BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03390.1
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936128 jgi|Araly1|936128|scaffold_500319.1 1700 0.0
Ahg322643 jgi|Araly1|322643|fgenesh1_pm.C_scaffold_5000187 1114 0.0
> Ahg936128 jgi|Araly1|936128|scaffold_500319.1
Length=1037
Score = 1700 bits (920), Expect = 0.0
Identities = 990/1023 (97%), Gaps = 7/1023 (1%)
Strand=Plus/Plus
Query 122 TCGGTCTTGATAAAATAAAATGGTTCAAAGTCAGTCGTTAAGCACATTAACAATCTGTGG 181
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TCGGTCTTGATAAAAGAACATGGTTCAAAGTCAGTCGTTAAGCACATTAACAATCTGTGG 62
Query 182 AAGTGTAAAAGTTTCAAGCTTGTTGAGGAATCGTTTAAATTCAGT-GAAAGCTTCAAGCT 240
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 63 AAGTGTAAAAGTTTCAAGCTTGTTGAGGAATCGTTTAAATTCA-TCGAAAGCTTCAAGCT 121
Query 241 TGATCGGTGATCGATGTGTTTCGTGTCAGTTTTTGCGTAAATCACCGTCCTTTAGAAGCC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 122 TGATCGGTGATCGATGTGTTTCGTGTCAGTTTTTGCGTAAATCACCGTCCTTTAGAAGTC 181
Query 301 ATTGGAAGTCATTAAAGCAAAGAAATTTGTTGAGGGTTGAAGCTAGATGGCCATTTCAA- 359
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 ATTGGAAGTCAATAAAGCAAAGAAATTTGTTGAGGGTTGAAGCTAGATGGCCATTTCAAG 241
Query 360 --GGAGGTGGTGAACAAGGTTTAGACCCGAGCTCTGAGAGAAGCGAGAGTGCTAATGAAG 417
|| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 242 GTGGTGGTGGTGAACAAGGTTTAGACCCGAGCTCTGAGCGAAGCGAGAGTGCCAATGAAG 301
Query 418 ATATATTGATCTTTTTCTTTCAGCTGGATTTGGCTACTCGTGTACAGTATGCAATGAATC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 ATATATTGATCTTTTTCTTTCAGCTGGATTTGGCTACTCGTGTACAGTATGCAATGAATC 361
Query 478 TGGAGCAGTACGACATTGCGCAACAACTAAGAGAAAAGCTAACTGAGGTGGAAGAGGAGT 537
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TGGAGCAGTACGATATTGCGCAACAACTAAGAGAAAAGCTAACTGAGGTGGAAGAGGAGT 421
Query 538 CGATAAGGCTGCAGGAAGGGAAAAGAGGGTCATCAGCTAAAAGTGAAGCTCAAGACAAGG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CGATAAGGCTGCAGGAAGGGAAAAGAGGGTCATCAGCTAAAAGTGAAGCTCAAGACAAGG 481
Query 598 GTATTAGCATTATAAGGCTACGTGCAGATCTCCAGAATGCCATTGACAGTGAGGATTACG 657
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 482 GTATTAGTATTATAAGGCTACGTGCCGATCTCCAGAATGCCATTGACAGTGAGGATTACG 541
Query 658 GTTTGGCAGCTAAGTTACGAGATGAAATCTCAAAGCTTGAGGCAGAATCATTAGCTGTAT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GTTTGGCAGCTAAGTTACGAGATGAAATCTCAAAGCTTGAGGCAGAATCATTAGCTGTAT 601
Query 718 CTGCGAAAGCCTTGGCTTTTGAGAAA-GCAGAGTATGCATTTCGTTTGGGACAGAAACTT 776
|||||||||||||||||||||| ||| ||||||||||||||||| || |||||||| |||
Sbjct 602 CTGCGAAAGCCTTGGCTTTTGA-AAATGCAGAGTATGCATTTCGCTTAGGACAGAAGCTT 660
Query 777 AGACACAAAACTTTTGGTTACCGGGCTGTAGTGTGTGGTATGGATCCAATTTGCAGTGAA 836
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 661 AGACACAAAACTTTTGGTTACCGGGCTGTAGTTTGTGGTATGGATCCAATTTGCTGTGAA 720
Query 837 TCAAGCTCTTGGATGGAAGCTGCAGAGGTTGAAAAGTTACCTCGTGGATCCAATCAGCCA 896
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 TCAAGCTCTTGGATGGAAGCTGCAGAGGTTGAAAAGTTACCTCGCGGATCCAATCAGCCA 780
Query 897 TTTTATCAGGTTCTAGTCGATGTTCGGACGCACCCAGATCTACTAGTGGCATATGTTGCT 956
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 781 TTTTATCAGGTTCTAGTCGATGCTCGGACGCACCCAGATCTAGTAGTGGCATATGTTGCT 840
