BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03290.1
Length=814
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322631 jgi|Araly1|322631|fgenesh1_pm.C_scaffold_5000175 1016 0.0
> Ahg322631 jgi|Araly1|322631|fgenesh1_pm.C_scaffold_5000175
Length=639
Score = 1016 bits (550), Expect = 0.0
Identities = 612/642 (95%), Gaps = 3/642 (0%)
Strand=Plus/Plus
Query 1 ATGGATCTTTGTCGAAGCTCGATTTTGCTTTTGATCATTGCGTTGTTATCTCCTAGGACA 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGATCTTCGTCGAAGCTCGATTTTGCTTTTGATCATTGCGTTGTTATCTCCCAGGACA 60
Query 61 CTATCAATGCGTTACGAACTAAAGTCTTCGAAAACGAAATGTATCGGAGAGGAGATTCAC 120
||||||||||||||||| ||||||||||||| |||||| || ||||||||||| ||||||
Sbjct 61 CTATCAATGCGTTACGAGCTAAAGTCTTCGACAACGAAGTGCATCGGAGAGGATATTCAC 120
Query 121 GAAAACGCCATGTCCATTGGTAAATACTTCATCGTAAACCCTAACGAAGATAATCATCCT 180
|||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 GAAAACTCCATGTCCGTTGGTAAATACTTCATCGTAAACCCTAACGAAG---ATCATCCT 177
Query 181 CTTCCTGATTCTCACAAGATCATCGTCAAGGTGATGCCACCACAAGGGAAGAATTTGCAC 240
||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 178 CTTCCTGCTTCTCATAAGATCATCGTCAAGGTGATGCCGCCACAAGGGAAGAATTTGCAC 237
Query 241 GAAGCCGATAAGGTAGAGGCTGGTCAGTTCTCGTTTACTGCTTATGAAAATGGGAGTTAC 300
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GAAGCTGATAATGTAGAGGCTGGTCAGTTCTCGTTTACTGCTTATGAAAATGGGAGTTAT 297
Query 301 GTAGCGTGCATCACTGCCATTGATTATAAGCCGGAGACCACGTTGACTATTGATTTTGAT 360
|||||||||||||| ||| ||||||||||||||||||| |||||||| ||||||||||||
Sbjct 298 GTAGCGTGCATCACAGCCGTTGATTATAAGCCGGAGACTACGTTGACCATTGATTTTGAT 357
Query 361 TGGAAGACTGGTGTTCACTCTAAGGAGTGGACCAATGTGGCTAAGAAGAGTCAAGTTGAT 420
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 358 TGGAAGACTGGTGTTCACTCTAAGGAATGGACCAATGTGGCTAAGAAGAGTCAAGTTGTT 417
Query 421 ATGATGGAGTATCAGGTTAAGACCTTGATGGATACTGTTATTTCCATACATGAGGAGATG 480
|||||||||||||| ||||||||||||||||| ||||||| |||||| ||||||||||||
Sbjct 418 ATGATGGAGTATCAAGTTAAGACCTTGATGGACACTGTTAATTCCATCCATGAGGAGATG 477
Query 481 TATTATCTTCGTGAAAGGGAAGAGGAAATGCAAGAACTGAATAGATCCACAAACTCGAAG 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TATTATCTTCGTGAAAGAGAAGAGGAAATGCAAGAACTGAATAGATCCACAAACTCGAAG 537
Query 541 ATGGCGTGGTTGAGTTTCGGGTCGCTTGTGGTTTGTTTATCGGTGGCTGGTCTACAATTC 600
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATGGCGTGGCTGAGTTTCGGGTCGCTTGTGGTTTGTTTATCGGTGGCTGGTCTACAATTC 597
Query 601 TGGCACTTGAAAACTTTCTTTGAGAAAAAGAAACTCATCTAA 642
||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TGGCACTTGAAAACTTTCTTTGAGAAAAAGAAACTCATCTAA 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30078981513
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5