BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03340.1
Length=2128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484242 jgi|Araly1|484242|fgenesh2_kg.5__234__AT2G03340.1 2542 0.0
Ahg916062 jgi|Araly1|916062|Al_scaffold_0008_813 200 3e-50
> Ahg484242 jgi|Araly1|484242|fgenesh2_kg.5__234__AT2G03340.1
Length=1909
Score = 2542 bits (1376), Expect = 0.0
Identities = 1574/1668 (94%), Gaps = 20/1668 (1%)
Strand=Plus/Plus
Query 159 TGTGAGTTGGGTTTGTTAAAGTTTTATCCTTTTTGTTCTCAAAATCAAGAATCGATGGCG 218
|||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct 104 TGTGAGTTGGGTTTGTTAAAGTTTTATCCTCTTTGTTCTCAAAATC-GGGATCGATGGCG 162
Query 219 GAGAAGGAAGAAAAAGAACCATCGAAGTTAAAATCATCCACCGGAGTTTCACGGCCAACG 278
||||| |||||||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 163 GAGAAAGAAGAAAAAGAACCGTCAAAGTTAAAATCATCCACCGGAGTTACACGGCCAACG 222
Query 279 ATTTCACTACCTCCTCGACCGTTTGGTGAAATGTTTTTTAGCGGTGGCGTTGGATTTAGT 338
|| |||| ||||||||||||||| |||||||||||||||||||||| ||||| ||||||
Sbjct 223 ATCGCACTTCCTCCTCGACCGTTTAGTGAAATGTTTTTTAGCGGTGGTGTTGGGTTTAGT 282
Query 339 CCTGGACCAATGACTCTCGTCTCAAATTTATTCTCTGATCCTGATGAGTTCAAGTCTTTC 398
||||| || |||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 283 CCTGGTCCTATGACTCTTGTCTCAAATTTGTTCTCTGATCCTGATGAATTCAAGTCTTTC 342
Query 399 TCTCAGCTT-TTAGCTGGAGCTATGGCTTCTCCGGCGGCAGCTGCTGTTGCCGCCGCTGC 457
||||| ||| || || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 343 TCTCAACTTCTT-GCCGGAGCTATGGCTTCTCCGGCTGCAGCTGCTGTTGCCGCCGCTGC 401
Query 458 TGTGGTTGCTA---CTGCTCATCATCAGACACCTGTGAGCTCTGTCGGTGATGGCGGTGG 514
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 TGTTGTTGCTACTGCTGCTCATCATCAGACACCTGTGAGCTCTGTCGGTGATGGCGGTGG 461
Query 515 AAGCGGTGGTGATGTTGACCCGAGGTTTAAGCAGAGTAGACCAACGGGATTGATGATAAC 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 462 AAGCGGTGGTGATGTTGACCCGAGGTTTAAGCAGAGTAGACCAACGGGATTGATGATTAC 521
Query 575 TCAACCACCGGGGATGTTTACTGTACCGCCGGGGTTAAGTCCGGCTACTCTTTTGGATTC 634
||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 522 TCAGCCACCGGGGATGTTTACTGTACCGCCGGGATTAAGTCCGGCGACGCTTTTGGATTC 581
Query 635 TCCGAGCTTCTTTGGTCTTTTTTCACCTCTTCAGGGAACATTTGGTATGACACATCAACA 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 TCCGAGCTTCTTTGGTCTTTTTTCACCTCTTCAGGGAACATTTGGTATGACACATCAACA 641
Query 695 AGCTTTAGCACAAGTCACTGCACAAGCAGTTCAAGGCAATAATGTTCATATGCAGCAATC 754
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 AGCTTTAGCACAAGTCACTGCACAAGCAGTTCAAGGCAATAATGTTCATATGCAGCAAT- 700
Query 755 ACAACAATCTGAATATCCTTCTTCTacacaacaacaacaacaacaacaacaacaaGCTTC 814
| |||||||||||||||||| || | || ||||||||||||||||| | || ||||
Sbjct 701 -C-ACAATCTGAATATCCTTC--CT---CTAC-ACAACAACAACAACAAC-A-AA-CTTC 749
Query 815 ATTGACTGAGATTCCATCATTTTCTTCTGCACCTAGGTCTCAGATTCGAGCCTCGGTTCA 874
