BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03350.1
Length=809
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484243 jgi|Araly1|484243|fgenesh2_kg.5__235__AT2G03350.1 1053 0.0
> Ahg484243 jgi|Araly1|484243|fgenesh2_kg.5__235__AT2G03350.1
Length=794
Score = 1053 bits (570), Expect = 0.0
Identities = 736/811 (91%), Gaps = 31/811 (4%)
Strand=Plus/Plus
Query 1 AGAAAGAAAAATTGAGAGTCGCCACAGCTATCACTCTGCTCTGTCACTTTGTCTTTTACT 60
|||||||| ||||| |||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 1 AGAAAGAAGAATTGTGAGTCGCCGCAGCTATCACTCTGTTCTGTCACTTTGTC-TTTACT 59
Query 61 CagagaatcagagacagagagagaaagagagagagagagagCGAGGGGAAGGGA-AATGG 119
| || | |||| || | |||||||||||||| |||| ||| |||||
Sbjct 60 C------TC----TC----AGAG-AATCGCCAGAGAGAGAGCGAGAGGAA-GGAGAATGG 103
Query 120 AGAAGGCATTAACGAAAGTGACGAGCTTTAAAGTGGGAAGTTCATGGATCTCTAAGAAAG 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 104 AGAAGGCATTAACGAAAGTGACGAGCTTTAAAGTGGGAAGTTCATGGATCTCAAAGAAAG 163
Query 180 CTAAAGAAGAGCTCTCAAACATCACCAATGACCTCACTACATTCTCCAGTACGGTTGAAG 239
||||||||||| |||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 164 CTAAAGAAGAGTTCTCCAACATCACCAATGACCTCACTACTTTCTCCAGTACTGTTGAAG 223
Query 240 AGAAAGCAAAATGGATTTTCAACAAGCTTAAAGGAAAACCACTGAAAAGCTTACCAGACC 299
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 224 AGAAAGCAAAATGGGTTTTCAACAAGCTTAAAGGAAAACCACTCAAAAGCTTACCAGATC 283
Query 300 TCCTCAAAGAATACAACTTACCACCAGGACTCTTCCCACAAAACATAATCTGCTACGAAT 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 284 TCCTCAAAGAATACAACTTACCACCAGGACTCTTCCCACAAAACATAATCTGCTACGAGT 343
Query 360 TCGATGAGACGAAGAATAAACTCACCGTCTTCTTCTCTTCACCATGTGAAGTCACATTCA 419
| || ||||| ||||| |||||||| |||||||| |||||||| || |||||||||||||
Sbjct 344 TTGACGAGACAAAGAACAAACTCACTGTCTTCTTTTCTTCACCGTGCGAAGTCACATTCA 403
Query 420 AAGATGGATCAGCGATAAGATATGCAACGCGTGTGAAAGGGATTTTGCTTAGAGGGAAGC 479
|||| |||||||| |||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 404 AAGACGGATCAGCAATAAGATACGCGACGCGTGTGAAAGGGATTTTGCTTAGAGGGAAAC 463
Query 480 TGATGGGTGTGGAAGGAATGAAGACAAAAGTGTTGGTGTGGGTTAAAGTCACAACAATCT 539
| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 464 TTATGGGTGTGGAAGGAATGAAGACAAAAGTCTTGGTTTGGGTTAAAGTCACAACAATTT 523
Query 540 CAGTCGAGAGCTCCAAGTCTGACAAGCTCTGGTTCACTGCTGGTGTCAAGAAATCTCGAT 599
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 CAGTCGAGAGCTCGAAGTCTGACAAGCTCTGGTTCACTGCTGGTGTCAAGAAATCTCGAT 583
Query 600 CTAAGGATGTTTATGACACACCTCATGATGCTATCAAAGTCATTGGAGAGTTCTAAGGAt 659
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 584 CTAAGGACGTTTATGACACACCTCATGATGCTATCAAAGTCGTTGGAGAGTTCTAAGGAT 643
Query 660 tttttt-CA--CA-AT-TGGTTATTATCATATTTGATTCATGAATTTATTTGGG-----G 709
|||||| | || | ||||||||||||||||||||||||||||||||||||| |
Sbjct 644 TTTTTTTCTTTCAGAAATGGTTATTATCATATTTGATTCATGAATTTATTTGGGTATTTG 703
Query 710 ---TTATTTGCATTTTGGGAAGAGGTATACTTAAAGGAAATGTGTTTATATAACTCTCAT 766
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 704 GGGTTATTTGCATTTTGGGAAGAGGTATATTTAAAGGGAATGTGTTTATATAACTCTCAT 763
Query 767 TTTCCTCCTTTATATGCAAGAAATCACAAAT 797
||||||||| |||||||||||||||||||||
Sbjct 764 TTTCCTCCTATATATGCAAGAAATCACAAAT 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29888366928
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5