BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G03410.1 Length=2412 Score E Sequences producing significant alignments: (Bits) Value Ahg936134 jgi|Araly1|936134|scaffold_500325.1 1663 0.0 Ahg936135 jgi|Araly1|936135|scaffold_500326.1 268 1e-70 > Ahg936134 jgi|Araly1|936134|scaffold_500325.1 Length=1084 Score = 1663 bits (900), Expect = 0.0 Identities = 1017/1074 (95%), Gaps = 5/1074 (0%) Strand=Plus/Plus Query 290 ACCATGGAGGAAGCACGAGAATGAAAGGTCTCTTCAAGAACAAATCACGTCTTCCTGGTG 349 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACCATGGCGGAAGCACGAGAATGAAAGGTCTCTTCAAGAACAAATCACGTCTTCCTGGTG 60 Query 350 AAATCGTACGTCAGACTCGAGATCTCATCGCTTTAGCGGAATCCGAAGAAGAAGAAACCG 409 ||||||| |||||||||||||||||||| |||||||| |||||| |||||||||| || Sbjct 61 AAATCGTTCGTCAGACTCGAGATCTCATTGCTTTAGCCGAATCC---GAAGAAGAAATCG 117 Query 410 ATGCGAGAAACTCGAAAAGGTTAGGGATTTGTGCGGAGTTGTGTCGAAACATTAGAGATT 469 || |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 118 ATTCGAGAAACTCGAAAAGGTTAGGGATTTGTGCGGAATTGTGTCGAAACATTAGTGATT 177 Query 470 TGAAATCGATTCTTTATGGTAATGGTGAAGCTGAGCCTGTTCCTGAAGCTTGTCTTTTGT 529 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 178 TGAAATCGATTCTTTATGGTAATAGTGAAGCTGAGCCTGTTCCTGAAGCTTGTCTTATGT 237 Query 530 TAACTCAAGAGTTTTTCCGAGCAGACACGCTTCGTCCTTTGATCAAATCTATACCAAAAC 589 ||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||| Sbjct 238 TAACTCAAGAGTTTTTCCGAGAAGATACGCTTCGTCCTTTGATCAAATCTATTCCAAAAC 297 Query 590 TTGACCTAGAAGCAAGAAAAGACGCGACACAGATTGTCGCGAATCTT-CAGAAGCAACAA 648 |||| ||||||||||||||||||||||| |||||||| |||||| || ||||| |||||| Sbjct 298 TTGATCTAGAAGCAAGAAAAGACGCGACGCAGATTGTTGCGAAT-TTGCAGAAACAACAA 356 Query 649 GTCGAATTTCGACTCGTTGCTTCTGAATATCTTGAATCGAACTTAGATGTTATCGATTCG 708 ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 357 GTCGAATCTCGACTCGTTGCTTCTGAATATCTTGAATCGAATTTAGATGTTATTGATTCG 416 Query 709 TTAGTCGAAGGTATCGATCACGACCATGAGCTGGCGTTGCATTACACGGGAATGCTTAAA 768 |||||||||||||||||||| || || ||| ||||||||||||| || |||||||||||| Sbjct 417 TTAGTCGAAGGTATCGATCATGATCACGAGTTGGCGTTGCATTATACAGGAATGCTTAAA 476 Query 769 GAATGTGTGCGGCATCAGGTTGTTGCAAAGTACATACTCGAATCGAAGAATTTGGAGAAG 828 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 477 GAATGTGTGCGGCATCAGGTTGTTGCCAAGTACATACTCGAATCCAAGAATTTGGAGAAG 536 Query 829 TTTTTCGATTATGTTCAGCTTCCGTATTTCGATGTAGCTACCGATGCTAGCAAGATCTTC 888 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 537 TTTTTCGATTATGTTCAGCTTCCGTATTTTGATGTAGCTACCGATGCTAGCAAGATCTTT 596 Query 889 AGAGAGCTTTTGACGAGGCATAAATCGACTGTAGCGGAGTATCTTGCGAAGAACTACGAA 948 || |||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| Sbjct 597 AGGGAGCTTTTGACGAGGCATAAATCGACTGTAGCTGAGTATCTTACCAAGAACTACGAG 656 Query 949 TGGTTTTTCGCAGAGTATAACACCAAGTTGTTGGAGAAAGGAAGCTATTTTACGAAGAGA 1008 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 657 TGGTTTTTCGCAGAGTATAACACGAAGTTGTTGGAGAAAGGAAGCTACTTTACGAAGAGA 716 Query 1009 CAAGCGTCGAAATTGCTTGGAGATGTGTTGATGGATCGTTCGAATTCAGGTGTGATGGTA 1068 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 CAAGCTTCGAAATTGCTTGGAGATGTGTTGATGGATCGTTCGAATTCAGGTGTGATGGTT 776 Query 1069 AAGTATGTGAGCAGTTTGGATAATTTGAGAATCATGATGAATCTTTTAAGAGAACCAACC 