BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03360.2
Length=1486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322639 jgi|Araly1|322639|fgenesh1_pm.C_scaffold_5000183 839 0.0
> Ahg322639 jgi|Araly1|322639|fgenesh1_pm.C_scaffold_5000183
Length=1287
Score = 839 bits (454), Expect = 0.0
Identities = 674/775 (87%), Gaps = 35/775 (5%)
Strand=Plus/Plus
Query 119 ATGGTTAGGAAAACGACGTCGAAGAGTTATTCGGTGGCGTTGGTGATCGTTATGGTTATA 178
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTTAGGAAAACGACGTCGAAGAGATATTCGGTGGCGTTGGTGATCGTTATGGTTATA 60
Query 179 TATGTTGCTTTCTCCTCCGTCTTCGATCGTCAATTGTTTCGT-TCGTTAAGTTTCTCTCA 237
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 61 TATGTTGCTTTCTCCTCCGTCTTCGATCGTCAATTGTTTC-TATCGTTAAGTTTCTCTCA 119
Query 238 AGTTTCCTCTGTAGGTACGTTACAACAAAGATGGGAATCAAGAAGAA-CAAAGCAA---A 293
|| ||| |||||||||||| ||||||||| ||||||| ||| |||| |
Sbjct 120 AG--------GTA----CGTTACAACAAACATGGGAATCCAGAAGAATCAA-GCAACCCA 166
Query 294 -AC--CCAAAAGTGATGGCTGCATCAGCAAAAATCACATGTGACCGATCCCACACT-AGT 349
|| ||| ||| || || | || |||| ||||||||||||||||||||||| | | |
Sbjct 167 CACAACCACAAGAGA---CTACTTCGGCAACAATCACATGTGACCGATCCCACAGTGA-T 222
Query 350 TACGATCTTTGCTCCATCAACGGCTCATGTATTCTCAACCCTAAAACCGGAACTCTAACT 409
|||||||| ||||| ||||||||||||||||||||| |||| |||||||| ||| | |||
Sbjct 223 TACGATCTCTGCTCAATCAACGGCTCATGTATTCTCGACCCCAAAACCGGTACTTTTACT 282
Query 410 CTTATGGACCGAACACTTACCACATCAGCACCACTTGTCGAGAAAATCAGGCCATACCCA 469
|| ||||||| |||| || | || ||| | |||| |||||||||||||||||||||
Sbjct 283 CTCATGGACCCAACATTTGCAACTTCA-C-----TTGTTGAGAAAATCAGGCCATACCCA 336
Query 470 AGAAAATCAGAAAACTGGATCATGCCTAGGATCAGAGAGCTAAAACTAA-CTTCAGGCCC 528
|||||| | |||||||||| |||||||||||||| |||||||| | ||| || |||||||
Sbjct 337 AGAAAAGCTGAAAACTGGACCATGCCTAGGATCAAAGAGCTAACATTAAGCT-CAGGCCC 395
Query 529 ATCGGACCTGACACGATCATGTGATATAACACATGATTCGCCGGCCATTGTGTTCAGTGC 588
|| || | |||| ||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 396 ATTGGGCTTGACCCGATCATGTGACATAACACATGATTCGCCAGCGATTGTGTTCAGTGC 455
Query 589 TGGAGGTTACACCGGAAGTATTTATCACGATTTTATCGATGGTTTCATCCCACTTTTTAT 648
||||||||||||||||| |||||||| ||||| || || |||||||| || ||||| ||
Sbjct 456 CGGAGGTTACACCGGAAGCATTTATCATGATTTCATGGACGGTTTCATTCCTCTTTTCAT 515
Query 649 CACGGCCAACTCGGTATACCCGGACCGCGATTTCATCCTCGTGGTTGTGAATCCTAAGGA 708
||| |||||||| ||||||||||| |||||||||||||||||||| |||||| |||||||
Sbjct 516 CACCGCCAACTCCGTATACCCGGATCGCGATTTCATCCTCGTGGTAGTGAATTCTAAGGA 575
Query 709 ATGGTGGATGCCAAAATACATCGATATTCTAGGTACGTTTAGCAAACACAAAACCATATT 768
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 576 GTGGTGGATGCCGAAATACATCGATATTCTAGGTGCGTTTAGCAAACACAAAACCATACT 635