||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 750 ATTGACTGAGATTCCGTCATTTTCTTCTGGACCTCGGTCTCAGATTCGAGCCTCGGTTCA 809
Query 875 AGAAACATCGCAGGGTCAGAGAGAGACTTCGGAAATATCTGTCTTTGAGCATCGGTCACA 934
||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 810 AGACACATCGCAGGGACAGAGAGAAACTTCGGAGATATCTGTCTTTGAGCATCGGTCACA 869
Query 935 GCCTCAAAATGCTGACAAACCAGCTGATGATGGATACAACTGGCGGAAATATGGGCAGAA 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 GCCTCAAAATGCTGACAAACCAGCTGATGATGGATACAACTGGCGGAAATATGGGCAGAA 929
Query 995 GCAAGTGAAGGGGAGCGATTTTCCTCGGAGTTATTACAAATGTACGCATCCAGCT-TGTC 1053
||||||||| |||||||||||||| |||||||||||||||||||||||||||| | ||||
Sbjct 930 GCAAGTGAAAGGGAGCGATTTTCCGCGGAGTTATTACAAATGTACGCATCCAG-TGTGTC 988
Query 1054 CTGTCAAGAAGAAAGTGGAGAGGTCACTCGATGGACAAGTAACGGAAATCATCTACAAGG 1113
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 CTGTCAAGAAGAAGGTGGAGAGGTCACTCGATGGACAAGTAACGGAAATCATCTACAAGG 1048
Query 1114 GTCAACACAATCATGAGCTTCCTCAAAAGCGCGGTAACAATAACGGGAGTTGTAAAAGTT 1173
|||| ||||||||||| ||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1049 GTCAGCACAATCATGAACTTCCTCAAAAGCGCGGTAACAATAACGGGAATTCTAAAAGTT 1108
Query 1174 CTGATATTGCAAATCAGTTTCAAACAAGTAATAGCAGTCTCAACAAGAGTAAGAGGGACC 1233
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1109 CTGATATTGCAACTCAGTTTCAAACCAGTAATAGCAGTCTCAACAAGAGTAAGAGGGACC 1168
Query 1234 AGGAAACAAGCCAAGTTACAACAACAGAGCAGATGTCTGAAGCAAGTGATAGCGAGGAGG 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 AGGAAACAAGCCAAGTTACAACAACAGAGCAGATGTCTGAAGCAAGTGATAGCGAGGAGG 1228
Query 1294 TTGGGAATGCAGAGACTAGTGTGGGAGAAAGACATGAGGATGAGCCTGATCCCAAGCGAA 1353
|||| ||||||||||||| ||||||||||| ||| | |||||||||||||||||| |||
Sbjct 1229 TTGGTAATGCAGAGACTACTGTGGGAGAAAAACACAAAGATGAGCCTGATCCCAAGAGAA 1288
Query 1354 GAAATACAGAAGTTCGGGTTTCAGAACCAGTTGCTTCATCGCATAGAACTGTGACAGAGC 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 GAAATACAGAAGTTCGGGTTTCAGAACCAGTTGCTTCATCGCATAGAACTGTGACAGAGC 1348
Query 1414 CTAGGATTATTGTCCAAACGACGAGTGAAGTTGACCTCTTAGATGATGGATATAGGTGGC 1473
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1349 CTAGAATTATTGTCCAAACGAAGAGTGAAGTTGACCTCTTAGATGATGGATATAGGTGGC 1408
Query 1474 GCAAGTATGGTCAGAAAGTAGTCAAAGGAAATCCTTATCCGAGGAGCTACTATAAGTGTA 1533
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1409 GCAAGTATGGTCAGAAAGTAGTCAAAGGAAATCCTTATCCAAGGAGCTACTATAAGTGTA 1468
Query 1534 CAACACCAGATTGCGGAGTAAGGAAACATGTAGAGAGAGCAGCAACTGACCCAAAAGCTG 1593
| ||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1469 CGACACCGGATTGCGGAGTAAGGAAACATGTAGAGAGAGCAGCAAATGACCCGAAAGCTG 1528
Query 1594 TTGTAACAACATATGAAGGTAAACATAACCATGATGTTCCAGCTGCTAGAACCAGCAGCC 1653
| ||||||||||||||||| ||||||||||| || |||||||||| ||||||||||||||
