BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03470.1
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484254 jgi|Araly1|484254|fgenesh2_kg.5__246__AT2G03470.1 2087 0.0
> Ahg484254 jgi|Araly1|484254|fgenesh2_kg.5__246__AT2G03470.1
Length=1726
Score = 2087 bits (1130), Expect = 0.0
Identities = 1559/1754 (89%), Gaps = 77/1754 (4%)
Strand=Plus/Plus
Query 1 CACGAACCCGTAACCCTAGCCGCCTTCAAAAATTCCCAATTTGTTTTTTCAAACAAACTT 60
|||||||||||||||||||||||||| ||| ||||||| ||||| |||||| ||
Sbjct 1 CACGAACCCGTAACCCTAGCCGCCTTGGAAATTTCCCAAAAAAAATTTTC-AACAAATTT 59
Query 61 GCTCAGATCCTCTTCTTCTTAGGGATCAATCTTCAAATCAATTGT--TGTTAAAATAAAT 118
|||||||||||||||||| || |||||||||||||||||||||| | |||||||||||
Sbjct 60 TCTCAGATCCTCTTCTTCTCAGAGATCAATCTTCAAATCAATTGTAATATTAAAATAAAT 119
Query 119 GGGATTAAAGCGACCTTATGATGCTGAAGAGATGCAAAAGTGCAATGCTAAGCATGCAAG 178
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 GGGATTAAAGCGACCTTATGATGCTGAAGAGATGCAAGAGTGCAATGCTAAGCATGCAAG 179
Query 179 ACAGCTTAGTTACAAAAACCATAACCAATTTGACGAAGCTATTCCATATCATCATGCTTC 238
|||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 180 ACAGCTTAGTTATAACAACCATAACCAATTTGACGAAGCTATTCCATATCATCATGTTTC 239
Query 239 TATGGAGAAGAAGACAAATGTTTTAGTAGAGGATCTGATTGGTCTCTGTGAGAAT-CCTA 297
|||||| |||||||||| ||||||||| |||||| ||| ||||||||||||| || ||||
Sbjct 240 TATGGACAAGAAGACAAGTGTTTTAGTGGAGGATTTGAGTGGTCTCTGTGAG-ATACCTA 298
Query 298 CGTGGACTAATGATGCAAATCACGTTGACAAGGGTTTTG-AA-----A---CAAC--C-G 345
|||||||||||||||||||||| |||||||||||||||| || | |||| | |
Sbjct 299 CGTGGACTAATGATGCAAATCATGTTGACAAGGGTTTTGAAACGTGGATCTCAACAACTG 358
Query 346 GTTTGTGTCAGGAAGATTCTCAGTCTGGAGTGACGACTCAGTCAGATCTTTCTCATCAAT 405
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 359 ATTTGTGTCAGGAAGATTCTCAGTCTGGAGGGACGACTCAGGCAGATCTTTCTCATCAAT 418
Query 406 CTTCTGGTTCAGATTTCACCT-G-GA--A-----GCCAGTGGAAGATGTTTATACTTGTT 456
||||||||||||||||||||| | || | |||||||||||||||||| |||||
Sbjct 419 CTTCTGGTTCAGATTTCACCTGGAGACCACTTTCTCCAGTGGAAGATGTTTATTCTTGTC 478
Query 457 TGATGAATCAACCTCCTAGGAAACAAGTTCTTGTTGGGTCTAATCATCAAGCGGATATTC 516
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 479 TGATGAATCAACCTCCTAGGAAACAAGTTCTTGTTGGGTCTAATCACCAGGCGGATATTC 538
Query 517 CCGAGTTTGTCAAGGAAGAGATTCTTGATCAGTCAGAGGCTCGAACTAAGGAGGACTTAG 576
| |||||||||||||||||| |||||| | | | | | |||||||
Sbjct 539 CTGAGTTTGTCAAGGAAGAGGTTCTTG----G-C----G---G---T------GACTTAG 577
Query 577 AAGGGAAGCTGATGAGAAAGTGTGTGATACCAATGTCTGACTCTGACCTTTGTGGAACCG 636
|||||||||||||| ||||||| | |||||||||||| |||| ||||||||||||||||
Sbjct 578 AAGGGAAGCTGATGGGAAAGTGCATAATACCAATGTCTAACTCGGACCTTTGTGGAACCG 637
Query 637 GTCAAGGAAGAAAGGAATGTCTTTGCCTAGATAAAGGCTCTATTAGATGTGTGCGGCGAC 696
||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 638 GTCAAGGAAGAAAGGAATGTCTTTGCCCGGATAAAGGCTCCATTAGATGCGTGCGGCGAC 697
Query 697 ATATCATTGAAGCCAGAGAGAGTTTGGTTGAAACTATTGGATATGAAAGGTTTATGGAGC 756
||||||| |||||||||||||| || |||||| ||||||||||||||||||||||||||
Sbjct 698 ATATCATGGAAGCCAGAGAGAGCCTGATTGAAAATATTGGATATGAAAGGTTTATGGAGC 757
Query 757 TAGGGTTATGTGAGATGGGGGAGGAAGTTGCGAGTTTATGGACAGAGGAAGAAGAAGATC 816
||||||| ||||||||||||||||||||||| || ||||||| ||||| ||||||||||
Sbjct 758 TAGGGTTCTGTGAGATGGGGGAGGAAGTTGCAAGCGTATGGACCGAGGACGAAGAAGATC 817
Query 817 TCTTTCACAAGGTTGTATACTCCAATCCTTTCTCAGCGGGTCGTGACTTCTGGAAGCAAT 876