Query 769 ACTAGACAAAGAAAATGCTTCTATTACACATTGCTTCACTTCAGCCACTGTGGGCCTAAT 828
||| |||||||||||||||||| |||||||||||||| |||||| ||||||||| ||| |
Sbjct 636 ACTTGACAAAGAAAATGCTTCTTTTACACATTGCTTCCCTTCAGTCACTGTGGGTCTAGT 695
Query 829 TTCACATGGGCCTATGACAATAGACCCAACCCAAATACCCAACTCCAAATCATTA 883
|||||||||||||| | |||||| ||||||||||||||||| ||||||||||||
Sbjct 696 TTCACATGGGCCTAAAATAATAGATCCAACCCAAATACCCAATTCCAAATCATTA 750
Score = 726 bits (393), Expect = 0.0
Identities = 489/537 (91%), Gaps = 0/537 (0%)
Strand=Plus/Plus
Query 950 CCTCGTCTCATATTGGTCCGTAGATATGGTAACATTGGTCGAGTGATATTAAACGAGGAA 1009
||||||||||||||||| |||||||||| ||||||||||| |||||| |||||||| ||
Sbjct 751 CCTCGTCTCATATTGGTTAGTAGATATGGGAACATTGGTCGGGTGATACTAAACGAGAAA 810
Query 1010 GAGATCAGAGAGATGCTTGAAGATGTTGGATTCGAGGTAATCACATTTAGACCATCAAAA 1069
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 811 GAGATCAAAGAGATGCTTGAAGATGTTGGATTCGAGGTAATCACATTTAGATCATCGAAA 870
Query 1070 ACAACGAGTTTGAGAGAAGCGTATAAACTTATAAAGTCAAGCCACGGGATGATCGGGGTT 1129
|| |||||| | ||||||||||| |||||||||||||| ||||||| |||| | ||||||
Sbjct 871 ACGACGAGTGTAAGAGAAGCGTACAAACTTATAAAGTCGAGCCACGTGATGGTTGGGGTT 930
Query 1130 CATGGTGCAGCATTAACCCAGTTGTTGTTTCTTCGACCAGGTTCAGTGTTGGTTCAAATT 1189
|||||||| ||| ||||||| ||||||||||||||||| |||||| ||||||||||| ||
Sbjct 931 CATGGTGCGGCACTAACCCATTTGTTGTTTCTTCGACCCGGTTCAATGTTGGTTCAAGTT 990
Query 1190 GTTCCGGTTGGACTAGGTTGGGTGTCTAAAACGTGTTTCGAAACGCCGGCTAAAGCAATG 1249
|||||| |||| |||||||||| ||| |||||||||| |||| |||| ||||| ||||||
Sbjct 991 GTTCCGCTTGGGCTAGGTTGGGCGTCAAAAACGTGTTACGAATCGCCAGCTAAGGCAATG 1050
Query 1250 AAGTTGGATTATACGGAGTATCGAGTAAATGTGGAAGAAAGCAGTTTGATAGAGAAGTAT 1309
|||||||| |||| |||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 1051 AAGTTGGAGTATATTGAGTATCGGGTGAATGTGGAAGAGAGCAGTTTGATAGAGAAGTAT 1110
Query 1310 AGTAGAGATGATTTGGTTTTGAAAGATCCTATTGCTTATAGAGGAATGGATTGGAATGTG 1369
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1111 AACAGAGATGATTTGGTTTTGAAAGATCCGATTGCTTATAGAGGAATGGATTGGAATGTG 1170
Query 1370 ACTAAAATGAAAGTCTATTTAAAAGATCAAGATGTGAGGTTAGATGTGAATCGGTTTAGG 1429
|||||||||||||| ||||||||||| |||||||| || ||||| |||||||||||||||
Sbjct 1171 ACTAAAATGAAAGTTTATTTAAAAGAACAAGATGTTAGATTAGACGTGAATCGGTTTAGG 1230
Query 1430 AAACATATGAATGAAGCATACAAGAAAGCTAAGTCGTTTATGGACTTAAACGGTTGA 1486
||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||
Sbjct 1231 AAACATATGAATGAAGCATACGAGAAAGCTAAATTGTTTATGGACTTAAACGGTTGA 1287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55611757700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5