BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03300.1
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896296 jgi|Araly1|896296|Al_scaffold_0005_262 876 0.0
> Ahg896296 jgi|Araly1|896296|Al_scaffold_0005_262
Length=612
Score = 876 bits (474), Expect = 0.0
Identities = 568/614 (93%), Gaps = 4/614 (1%)
Strand=Plus/Plus
Query 1 ATGACATTCTTCTCTCCCACTCAGGTGTTTTTGAACTACAGGGGAGAACAACTGCGTCGC 60
||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
Sbjct 1 ATGACATTCTTCTCTCCCACTCAGGTGTTCTTGAACTACCGGGGAGAGCAACTGCGTTAC 60
Query 61 AGCTTCGTGAGCCACCTCATTGATGCCTTTGAAAGGAATGAGATCAACTTCTTCGTAGAC 120
|||||||||||||||||| ||||||| ||||||||||||||| | |||||||||||||||
Sbjct 61 AGCTTCGTGAGCCACCTCGTTGATGCTTTTGAAAGGAATGAGGTAAACTTCTTCGTAGAC 120
Query 121 AAATACGAACAGAGAGGCAAAGACCTCAAAAATCTCTTTCTTAGGATCCAAGAGTCGAAG 180
|||||||| |||||||||||||||||||||||||||||| | |||||| |||| |||| |
Sbjct 121 AAATACGAGCAGAGAGGCAAAGACCTCAAAAATCTCTTTGTAAGGATCGAAGAATCGAGG 180
Query 181 ATCGCGCTTGCCATCTTCTCAACCAGATACACGGAGTCAAGCTGGTGTATGGATGAGTTG 240
|||||||| ||||||||||| || |||||||| ||||| |||||||||||||||||||||
Sbjct 181 ATCGCGCTGGCCATCTTCTCTACGAGATACACCGAGTCGAGCTGGTGTATGGATGAGTTG 240
Query 241 GTGAAGATAAAGAAACTTGCTGATAAAAGAAAGCTCCATGTCATTCCAATTTTCTACAAG 300
||||| || ||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 241 GTGAAAATGAAGAAACTTGCGGATAAAAGAAAGCTCCATGTTATTCCAATCTTCTACAAA 300
Query 301 GTGAAGGTAGAAGACGTTCGAAAACAGACAGGTGAGTTTGGTGACAACTTCTGGACGCTG 360
||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||||||
Sbjct 301 GTGAAGGTAGATGACGTTAGAAAACAGACAGGTGAGTTTGGCGACAACTTTTGGACGCTC 360
Query 361 GCAAAGGTTTCAAGTGGTGATCAGATCAAGAAATGGAAAGAAGCCTTGGAATGTATCCCC 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 GCAAAGGTTTCAAGTGGAGATCAGATCAAGAAATGGAAAGAAGCCTTGGAATGTATCTCC 420
Query 421 AACAAGATGGGTTTGTCGTTGGGAGACAAGAG-TGATGAAGCAGATTTCATCAAGGAAGT 479
|||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||||
Sbjct 421 AACAAGATGGGTTTGTCGTTGGGAGACAAGAGCT-CTGAAGCCGATTTTGTCAAGGAAGT 479
Query 480 TGTTAAGGCGGTTCAGTGTGTTGTAGCA-ACGATTGGACTTGAGGAAGAAGAGAATCATT 538
|||||||||||||||| ||||||||||| | |||||||||||||||| |||||||||||
Sbjct 480 TGTTAAGGCGGTTCAGAGTGTTGTAGCAGTC-ATTGGACTTGAGGAAGGAGAGAATCATT 538
Query 539 TTGGGAAAAAGAAGAGAAAGGATTGCAAATGTGAGCTTCCTGATTTGAAGAAAAGCAGAA 598
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 539 TTGGGAAAAAGAAGAGAAAGGATTGCAAATGTGAACTTCCTGATTTCAAGAAAAGCAGAA 598
Query 599 CCAAAAAGTTGTGA 612
||||||||||||||
Sbjct 599 CCAAAAAGTTGTGA 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22378152279
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5