||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||
Sbjct 818 TCTTTCACAAGGTTGTATACTCCAATCCTTTTTCAGTGGGTCGCGACTTCTGGAAGCAAT 877
Query 877 TAAAGGGAACGTTTCCTTCAAGAACCATGAAGGAGTTGGTTAGCTACTACTTCAATGTCT 936
|||||| | |||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 878 TAAAGGCAGTGTTTCCTTCAAGAACCATGAAGGAATTTGTTAGCTACTACTTCAATGTCT 937
Query 937 TCATCTTGCGGAGACGGGGTATTCAGAATCGGTTCAAAGCCCTAGATGTTGACAGTGATG 996
||||||||||||||||||||| ||||||||||||||||| |||||| || || |||||||
Sbjct 938 TCATCTTGCGGAGACGGGGTACTCAGAATCGGTTCAAAGACCTAGACGTCGATAGTGATG 997
Query 997 ATGACGAGTGGCAAGTTGAATACAACAT-TTTTAACAGCACCAAATCTTTAGATGAGGAA 1055
|||||||||||||||| || |||||||| || | ||||||||||||||||||||||||||
Sbjct 998 ATGACGAGTGGCAAGTAGAGTACAACATCTTCT-ACAGCACCAAATCTTTAGATGAGGAA 1056
Query 1056 GACAACAATGGAAATCGCTCCTCATatgaagataac---------g-ag--gaagaagaa 1103
|||||||||||||||||||||||| ||||||||||| | || |||||||||
Sbjct 1057 GACAACAATGGAAATCGCTCCTCACATGAAGATAACGAGGAAGAAGAAGAAGAAGAAGAA 1116
Query 1104 gaaaccagcagca---atgatgatgatga--a-gaagaagaagaggaagaCGACTCATCA 1157
||||||||||||| ||||||||||||| | |||| |||||| ||||||||||| ||
Sbjct 1117 GAAACCAGCAGCAGTGATGATGATGATGATGATGAAGGAGAAGAAAAAGACGACTCACCA 1176
Query 1158 AGTAACGATGCTCATTGTGTAGATACGGATAAGGCTTCAAGAGACGGTTTTGGTGAAGAA 1217
||||| ||||||||||||||| ||| |||||||| |||||||||| || ||||||| ||
Sbjct 1177 AGTAATGATGCTCATTGTGTATATATGGATAAGGTTTCAAGAGACAGTGTTGGTGAGGAG 1236
Query 1218 GTAAATGTGGAAGACGACTCATGTATGTCCTTCGAGTTACAAGACTCCAACTTGATCTTC 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 GTAAATGTGGAAGACGACTCATGTATGTCCTTCGAGTTACAAGACTCCAACTTGATCTTC 1296
Query 1278 AGTCACAACCCAAT-CAAAAACAGAGAGTGCCACAGATCTGGTGAAGATTCATATTCATT 1336
| ||||| |||||| ||||| |||||||||||||||||||||||| || || ||||||||
Sbjct 1297 ACTCACAGCCCAATTCAAAA-CAGAGAGTGCCACAGATCTGGTGATGACTCGTATTCATT 1355
Query 1337 TGATGATCAGAGATTCACATCAGATTGTTGGAACAAGAACAACGATCTACTACCAACTTC 1396
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1356 TGATGATCAGAGATTCACATCAGATTGTTGGAACAAGAACAACGATCTTCTACCAACTTC 1415
Query 1397 AAACATTATTGAGGAGATATTTGGTCAAGACGATTGGGGA-GATAAAGATGATAATAACT 1455
|||||||||||||||||||||||||||||| ||||||| | ||||| |||||| ||||||
Sbjct 1416 AAACATTATTGAGGAGATATTTGGTCAAGATGATTGGG-ACGATAATGATGATGATAACT 1474
Query 1456 TGAAGGAGAAGTAAATAAAAAGTTTTCTTCTCCTCTTTCATGGATT-CTGCAGAtttttt 1514
|||||| ||||||| | ||||| ||||||||| |||| ||| |||| |||||||||||||
Sbjct 1475 TGAAGGGGAAGTAACTGAAAAGCTTTCTTCTCTTCTTCCATAGATTTCTGCAGATTTTTT 1534
Query 1515 ttttCTTAAGTGAATTAGATAAAGATGCAGAAGTTTGAAAGTTTCATCTTTAGGAGTTTT 1574
||||||||||||||||| |||||| ||||||||||||||||||| ||||| ||||||||
Sbjct 1535 TTTTCTTAAGTGAATTATTTAAAGAAGCAGAAGTTTGAAAGTTTCCTCTTTGGGAGTTTT 1594
Query 1575 GT-GTTGGTTAAGGTTGAAGAAGAAAGGACTTCCTGATTGATTTGACTCTGTAAAAAATG 1633
| ||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||| |
Sbjct 1595 TTTGTTGGTTTAGGTTGAAGAAGAAGGGACTTCTTGATTGATTTGACTATGTAAAAAA-G 1653
Query 1634 CTATTCAAATCCATGAACCtttttttCTC-TAGTTGTTTT-AGTCCTCAAGATCTCAATG 1691
||||| ||||||| ||||||||||| || | || |||| |||| ||||||||||||||
Sbjct 1654 CTATTAAAATCCAGGAACCTTTTTT-CTAGTTTTTTTTTTGAGTCTTCAAGATCTCAATG 1712
Query 1692 TACATTATTATGGT 1705
||||||||| ||||
Sbjct 1713 TACATTATTTTGGT 1726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64029701845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5