1128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 AAGTATGTGAGCAGTTTGGATAATTTGAGAATCATGATGAATCTTTTAAGAGAACCAACC 836 Query 1129 AAGAACATTCAGTTAGAAGCATTTCATATCTTTAAACTCTTTGTGGCAAACGAGAACAAA 1188 |||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||| Sbjct 837 AAGAACATTCAGTTAGAAGCTTTTCATATCTTCAAGCTCTTTGTGGCGAACGAGAACAAA 896 Query 1189 CCTGAGGATATCGTGGCGATTCTCGTGGCGAATCGGACCAAGATTCTTCGTTTGTTTGCT 1248 || ||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 897 CCAGAGGACATTGTGGCGATTCTCGTGGCGAATCGGAACAAGATTCTTCGTTTGTTTGCT 956 Query 1249 GATTTGAAACCTGAGAAAGAAGATGTAGGTTTTGAAACTGATAAAGCATTGGTTATGAAT 1308 ||||||||| |||| |||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 957 GATTTGAAAGCTGAAAAAGAAGATGTAGGTTTTGAAACTGACAAATCATTGGTTATGAAT 1016 Query 1309 GAGATTGCTACACTTTCTCTTCTCGATATCAAAACCGCAGATCGATAAGaaaaa 1362 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1017 GAGATTGCTACACTTTCTCTTCTCGATATCAAAACCGCAGATCGATAATAAAAA 1070 > Ahg936135 jgi|Araly1|936135|scaffold_500326.1 Length=568 Score = 268 bits (145), Expect = 1e-70 Identities = 197/219 (90%), Gaps = 15/219 (7%) Strand=Plus/Minus Query 2154 CGGTACAAGGAGAGAGGAGAAGGGTGAGTGAGGCAGCGAGAGGGAAGGTGGACTTGCAGA 2213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 222 CGGTACAAGGAGAGAGGAGAAGGGTGAGTGAGGCAGCGAGAGGGAAGGTGGACTTGCAGA 163 Query 2214 GAAGATGGTGAAACGGGGAT-G-G-TG-C--TGATGATG---AT-AG-----AGCCATGG 2258 |||||||||||||||| ||| | | || | |||||||| || || |||||||| Sbjct 162 GAAGATGGTGAAACGGTGATGGTGATGACGATGATGATGATAATGAGCATATAGCCATGG 103 Query 2259 AGATACGAGGATGATGAATTACTCTTGGTTCATAGAGACTAAAGCTTGGTCGAGAGAAAG 2318 |||||||||||||||||| |||||||||||||| |||| | ||||||||||||||||||| Sbjct 102 AGATACGAGGATGATGAACTACTCTTGGTTCATGGAGAGTGAAGCTTGGTCGAGAGAAAG 43 Query 2319 AAGAGATTTTTGTTTGCATCATTTTGCCTTTAGATTTTT 2357 |||||||||| ||||||||||||||||||| |||||||| Sbjct 42 AAGAGATTTTGGTTTGCATCATTTTGCCTTCAGATTTTT 4 Score = 233 bits (126), Expect = 4e-60 Identities = 136/141 (96%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 1501 TTTTATTCAACACCAGTCTTCTTTTTCAACATTGTGATGAATTTCTCCTTTTCTTCATCT 1560 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 550 TTTTATTCAACACCAGTCTTCTTTTTCAACATTGTGATAAATTTCTCCTTCTCTTCATCT 491 Query 1561 GTCATTCCTGTGGTTGAGCAATCTCCTACTCCCCATTCTGCTCCTCTCAGACAATATTTG 1620 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 490 GTCATTCCTGTGGTTGAACAATCTCCTACTCCCCATTCTGCTCCTCTTAGACAATATTTG 431 Query 1621 TCTTGAATCTCTCTTTCATTC 1641 |||||||| |||||||||||| Sbjct 430 TCTTGAATATCTCTTTCATTC 410 Score = 156 bits (84), Expect = 8e-37 Identities = 94/99 (95%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 1791 CTTTTCTTTGTTGAGTTTGGAATTCTCAAGTAATTTCTTGAGAAGTGGAGAATCTTTGAA 1850 |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 410 CTTTTCTTTGTTGAGTTTGGAATTCTCAAGTAGTTTCTTGAGAAGTGGAGATTCTTTGAA 351 Query 1851 TCTGGCATCGTTCTCTGCGTAGAACTTCTGGTTTTTTGC 1889 |||||||||||| || ||||||||||||||||| ||||| Sbjct 350 TCTGGCATCGTTTTCAGCGTAGAACTTCTGGTTCTTTGC 312 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90883324570 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5