BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03440.1
Length=914
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936137 jgi|Araly1|936137|scaffold_500328.1 582 1e-165
> Ahg936137 jgi|Araly1|936137|scaffold_500328.1
Length=597
Score = 582 bits (315), Expect = 1e-165
Identities = 434/488 (89%), Gaps = 21/488 (4%)
Strand=Plus/Plus
Query 253 CAACAACACATAAACCCGGTCACGGCGAGCCAACAACACATAAACCGGTCTCCAACACCG 312
|||||| | | ||||||||||| ||| ||||||||||||||||||| ||||||||||
Sbjct 103 CAACAA-AAACAAACCCGGTCAAACCGATTCAACAACACATAAACCGGTTTCCAACACCG 161
Query 313 ATCCAA-CAACACACAGACCGGCTACGAACGCTGAGCTCATGGCTAGTGCCAAGATCGTA 371
|| ||| ||||||| || || ||| ||||||| |||||||||||||||||||||||||||
Sbjct 162 AT-CAATCAACACATAGGCCAGCTTCGAACGCCGAGCTCATGGCTAGTGCCAAGATCGTA 220
Query 372 GCCGAAGCTGCTCAAGCCGCTGCTCGTCACGAGTCAGACAAGCTTGACAAAGCCAAAGTC 431
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 221 GCCGAAGCTGCTCAAGCCGCTGCTCGTAACGAGTCAGACAAGCTTGACAAAGCTAAAGTC 280
Query 432 GCCGGAGCCACCGCTGATATCTTAGACGCCGCTTCTAGATACGGTAAGCTCGATGAAAAG 491
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 GCCGGAGCCGCCGCTGACATCTTAGACGCCGCTTCTAGATACGGTAAGCTCGATGAAAAG 340
Query 492 AGCGGTGTTGGTCAGTACCTTGAAAAGGCTGAACAATATCTTCACAAGTACGAAACTTCC 551
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 341 AGCGGTGTTGGTCAGTACCTCGAAAAGGCTGAACAATATCTCCACAAGTACGAAACTTCC 400
Query 552 CACTCTCACTCCTCCACCGGTGGAA-CT--GGAAGCCA---CGGTAATGTT-G-GA-GGA 602
|| ||||| |||||||||||||||| | || ||||| ||||| || | | |||
Sbjct 401 CAGTCTCAGTCCTCCACCGGTGGAAGCCACGGTAGCCAAGGCGGTATTGGCAGCGGTGGA 460
Query 603 --C-ACGGTGGTGG-AGC--TGGAGCACCGGCGGCTAAGAAAGAAGAT--GA-GAAGTCC 653
| | ||||||| ||| |||||||||||||||||||||||||||| || |||||||
Sbjct 461 AGCCATGGTGGTGTCAGCGGTGGAGCACCGGCGGCTAAGAAAGAAGATCAGAAGAAGTCC 520
Query 654 GGAGGTGGTCATGGGTTTGGAGATTATGCTAAGATGGCTCAAGGTTTTATGAAGTGAGTA 713
|||||||| | ||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 521 GGAGGTGGGCGTGGCTTTGGAGATTATGCTAAGATGGCTCAAGGTTTTATGAAGTGATTA 580
Query 714 ATGTTTTA 721
||||||||
Sbjct 581 ATGTTTTA 588
Score = 219 bits (118), Expect = 4e-56
Identities = 139/149 (93%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 125 TTTTCCTTTGAAAC-AAAGAAACATGGATTTCTTCACCGATCAAGTAAAGAAGAAATTCT 183
|||| |||||| || ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TTTTTCTTTGAGACAAAAAAAACATGGATTTCTTCACCGATCAAGTAAAGAAGAAATTCT 62
Query 184 CCGACAAGAAACCGGAGAGCTCTGATCCGGAGCCAAACCACAACAAAAACAAACCCGGTC 243
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 CGGACAAGAAACCGGAGAGCTCTGATCCGGAGCCAAACCACAACAAAAACAAACCCGGTC 122
Query 244 ACACGGAGCCAACAACACATAAACCCGGT 272
| || || |||||||||||||||| |||
Sbjct 123 AAACCGATTCAACAACACATAAACC-GGT 150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33891273213
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5