BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03450.1
Length=2194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896317 jgi|Araly1|896317|Al_scaffold_0005_283 3062 0.0
> Ahg896317 jgi|Araly1|896317|Al_scaffold_0005_283
Length=1950
Score = 3062 bits (1658), Expect = 0.0
Identities = 1853/1949 (95%), Gaps = 5/1949 (0%)
Strand=Plus/Plus
Query 149 CGCCGTTTACACTCTCTTCTTCTTCTTCCTCTTAATCTCCTCTGTTTATTCCAAAGCCAC 208
|||||||||| |||| |||||||||||||||||||| |||||||||||||||||| |||
Sbjct 6 CGCCGTTTACTCTCTGGTCTTCTTCTTCCTCTTAATCACCTCTGTTTATTCCAAAGTCAC 65
Query 209 GATTTCAATCTCTCCCCAAACCTTAAACCGATCCGGCGACATAGTCGTGATCAAATGGTC 268
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 66 AATTTCAATCTCTCCACAAACCTTAAACCGAACCGGCGACATAGTCGTGATCAAATGGTC 125
Query 269 CGGCGTCGAATCACCGTCCGATCTCGACTGGTTAGGAATCTACTCGCCACCGGACTCTCC 328
||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 126 CGGCGTCGAGTCACCGTCCGATCTCGATTGGTTAGGAATCTACTCACCACCGGACTCTCC 185
Query 329 TCACGATCACTTCATCGGCTACAAATTCCTCTCCGATTCACCCACGTGGCAATCCGGGTC 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 TCACGATCACTTCATCGGCTACAAATTCCTCTCCGATTCACCCACGTGGCAATCCGGGTC 245
Query 389 GGGTTCGATTTCACTTCCCTTAACCAATCTCCGATCAAATTACACTTTCCGGATCTTTCA 448
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 246 GGGTTCAATTTCACTTCCCTTAACCAATCTCCGATCAAATTACACTTTCCGGATCTTCCA 305
Query 449 TTGGACCCAATCCGAAATAAACCCGAAACACCAAGACCATGATCACAATCCTTTACCCGG 508
|||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||
Sbjct 306 TTGGACCCAATCCGAAATCAACCCGAAACACAAAGACCATGATCACAATCCCTTACCCGG 365
Query 509 AACTCGTCATCTCTTAACCGAATCAAACCAGTTAAATTTCCGGTTCGCTGTTAACCGACC 568
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 366 AACTCGTCATCTCTTAACCGAATCAAACCAGTTAAATTTCCGGTTCGCCGTTAACCGACC 425
Query 569 GGAGCAGATTCATTTAAGTTACACAGATAACATCAACGAGATGAGAGT-AGTGTTTGTAA 627
|||||||||||||||||||||||||||||| ||||||||||||||||| | |||| ||||
Sbjct 426 GGAGCAGATTCATTTAAGTTACACAGATAATATCAACGAGATGAGAGTGA-TGTTCGTAA 484
Query 628 CCGGAGATGGAGAAGAACGAGAAGCTCGCTACGGTGAGGTTAAGGACAAGCTCGATAACA 687
|||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||
Sbjct 485 CCGGAGATGGAGAAGAACGAGAAGCTCGATACGGCGAGGTTAAGGGCAAGCTCGATAACA 544
Query 688 TAGCGGTGGCGCGTGGAGTTAGGTACGAGATAGAACATATGTGTCACGCGCCGGCGAATT 747
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 545 TAGCGGTGGCGCGTGGGGTTAGGTACGAGAGAGAACATATGTGTCACGCGCCGGCGAATT 604
Query 748 CTACAGTCGGATGGAGAGATCCAGGTTGGACATTCGATGCCGTGATGAAGAATCTAAAAC 807
||||| |||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||
Sbjct 605 CTACAATCGGATGGAGAGATCCAGGTTGGATATTTGATTCCGTGATGAAGAATCTGAAAC 664
Query 808 AAGGGATTAGGTATTATTATCAGGTTGGGAGTGATTTAAAAGGATGGAGTGAGATTCATA 867
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 AAGGGCTTAAGTATTATTATCAGGTTGGGAGTGATTTAAAAGGATGGAGTGAGATTCATA 724
Query 868 GCTTTGTTTCTCGAAATGAGGGTTCAGAAGAAACATTAGCTTTCATGTTTGGTGATATGG 927
|||||||||| |||||||| |||||||||||| ||||||||||||||||| |||||||
Sbjct 725 GCTTTGTTTCAAGAAATGAGCATTCAGAAGAAACTTTAGCTTTCATGTTTGGAGATATGG 784
Query 928 GATGTTATACACCTTATACAACATTTATCCGTGGAGAAGAAGAAAGTTTATCAACTGTGA 987
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 785 GATGTTCTACACCTTATAGAACATTTATCCGTGGAGAAGAAGAAAGTTTATCAACTGTGA 844
Query 988 AATGGATTTTAAGAGACATTGAAGCTTTAGGTGATGATAAGCCTGTGATTGTATCACATA 1047
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||
Sbjct 845 AATGGATTTTAAGAGACATTGAAGCTTTAGGTAATGATAAGCCTGCGATTGTATCGCATA 904
Query 1048 TCGGAGATATAAGTTATGCACGAGGTTACTCGTGGATTTGGGATGAGTTCTTTACTCAGA 1107
|||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 905 TCGGAGATTTAAGTTATGCGCGAGGTTACTCGTGGATTTGGGATGAGTTCTTTGCTCAGA 964
