BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03410.1
Length=2412
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936134 jgi|Araly1|936134|scaffold_500325.1 1663 0.0
Ahg936135 jgi|Araly1|936135|scaffold_500326.1 268 1e-70
> Ahg936134 jgi|Araly1|936134|scaffold_500325.1
Length=1084
Score = 1663 bits (900), Expect = 0.0
Identities = 1017/1074 (95%), Gaps = 5/1074 (0%)
Strand=Plus/Plus
Query 290 ACCATGGAGGAAGCACGAGAATGAAAGGTCTCTTCAAGAACAAATCACGTCTTCCTGGTG 349
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACCATGGCGGAAGCACGAGAATGAAAGGTCTCTTCAAGAACAAATCACGTCTTCCTGGTG 60
Query 350 AAATCGTACGTCAGACTCGAGATCTCATCGCTTTAGCGGAATCCGAAGAAGAAGAAACCG 409
||||||| |||||||||||||||||||| |||||||| |||||| |||||||||| ||
Sbjct 61 AAATCGTTCGTCAGACTCGAGATCTCATTGCTTTAGCCGAATCC---GAAGAAGAAATCG 117
Query 410 ATGCGAGAAACTCGAAAAGGTTAGGGATTTGTGCGGAGTTGTGTCGAAACATTAGAGATT 469
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 118 ATTCGAGAAACTCGAAAAGGTTAGGGATTTGTGCGGAATTGTGTCGAAACATTAGTGATT 177
Query 470 TGAAATCGATTCTTTATGGTAATGGTGAAGCTGAGCCTGTTCCTGAAGCTTGTCTTTTGT 529
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 178 TGAAATCGATTCTTTATGGTAATAGTGAAGCTGAGCCTGTTCCTGAAGCTTGTCTTATGT 237
Query 530 TAACTCAAGAGTTTTTCCGAGCAGACACGCTTCGTCCTTTGATCAAATCTATACCAAAAC 589
||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct 238 TAACTCAAGAGTTTTTCCGAGAAGATACGCTTCGTCCTTTGATCAAATCTATTCCAAAAC 297
Query 590 TTGACCTAGAAGCAAGAAAAGACGCGACACAGATTGTCGCGAATCTT-CAGAAGCAACAA 648
|||| ||||||||||||||||||||||| |||||||| |||||| || ||||| ||||||
Sbjct 298 TTGATCTAGAAGCAAGAAAAGACGCGACGCAGATTGTTGCGAAT-TTGCAGAAACAACAA 356
Query 649 GTCGAATTTCGACTCGTTGCTTCTGAATATCTTGAATCGAACTTAGATGTTATCGATTCG 708
||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 357 GTCGAATCTCGACTCGTTGCTTCTGAATATCTTGAATCGAATTTAGATGTTATTGATTCG 416
Query 709 TTAGTCGAAGGTATCGATCACGACCATGAGCTGGCGTTGCATTACACGGGAATGCTTAAA 768
|||||||||||||||||||| || || ||| ||||||||||||| || ||||||||||||
Sbjct 417 TTAGTCGAAGGTATCGATCATGATCACGAGTTGGCGTTGCATTATACAGGAATGCTTAAA 476
Query 769 GAATGTGTGCGGCATCAGGTTGTTGCAAAGTACATACTCGAATCGAAGAATTTGGAGAAG 828
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 477 GAATGTGTGCGGCATCAGGTTGTTGCCAAGTACATACTCGAATCCAAGAATTTGGAGAAG 536
Query 829 TTTTTCGATTATGTTCAGCTTCCGTATTTCGATGTAGCTACCGATGCTAGCAAGATCTTC 888
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 537 TTTTTCGATTATGTTCAGCTTCCGTATTTTGATGTAGCTACCGATGCTAGCAAGATCTTT 596
Query 889 AGAGAGCTTTTGACGAGGCATAAATCGACTGTAGCGGAGTATCTTGCGAAGAACTACGAA 948
|| |||||||||||||||||||||||||||||||| ||||||||| | |||||||||||
Sbjct 597 AGGGAGCTTTTGACGAGGCATAAATCGACTGTAGCTGAGTATCTTACCAAGAACTACGAG 656
Query 949 TGGTTTTTCGCAGAGTATAACACCAAGTTGTTGGAGAAAGGAAGCTATTTTACGAAGAGA 1008
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 657 TGGTTTTTCGCAGAGTATAACACGAAGTTGTTGGAGAAAGGAAGCTACTTTACGAAGAGA 716
Query 1009 CAAGCGTCGAAATTGCTTGGAGATGTGTTGATGGATCGTTCGAATTCAGGTGTGATGGTA 1068
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CAAGCTTCGAAATTGCTTGGAGATGTGTTGATGGATCGTTCGAATTCAGGTGTGATGGTT 776