Query 957 GAAGACAATCTGTTAGCTCCTGAAAAACCCGATAAGGAAAGGTTTGATCATCCATACATT 1016
||||||||||| |||||||| || |||||||| || ||||||||||||||||||||||||
Sbjct 841 GAAGACAATCTATTAGCTCCCGAGAAACCCGACAAAGAAAGGTTTGATCATCCATACATT 900
Query 1017 TCTTTTCTCTACTATGGAGCTGACACAGCTGGAGATTTCATCCCTGTCAAACAATTGCGT 1076
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCTTTTCTCTACTATGGAGCCGACACAGCTGGAGATTTCATCCCTGTCAAACAATTGCGT 960
Query 1077 GAGAAGTACAACAGACCTCGGCATGAAGTTCCTTTTGATTCACAAGACGAAGATTAAGAT 1136
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 961 GAGAAGTACAACAGACCTCGGCATGAAGTTCCTTTTGATTCACAAGAAGAAGATTAAAAT 1020
Query 1137 GAA 1139
|||
Sbjct 1021 GAA 1023
> Ahg322643 jgi|Araly1|322643|fgenesh1_pm.C_scaffold_5000187
Length=663
Score = 1114 bits (603), Expect = 0.0
Identities = 644/664 (97%), Gaps = 2/664 (0%)
Strand=Plus/Plus
Query 471 ATGAATCTGGAGCAGTACGACATTGCGCAACAACTAAGAGAAAAGCTAACTGAGGTGGAA 530
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAATCTGGAGCAGTACGACATTGCGCAGCAACTAAGAGAAAAGCTAACTGAGGTGGAA 60
Query 531 GAGGAGTCGATAAGGCTGCAGGAAGGGAAAAGAGGGTCATCAGCTAAAAGTGAAGCTCAA 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGGAGTCGATAAGGCTGCAGGAAGGGAAAAGAGGGTCATCAGCTAAAAGTGAAGCTCAA 120
Query 591 GACAAGGGTATTAGCATTATAAGGCTACGTGCAGATCTCCAGAATGCCATTGACAGTGAG 650
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GACAAGGGTATTAGTATTATAAGGCTACGTGCCGATCTCCAGAATGCCATTGACAGTGAG 180
Query 651 GATTACGGTTTGGCAGCTAAGTTACGAGATGAAATCTCAAAGCTTGAGGCAGAATCATTA 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATTACGGTTTGGCAGCTAAGTTACGAGATGAAATCTCAAAGCTTGAGGCAGAATCATTA 240
Query 711 GCTGTATCTGCGAAAGCCTTGGCTTTTGAGAAA-GCAGAGTATGCATTTCGTTTGGGACA 769
||||||||||||||||||||||||||||| ||| ||||||||||||||||| || |||||
Sbjct 241 GCTGTATCTGCGAAAGCCTTGGCTTTTGA-AAATGCAGAGTATGCATTTCGCTTAGGACA 299
Query 770 GAAACTTAGACACAAAACTTTTGGTTACCGGGCTGTAGTGTGTGGTATGGATCCAATTTG 829
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 GAAGCTTAGACACAAAACTTTTGGTTACCGGGCTGTAGTTTGTGGTATGGATCCAATTTG 359
Query 830 CAGTGAATCAAGCTCTTGGATGGAAGCTGCAGAGGTTGAAAAGTTACCTCGTGGATCCAA 889
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 CTGTGAATCAAGCTCTTGGATGGAAGCTGCAGAGGTTGAAAAGTTACCTCGCGGATCCAA 419
Query 890 TCAGCCATTTTATCAGGTTCTAGTCGATGTTCGGACGCACCCAGATCTACTAGTGGCATA 949
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 420 TCAGCCATTTTATCAGGTTCTAGTCGATGCTCGGACGCACCCAGATCTAGTAGTGGCATA 479
Query 950 TGTTGCTGAAGACAATCTGTTAGCTCCTGAAAAACCCGATAAGGAAAGGTTTGATCATCC 1009
|||||||||||||||||| |||||||| || |||||||| || |||||||||||||||||
Sbjct 480 TGTTGCTGAAGACAATCTATTAGCTCCCGAGAAACCCGACAAAGAAAGGTTTGATCATCC 539
Query 1010 ATACATTTCTTTTCTCTACTATGGAGCTGACACAGCTGGAGATTTCATCCCTGTCAAACA 1069
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 ATACATTTCTTTTCTCTACTATGGAGCCGACACAGCTGGAGATTTCATCCCTGTCAAACA 599
Query 1070 ATTGCGTGAGAAGTACAACAGACCTCGGCATGAAGTTCCTTTTGATTCACAAGACGAAGA 1129
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 ATTGCGTGAGAAGTACAACAGACCTCGGCATGAAGTTCCTTTTGATTCACAAGAAGAAGA 659
Query 1130 TTAA 1133
||||
Sbjct 660 TTAA 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51122831697
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5