Query 1108 TTGAGCCTATTGCTTCTAAAGTGCCTTACCATGTATGTATTGGTAACCATGAGTATGATT 1167
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 965 TTGAGCCTATTGCTTCTAAAGTGCCTTACCATGTTTGTATTGGTAACCATGAGTATGATT 1024
Query 1168 GGCCTAACCAGCCTTGGAAACCAGATTGGGCTGCTTATGTTTATGGTAAAGATAGTGGTG 1227
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 GGCCTATGCAGCCTTGGAAACCAGATTGGGCTGCTTATGTTTATGGTAAAGATAGTGGTG 1084
Query 1228 GTGAATGTGGTGTACCGTATAGTGTTAAGTTCAACATGCCTGGTAATTCAACGGAAGCTA 1287
||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1085 GTGAATGTGGTGTACAGTATAGTGTTAAGTTTAACATGCCTGGTAATTCATCGGAAGCTA 1144
Query 1288 CTGGTATGGTTAAGGGACCTCAAAGTCGGAACCTTTACTATTCTTATGATATGGGTTCTG 1347
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1145 CGGGTATGGTTAAGGGACCTCAAACTCGGAACCTTTACTATTCTTATGATATGGGTTCGG 1204
Query 1348 TTCATTTCGTTTATATTTCGACAGAGACTGATTTTCTTAAAGGTGGGAAGCAGTATAGTT 1407
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1205 TTCATTTCGTTTATATTTCGACAGAGACGGATTTTCTTAAAGGTGGGAAGCAGTATAGTT 1264
Query 1408 TTTTGAAGAGTGATTTGGAGTCTGTTAATAGGAGTAAGACACCGTTTGTTGTTGTCCAAG 1467
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1265 TTTTGAAGAGTGATTTAGAGTCTGTTAATAGGAGCAAGACACCGTTTGTTGTTGTACAAG 1324
Query 1468 GGCATAGACCTATGTACACTACGAGTAGGAAGATCAGAGACGCTGCTATAAGAGAGAAGA 1527
|||||||||| ||||||||||| ||||||||||| ||||||||||| |||||| ||| ||
Sbjct 1325 GGCATAGACCGATGTACACTACAAGTAGGAAGATAAGAGACGCTGCGATAAGACAGAGGA 1384
Query 1528 TGATCGAGCATTTGGAACCGTTGTTAGTGAAGAACAATGTGACGGTTGCTTTATGGGGAC 1587
|||||||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||
Sbjct 1385 TGATCGAGCATTTGGAACCGATGTTTGTGGAGAACAATGTGACTGTTGCTTTATGGGGAC 1444
Query 1588 ATGTACATAGATATGAAAGGTTTTGTGCGATTAGTAACAATACTTGTGGTGAACGTTGGC 1647
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1445 ATGTACATAGATACGAAAGGTTTTGCCCGATTAGTAACAATACTTGTGGTGAACGTTGGC 1504
Query 1648 AAGGAAATCCAGTTCATCTTGTGATTGGTATGGCTGGAAAAGACTCACAACCGATGTGGG 1707
||||||| || ||||||||||||||||| ||||||||||||||| |||||||||| ||||
Sbjct 1505 AAGGAAACCCTGTTCATCTTGTGATTGGCATGGCTGGAAAAGACACACAACCGATTTGGG 1564
Query 1708 AACCGAGAGCTAATCACGAGGATGTCCCGATCTTTCCTCAGCCTGCTAACTCAATGTACC 1767
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1565 AACCGAGACCTAATCACCAGGATGTCCCGATCTTTCCTCAGCCTGCTAACTCAATGTACC 1624
Query 1768 GTGGAGGCGAGTTTGGGTACATTCGTTTGGTTGCTAATAAGGAAAGACTTACTCTTTCTT 1827
| ||||||||||||||||||| |||||||||||||||||| |||||||| |||||||| |
Sbjct 1625 GCGGAGGCGAGTTTGGGTACACTCGTTTGGTTGCTAATAAAGAAAGACTCACTCTTTCGT 1684
Query 1828 ATGTGGGAAACCATGACGGAGAAGTTCATGATGTTGTTGAGATTTTGGCTTCTGGGGAAG 1887
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1685 ATGTGGGAAACCACGACGGAGAAGTTCATGATGTTGTTGAGATTTTGGCTTCAGGGGAAG 1744
Query 1888 TTATTAGCGGTAGTGATGATGGTACTAAAGACTCAAACTTTGGATCAGAATCTGACTTTG 1947
|||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 1745 TTATTAGCGGTAGTGATGATGGTA--AA-GACTCAAACTTTGGATCTGAATCTGACTTTG 1801
Query 1948 CAGTCTTGTGGTACATTGAAGGAGCAAGTGTGATGGTTGTGGGAGTGATTTTTGGGTACT 2007
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1802 CAGTCTTGTGGTACATTGAAGGAGCAAGTGTGATGGTTGTGGGAGTGATTTTGGGGTATT 1861
Query 2008 TTGTCGGTTTTCTTAGTCGTAAAAAGAAAGAATCTGGAGTTGGATCATCTAATCGTAGTT 2067
||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1862 TTGTCGGTTTTTTTAGTCGTAAAAAGAAAGAATCAGGAGTTGGATCATCTAATAGTAGTT 1921
Query 2068 GGATCCAAGTGAAAAACGAGGAGACATGA 2096
|||||||||||||||||||||||||||||
Sbjct 1922 GGATCCAAGTGAAAAACGAGGAGACATGA 1950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82579651160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5