCATTACCGCCT-C-C-TCCTCCAAGGAACTAT 243
Query 315 ACAAGTAATGGAATTTTACTAGTGTCCTGTAATGGCGGTTTGAATCAAATGCGTGCAGCG 374
||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 244 ACAAGTAATGGGATTTTACTAGTGTCTTGTAATGGTGGTTTGAATCAAATGCGTGCAGCG 303
Query 375 ATTTGTGATATGGTGACTGTTGCTAGGCTATTGAATTTGACTCTTGTTGTTCCTGAGCTT 434
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GTTTGTGATATGGTTACTGTTGCTAGGCTATTGAATTTGACTCTTGTTGTTCCTGAGCTT 363
Query 435 GATAAAAAATCATTCTGGGCTGATACAAGGTATATGTTTG-TGTCTC--ATGTCAATG-A 490
||||| ||||| |||||||||||| ||||||||||||||| | || | | | || | |
Sbjct 364 GATAAGAAATCTTTCTGGGCTGATCCAAGGTATATGTTTGTTTTCGCGGGTTTTAA-GAA 422
Query 491 -TCCTACAAGATTTG--TTTGTAGTTTAAAGCATTCTTTTGTTTCT-TCCTTTTACAGTG 546
| || || | | | ||||||| ||||||| || || |||||| | |||||||||||
Sbjct 423 GT-CT-CATG--TCGATTTTGTAG-CTAAAGCAATC-TTGGTTTCTGT-CTTTTACAGTG 475
Query 547 ACTTTGAGGACATTTTTGATATAAAGCATTTCATTGATTCGTTAAGAGATGAAGTTAGGA 606
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 476 ACTTTGAGGACATTTTTGATGTAAAGCATTTCATTGATTCGTTAAGAGATGAAGTTAGGA 535
Query 607 TCATAAGGAGACTTCCTAAACGGTATAGTAAGAAGTATGGATTCAAATTGTTCGAAATGC 666
|||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 536 TCATAAGGAGACTTCCAAAACGATATAGTAAGAAGTATGGATACAAATTGTTCGAAATGC 595
Query 667 CGCCTGTGAGCTGGTCCAACGACAAATATTACTTGCAACAGGTATTGCCGCGGTTTAGTA 726
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 596 CGCCTGTGAGCTGGTCCAACGACAAATATTACTTGCAACAGGTATTGCCGCGATTCAGTA 655
Query 727 AACGTAAAGTTATACATTTCGTTCGGAGTGATACGCGATTGGCGAACAATGGTCTTTCTC 786
|||||||||||||||||||| || ||||||||||||||||||| ||||| ||||||||||
Sbjct 656 AACGTAAAGTTATACATTTCCTTAGGAGTGATACGCGATTGGCTAACAACGGTCTTTCTC 715
Query 787 TTGACCTTCAAAGGCTGAGATGCCGAGTGAATTTCCAAGGACTGAGATTCACTCCACGGA 846
|||||||||||||||||||||| ||||| ||||| |||||| ||||||||||||| | ||
Sbjct 716 TTGACCTTCAAAGGCTGAGATGTCGAGTTAATTTTCAAGGATTGAGATTCACTCCGCCGA 775
Query 847 TTGAGGCTTTGGGATCAAAGTTAGTTCGGATTCTTCAACAAAGAGGGTCTTTTGTGGCTT 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TTGAGGCTTTGGGATCAAAGTTAGTTCGGATTCTTCAACAAAGAGGGTCTTTTGTGGCTT 835
Query 907 TGCATTTGAGATATGAGATGGACATGTTGGCTTTCTCTGGTTGCACTCATGGTTGTACCG 966
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 836 TGCATTTAAGATATGAGATGGACATGTTGGCTTTCTCTGGTTGCACACATGGTTGTACCG 895
Query 967 ATGAAGAAGCTGAAGAACTCAAAAAGATGAGGTATGCATATCCATGGTGGAGAGAGAAAG 1026
| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 896 AGGAAGAAGCCGAAGAACTCAAAAAAATGAGGTATGCATATCCATGGTGGAGAGAGAAAG 955
Query 1027 AGATAGTTTCAGAAGAAAGGAGAGTGCAAGGACTGTGTCCTTTGACACCGGAGGAGGCGG 1086
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 956 AGATAGTTTCAGAAGAAAGGAGAGTGCAAGGACTGTGTCCCTTGACACCGGAGGAGGCGG 1015
Query 1087 TTTTGGTTCTTAAAGCATTGGGGTTTCAAAAGGATACACAGATATACATTGCAGCTGGTG 1146
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1016 TTTTGGTCCTTAAAGCATTGGGGTTTCAAAAGGATACACAAATATACATTGCAGCTGGTG 1075