Sbjct 1529 TCGTAACAACATATGAAGGGAAACATAACCACGACGTTCCAGCTGGTAGAACCAGCAGCC 1588
Query 1654 ATCAGTTAAGACCAAACAATCAACACAACACCTCAACGGTTAACTTCAATCATCAACAGC 1713
|||| |||| |||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1589 ATCAATTAAAACCAAACAATCAACCCAACACCTCAACGGTTAACTTCAATCAACAACAGC 1648
Query 1714 CTGTTGCACGTTTAAGGCTTAAAGAAGAGCAAATCACTTGACAGAGAAGAAGAATACGAC 1773
| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1649 CCGTTGCGCATTTAAGGCTTAAAGAAGAGCAAATCATTTGACAGAGAAGAAGAATACGAA 1708
Query 1774 GGCGCTTGAGCTTTTGTGAGTTTAATGAATCTTCTTTTTGGTTAATGA 1821
||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1709 GGCGCTTGAGCTTTTGTGAGTTTGTTGAATCTTCTTTTTGGTTAATGA 1756
Score = 255 bits (138), Expect = 7e-67
Identities = 148/153 (97%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 1855 TCTCTGGACAGAATCTCTGATATTACAGTTTCAAAAGGTATGTTCTTTTATTTCATGTTG 1914
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1757 TCTCTGGACAGAAACTCTGATATTACAGTTTCAAAAGGTATGTTCTTTTATTTCATGTTG 1816
Query 1915 GAATCTTCTGTGTAATCTTAAGAAGCTTTAGGAGGTAATGTAAAAAACCAGATTCAAAGT 1974
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1817 GAATCTTTTGTGTAATCTTAAGAAGCTTTAGGAGGTAATGTAAAAAACCAGATTCAAAGT 1876
Query 1975 TATGCCCTTATGTGAATTCTTTTGTACATGGGA 2007
| || |||||||||||||||||||||||||||
Sbjct 1877 TCTGGTCTTATGTGAATTCTTTTGTACATGGGA 1909
Score = 163 bits (88), Expect = 4e-39
Identities = 101/107 (94%), Gaps = 1/107 (1%)
Strand=Plus/Plus
Query 21 aaaaaTCTCTCCCATTAAAAGACTGCACAAAGAAATATTTT-ATACAAAATGAAAGAGAG 79
||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||
Sbjct 1 AAAAATCTCTCCCATTAAAAGACTGCAGAAAGAAATATTTTTATACAAAGTGAAAGAGAG 60
Query 80 AAACACGACACGAATTTTGTATAATTAAGATTACACaaaaaaaaGTG 126
||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct 61 AAACACGACACGAATTTTGTATAATTAAGATTATACCAAAAAATGTG 107
> Ahg916062 jgi|Araly1|916062|Al_scaffold_0008_813
Length=828
Score = 200 bits (108), Expect = 3e-50
Identities = 156/180 (87%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 932 ACAGCCTCAAAATGCTGACAAACCAGCTGATGATGGATACAACTGGCGGAAATATGGGCA 991
||| |||| ||||| ||||||||||||||||||||| || ||||||| |||||||||||
Sbjct 645 ACACCCTCTAAATGTTGACAAACCAGCTGATGATGGTTATAACTGGCAAAAATATGGGCA 704
Query 992 GAAGCAAGTGAAGGGGAGCGATTTTCCTCGGAGTTATTACAAATGTACGCATCCAGCTTG 1051
|||||||| || || ||||| |||||||| || |||||||| ||||| |||||| ||
Sbjct 705 AAAGCAAGTTAAAGGCAGCGAGTTTCCTCGAAGCTATTACAAGTGTACTAATCCAGGATG 764
Query 1052 TCCTGTCAAGAAGAAAGTGGAGAGGTCACTCGATGGACAAGTAACGGAAATCATCTACAA 1111
||||||||||||||| || ||||| || || |||||||||||||||||||||||||||||
Sbjct 765 TCCTGTCAAGAAGAAGGTTGAGAGATCTCTTGATGGACAAGTAACGGAAATCATCTACAA 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80065694990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5