Query 1069 AAGTATGTGAGCAGTTTGGATAATTTGAGAATCATGATGAATCTTTTAAGAGAACCAACC 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AAGTATGTGAGCAGTTTGGATAATTTGAGAATCATGATGAATCTTTTAAGAGAACCAACC 836
Query 1129 AAGAACATTCAGTTAGAAGCATTTCATATCTTTAAACTCTTTGTGGCAAACGAGAACAAA 1188
|||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||
Sbjct 837 AAGAACATTCAGTTAGAAGCTTTTCATATCTTCAAGCTCTTTGTGGCGAACGAGAACAAA 896
Query 1189 CCTGAGGATATCGTGGCGATTCTCGTGGCGAATCGGACCAAGATTCTTCGTTTGTTTGCT 1248
|| ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 897 CCAGAGGACATTGTGGCGATTCTCGTGGCGAATCGGAACAAGATTCTTCGTTTGTTTGCT 956
Query 1249 GATTTGAAACCTGAGAAAGAAGATGTAGGTTTTGAAACTGATAAAGCATTGGTTATGAAT 1308
||||||||| |||| |||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 957 GATTTGAAAGCTGAAAAAGAAGATGTAGGTTTTGAAACTGACAAATCATTGGTTATGAAT 1016
Query 1309 GAGATTGCTACACTTTCTCTTCTCGATATCAAAACCGCAGATCGATAAGaaaaa 1362
|||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1017 GAGATTGCTACACTTTCTCTTCTCGATATCAAAACCGCAGATCGATAATAAAAA 1070
> Ahg936135 jgi|Araly1|936135|scaffold_500326.1
Length=568
Score = 268 bits (145), Expect = 1e-70
Identities = 197/219 (90%), Gaps = 15/219 (7%)
Strand=Plus/Minus
Query 2154 CGGTACAAGGAGAGAGGAGAAGGGTGAGTGAGGCAGCGAGAGGGAAGGTGGACTTGCAGA 2213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 CGGTACAAGGAGAGAGGAGAAGGGTGAGTGAGGCAGCGAGAGGGAAGGTGGACTTGCAGA 163
Query 2214 GAAGATGGTGAAACGGGGAT-G-G-TG-C--TGATGATG---AT-AG-----AGCCATGG 2258
|||||||||||||||| ||| | | || | |||||||| || || ||||||||
Sbjct 162 GAAGATGGTGAAACGGTGATGGTGATGACGATGATGATGATAATGAGCATATAGCCATGG 103
Query 2259 AGATACGAGGATGATGAATTACTCTTGGTTCATAGAGACTAAAGCTTGGTCGAGAGAAAG 2318
|||||||||||||||||| |||||||||||||| |||| | |||||||||||||||||||
Sbjct 102 AGATACGAGGATGATGAACTACTCTTGGTTCATGGAGAGTGAAGCTTGGTCGAGAGAAAG 43
Query 2319 AAGAGATTTTTGTTTGCATCATTTTGCCTTTAGATTTTT 2357
|||||||||| ||||||||||||||||||| ||||||||
Sbjct 42 AAGAGATTTTGGTTTGCATCATTTTGCCTTCAGATTTTT 4
Score = 233 bits (126), Expect = 4e-60
Identities = 136/141 (96%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 1501 TTTTATTCAACACCAGTCTTCTTTTTCAACATTGTGATGAATTTCTCCTTTTCTTCATCT 1560
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 550 TTTTATTCAACACCAGTCTTCTTTTTCAACATTGTGATAAATTTCTCCTTCTCTTCATCT 491
Query 1561 GTCATTCCTGTGGTTGAGCAATCTCCTACTCCCCATTCTGCTCCTCTCAGACAATATTTG 1620
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 490 GTCATTCCTGTGGTTGAACAATCTCCTACTCCCCATTCTGCTCCTCTTAGACAATATTTG 431
Query 1621 TCTTGAATCTCTCTTTCATTC 1641
|||||||| ||||||||||||
Sbjct 430 TCTTGAATATCTCTTTCATTC 410
Score = 156 bits (84), Expect = 8e-37
Identities = 94/99 (95%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 1791 CTTTTCTTTGTTGAGTTTGGAATTCTCAAGTAATTTCTTGAGAAGTGGAGAATCTTTGAA 1850
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 410 CTTTTCTTTGTTGAGTTTGGAATTCTCAAGTAGTTTCTTGAGAAGTGGAGATTCTTTGAA 351
Query 1851 TCTGGCATCGTTCTCTGCGTAGAACTTCTGGTTTTTTGC 1889
|||||||||||| || ||||||||||||||||| |||||
Sbjct 350 TCTGGCATCGTTTTCAGCGTAGAACTTCTGGTTCTTTGC 312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90883324570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5