Query 1147 AGATTTTTGGTGGTGCAAAGAGATTAGCCCTTCTAAAGGAATCATTTCCACGAATTGTGA 1206
|||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1076 AGATTTATGGTGGTGCAAAGAGATTAGCTCTTCTGAAGGAATCATTTCCACGAATTGTGA 1135
Query 1207 AAAAGGAAATGCTATTAGATCCAACAGAATTGCAACAGTTTCAGAACCATTCATCTCAAA 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1136 AAAAGGAAATGCTATTAGATCCAACAGAATTGCAACAGTTTCAGAACCATTCATCACAAA 1195
Query 1267 TGGCAGCTCTAGATTTCATAGTATCTGTAGCCAGCAACACTTTTATTCCTACCTATTATG 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TGGCAGCTCTAGATTTCATAGTATCTGTAGCCAGCAACACTTTTATTCCTACCTATTATG 1255
Query 1327 GAAACATGGCAAAAGTTGTCGAAGGTCATCGGAGGTACCTTGGGTTTAAGAAAACAATCT 1386
||||||||||||||||||| ||||||||||| || || || |||||||||||||||||||
Sbjct 1256 GAAACATGGCAAAAGTTGTTGAAGGTCATCGAAGATATCTCGGGTTTAAGAAAACAATCT 1315
Query 1387 TGCTAGACCGGAAGAGACTTGTGGAGCTTTTAGACTTGCATAACAACAAAACGCTCTCTT 1446
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1316 TGCTAGACCGGAAGAGACTTGTGGAGCTTTTGGACTTGCATTACAACAAAACGCTCTCTT 1375
Query 1447 GGGATCAGTTTGCAGTAGCTGTCAAGGATGCCCATCAAGGACGACGAATGGGAGAACCAA 1506
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1376 GGGATCAGTTTGCAGTAGCTGTCAAGGAAACTCATCAAGGACGACGAATGGGAGAACCAA 1435
Query 1507 CACATCGGAAAGTTATCTCCGTTAGACCGAAGGAAGAAGATTACTTCTATGCCAATCCTC 1566
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1436 CACATCGGAAAGTTATCTCCGATAGACCGAAGGAAGAAGATTACTTCTATGCCAATCCTC 1495
Query 1567 AAGAATGTATCAGTTAAAATGATATAGATCACTAA 1601
|||||||||||||| |||||||||||| |||||||
Sbjct 1496 AAGAATGTATCAGTGAAAATGATATAGTTCACTAA 1530
> Ahg471563 jgi|Araly1|471563|fgenesh2_kg.1__1517__AT1G14020.1
Length=1898
Score = 950 bits (514), Expect = 0.0
Identities = 875/1045 (84%), Gaps = 41/1045 (4%)
Strand=Plus/Plus
Query 549 TTTGAGGACATTTTTGATAT-AAAGCATTTCATTGATTCGTTAAGAGATGAAGTTAGGAT 607
|||||||| ||||||||| | | | |||||||||||||| || |||||||||||| ||||
Sbjct 560 TTTGAGGATATTTTTGATGTGACA-CATTTCATTGATTCATTGAGAGATGAAGTTCGGAT 618
Query 608 CATAAGGAGACTTCCTAAACGGTATAGTAA-GAAGTATGGAT-TCAAATTGTTCGAAATG 665
|||||| |||||| ||||||| || || ||||||||||| ||||| |||||||||||
Sbjct 619 TTTAAGGAAACTTCCAAAACGGTTTA-CAAGGAAGTATGGATATCAAA-TGTTCGAAATG 676
Query 666 CCGCCTGTGAGCTGGTCCAACGACAAATATTACTTGCAA-CAGGTATTGCCGCGGTTT-A 723
|| |||||||||||||| | || |||||||||||| || ||| ||||||| | ||| |
Sbjct 677 CCTCCTGTGAGCTGGTCTGATGAAAAATATTACTTG-AAGCAGATATTGCCTC-TTTTCA 734
Query 724 GTAAACGTAAAGTTATACATTTCGTTCGGAGTGATACGCGATTGGCGAACAATGGTCTTT 783
| |||| |||||||||||| ||| | ||| |||||| || |||| ||||||||||||
Sbjct 735 GCAAACATAAAGTTATACACTTCAATAGGACTGATACCCGCCTGGCAAACAATGGTCTTC 794
Query 784 CTCTTGAC-CTTCAAAGGCTGAGATGCCGAGTGAA-TTTCCAAGGACTGAGA-TTCACTC 840
| || | | || || |||| || ||||| ||||| ||| || ||||| | | |||||||
Sbjct 795 CGCTCG-CACTCCAGTGGCTCAGGTGCCGGGTGAACTTT-CAGGGACT-AAAGTTCACTC 851
