BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03320.1
Length=306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484240 jgi|Araly1|484240|fgenesh2_kg.5__232__AT2G03320.1 392 7e-109
> Ahg484240 jgi|Araly1|484240|fgenesh2_kg.5__232__AT2G03320.1
Length=270
Score = 392 bits (212), Expect = 7e-109
Identities = 254/273 (93%), Gaps = 8/273 (3%)
Strand=Plus/Plus
Query 36 GCATGTTTATTATTTCGTGCTGTGCATGGCTTCAAAAGTTTCTGAAAAACTTAGCTTCCG 95
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2 GCATGTTTGTTATTTCGTGCTGTACATGGCTTCAAAAGTTTCTGAAAAACTTAGCTTCCG 61
Query 96 AAAAGCAGCAGAGGAACCAAACCTTCCTATTGCTGCTGCTACTACTCTGATATCACCTC- 154
|||| |||||||||||||| ||||||||||||||||| ||||| | ||||||||| |
Sbjct 62 AAAATCAGCAGAGGAACCATACCTTCCTATTGCTGCTACTACT--T-TGATATCACATGG 118
Query 155 -A-AGGTCGAGTAGACTTTGTCTTTATGGACAATGAAGCACAAGAGATAAGAAATGTTTC 212
| |||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 119 TACAGGTAGAGTAGACTTTGTCTTTGTGGACAATGAAGCACAAGAGATAATAAATGTTTC 178
Query 213 GCCGACATCACAAGAACTTCCATCTTCTTCTACTACTTCTATTTCACATAGTAATGAACG 272
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 179 GCCGACATCACAAGAACTTCCATCTTCTACTACTACTTCTATTTCACATAGTAATGAACG 238
Query 273 ATCTAATTC-TCTACGATCTATCGTTATTCAGT 304
||||||||| | |||||||||||||||||||||
Sbjct 239 ATCTAATTCGT-TACGATCTATCGTTATTCAGT 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10759876098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5