BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03310.1
Length=845
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936117 jgi|Araly1|936117|scaffold_500308.1 821 0.0
> Ahg936117 jgi|Araly1|936117|scaffold_500308.1
Length=580
Score = 821 bits (444), Expect = 0.0
Identities = 537/579 (93%), Gaps = 17/579 (3%)
Strand=Plus/Plus
Query 78 AGAACATTATCCAAATTATGAACAGAGCAGAGGCAGAGC---AAGAAGAAGAATTCAGTG 134
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 4 AGAACATTATCCAAATTATGAACAGAACAGAGGCAGAGCAAGAAGAAGAAGAATTCAGTG 63
Query 135 AATGGGTAGTTGTTATACAAACCTCACCCAAATCCCCACGTA-CTGACGCATCTACCCCT 193
||||||||| || |||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 64 AATGGGTAG-TG--ATACAAACCTCACCCAAATCCCCACG-ATCTGACGCATCTACCCCT 119
Query 194 CCAAACTCACCGATATTACAACCAAGCCACCGCCGTGAAAATCCAACGATCAAC------ 247
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 120 CCAAACTCACCGATATTACAACCAAGCCATCGCCGTGAAAATCCAACGACCAACGATGAT 179
Query 248 ---GACGATGATGAAGATTCTGTTGTCCCCTCCACCGTGAATCTTTGGCTTCCGTGGCGA 304
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GATGATGATGATGAAGATTCTGTTGTCCCCTCCACCGTGAATCTTTGGCTTCCGTGGCGC 239
Query 305 GTGATTGAGACTACCAAGAAGCGATTAATCAAGAACTCAGTGTGCATCTTTCAGGCCGTC 364
|||||||| |||||||| |||||||| |||||||||||||||||| ||||||||||||||
Sbjct 240 GTGATTGACACTACCAAAAAGCGATTGATCAAGAACTCAGTGTGCTTCTTTCAGGCCGTC 299
Query 365 GAAAGGGTGCGTTGTAGTTACCTAACTCGTAAAAGGGTATTTTGGTCATTAACAATCATT 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAAAGGGTGCGTTGTAGTTACCTAACTCGTAAAAGGGTATTTTGGTCATTAACAATCATT 359
Query 425 GGAGGCTTCTCGTTGGTCTTGAGCCTTGTTTATGTGAAGCTCGTGAGATGGTGGAGACGG 484
||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 360 GGAGGCTTCTCGTTGGTTTTGAGCCTTGTCTATGTGAAGCTCGTGAGGTGGTGGAGACGA 419
Query 485 CTACATGAAGAGAAACTGAGATTTCTGCTTCTTCTCCTCAGAGAGAAAGATCAGAGAATA 544
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| ||||
Sbjct 420 CTACATGAAGAGAAGCTGAGATTTCTCCTTCTTCTGCTCAGAGAGAAAGATCAGAAAATA 479
Query 545 AAGGAACTTATGGTTGAAATTGGGAGATTGAACGAGTTGTTATCATCACGACGCAGAGTT 604
|||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 480 AAGGAACTAATGGTTGAAATTGGGAGATTGAACGAGTTGTTATTGTCAAGACGCAGAGTT 539
Query 605 CGAGTGGTTCGAATCGTGTAACGAGACGAGTGTATATAT 643
||||||||||||||||| | ||||||||| | |||||||
Sbjct 540 CGAGTGGTTCGAATCGTCTGACGAGACGAATATATATAT 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31260791940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5