Query 841 CACGGATTGAGGCTTTGGGATCAAAGTTAGTTCGGATTCTTCAACAAAGAGGGTCTTTTG 900
||| | |||||||||||||| | ||||||||||||||||| |||||||||||| | ||||
Sbjct 852 CACAGCTTGAGGCTTTGGGAGCTAAGTTAGTTCGGATTCTACAACAAAGAGGGCCATTTG 911
Query 901 TGGCTTTGCATTTGAGATATGAGATGGACATGTTGGCTTTCTCTGGTTGCACTCATGGTT 960
||| ||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 912 TGGTTTTGCATCTGAGATATGAGATGGACATGTTAGCTTTCTCTGGCTGCACTCATGGTT 971
Query 961 GTACCGATGAAGAAGCTGAAGAACTCAAAAAGATGAGGTATGCATATCCATGGTGGAGAG 1020
| || || |||||||||||||| || |||||||||||||| ||||||| ||||||||||
Sbjct 972 GCACTGAGGAAGAAGCTGAAGAGCTAAAAAAGATGAGGTACACATATCCCTGGTGGAGAG 1031
Query 1021 AGAAAGAGATAGTTTCAGAAGAAAGGAGAGTGCAAGGACTGTGTCCTTTGACACCGGAGG 1080
|||| |||||||| ||||| || ||||||| |||||| |||||||||||||| || ||||
Sbjct 1032 AGAAGGAGATAGTCTCAGAGGAGAGGAGAGCGCAAGGGCTGTGTCCTTTGACGCCAGAGG 1091
Query 1081 AGGCGGTTTTGGTTCTT-AAAGCATTGGGGTTTC-A-AAAGGATACACAGATATACATTG 1137
||| || |||||| || |||||||| ||| ||| | ||| ||||||||||||||||||
Sbjct 1092 AGGTGGCCTTGGTT-TTAAAAGCATT-GGGATTCGAGAAA-AATACACAGATATACATTG 1148
Query 1138 CAGCTGGTGAGATTTTTGGTGGTGCAA--AGAGATTAGCCCTTCTAAAGGAAT-CATTTC 1194
||||||||||||||| ||| || || | | ||| || | || ||| |||| |||| |
Sbjct 1149 CAGCTGGTGAGATTTATGG-GG-GCGAGCATAGACTATCAGTTTTAA-GGAAAGCATTCC 1205
Query 1195 C-ACGAATTGTGAAA-AAGGAAATGCTATTAGA-TCCAACAGAATTGCAACAGTTTCAGA 1251
| | ||||||| ||| |||||||||||||| || || ||| || | |||||||||||||
Sbjct 1206 CGA-GAATTGT-AAAGAAGGAAATGCTATTGGAGTC-AACGGAGCTACAACAGTTTCAGA 1262
Query 1252 ACCATTCATCTCAAATGGCAGCTCTAGATTTCATAGTATCTGTAGCCAGCAACACTTTTA 1311
||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| ||||
Sbjct 1263 ACCATTCGTCTCAAATGGCTGCTCTAGATTTCATGGTATCTGTGGCCAGCAACACATTTA 1322
Query 1312 TTCCTACCTATTATGGAAACATGGCAAAAGTTGTCGAAGGTCATCGGAGGTACCTTGGGT 1371
||||||| ||| ||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 1323 TTCCTACGTATGATGGAAACATGGCAAAAGTCGTGGAAGGTCATCGGAGATACCTTGGGT 1382
Query 1372 TTAAGAAAACAATCTTGCTAGACCGGAAGAGACTTGTGGAGCTTTTAGACTTGCATAACA 1431
|||||| |||||| |||| ||||| |||||||| |||||||| ||||||| ||| |||
Sbjct 1383 ATAAGAAGACAATCCTGCTTGACCGTAAGAGACTCGTGGAGCTACTAGACTTACATCACA 1442
Query 1432 ACAAAACGCTCTCTTGGGATCAGTTTGCAGTAGCTGTCAAGGATGCCCATCA-AGGACGA 1490
|||| || ||| | |||||||||||||||||||| |||||||| |||||| | || ||||
Sbjct 1443 ACAAGACCCTCACGTGGGATCAGTTTGCAGTAGCCGTCAAGGAAGCCCATGAGAG-ACGA 1501
Query 1491 CGAATGGGAGAACCAACACATCGGAA-AGTTATCTCCGTTAGACCGAAGGAAGAAGATTA 1549
| | || || ||| |||||||| || ||| ||||| | | ||| ||||| ||||||||
Sbjct 1502 -GCA-GG-AGCACCTACACATCG-AAGAGTAATCTCTGACAAACCTAAGGAGGAAGATTA 1557
Query 1550 CTTCTATGCCAATCCTCAAGAATGT 1574
|||||| || || ||||||||||||
Sbjct 1558 CTTCTACGCAAACCCTCAAGAATGT 1582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65439040910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5