BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03480.1
Length=2444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896320 jgi|Araly1|896320|Al_scaffold_0005_286 2098 0.0
Ahg471543 jgi|Araly1|471543|fgenesh2_kg.1__1497__AT1G13860.3 1029 0.0
> Ahg896320 jgi|Araly1|896320|Al_scaffold_0005_286
Length=1860
Score = 2098 bits (1136), Expect = 0.0
Identities = 1230/1276 (96%), Gaps = 4/1276 (0%)
Strand=Plus/Plus
Query 321 ATGAGAGGTTCTTGGTACAAGAGTGTTTCCTCTGTTTTTGGTCTCAGACCACGGATCAGA 380
|||||| |||||||||||||||||||| |||| ||||||||||| |||||||||||||||
Sbjct 1 ATGAGAAGTTCTTGGTACAAGAGTGTTGCCTCGGTTTTTGGTCTTAGACCACGGATCAGA 60
Query 381 GGGTTG-TTATTCTTCATTGTTGGTGTTGTGGCTCTAGTTACTATTTTAGCACCATTGAC 439
|| ||| || ||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 61 GGATTGCTT-TTCTTCATTGTCGGTGTTGTGGCTTTAGTTACTATTTTAGCACCATTGAC 119
Query 440 ATCTAATTCGTATGATTCTTCGTCAAGTTCGACACTTGTGCCGAACATTTATAGTAACTA 499
||| |||||||||||||||||| | ||||||||||||||||| |||||||||||||||||
Sbjct 120 ATCCAATTCGTATGATTCTTCGACGAGTTCGACACTTGTGCCCAACATTTATAGTAACTA 179
Query 500 TAGGAGGATAAAGGAGCAAGCTGCTGTTGATTATCTTGATCTGAGGTCTCTTTCTTTAGG 559
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 180 TAGGAGGATAAAGGAGCAAGCTGCTGTTGATTATCTTGATTTGAGGTCTCTTTCTTTAGG 239
Query 560 GGCTAGTTTAAAAGAGTTTCCTTTTTGTGGTAAAGAAAGAGAAAGTTATGTGCCTTGTTA 619
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 240 GGCTAGTTTAAAAGAGTTTCCTTTGTGTGGTAAAGAAAGAGAAAGCTATGTGCCTTGTTA 299
Query 620 TAACATAACTGGGAATTTGCTTGCTGGGCTTCAAGAGGGTGAGGAGTTAGATCGACATTG 679
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TAATATAACTGGGAATTTGCTTGCTGGGCTTCAAGAGGGTGAGGAGTTAGATCGACATTG 359
Query 680 CGAGTTTGAAAGAGAGAAGGAAAGATGTGTAGTTCGTCCTCCGAGAGATTATAAAATACC 739
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 TGAGTTTGAAAGAGAGAAGGAAAGATGTGTAGTTCGACCTCCGAGAGATTATAAAATACC 419
Query 740 ACTTAGGTGGCCACTTGGTAGAGATATCATATGGAGTGGGAACGTGAAGATTACCAAAGA 799
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 ACTTAGGTGGCCACTTGGTAGAGATATCATATGGAGTGGTAACGTGAAGATTACCAAAGA 479
Query 800 CCAGTTTCTTTCTTCAGGAACTGTGACAACGAGGTTAATGTTGCTTGAAGAGAATCAAAT 859
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 480 CCAGTTTCTTTCGTCAGGAACCGTGACAACGAGGTTAATGTTGCTTGAAGAGAATCAAAT 539
Query 860 AACCTTTCACTCGGAGGACGGCCTGGTCTTTGATGGGGTCAAAGACTATGCTCGTCAAAT 919
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TACTTTTCACTCGGAGGACGGCCTGGTCTTTGATGGGGTCAAAGACTATGCTCGTCAAAT 599
Query 920 TGCTGAGATGATAGGTTTAGGAAGTGATACTGAATTTGCTCAAGCGGGTGTACGGACTGT 979
|||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 600 TGCTGAGATGATTGGTTTAGGAAGTGATACTGAGTTTGCGCAAGCGGGTGTACGGACTGT 659
Query 980 GTTAGACATTGGTTGCGGATTTGGTAGCTTTGGTGCTCATTTAGTGTCTTTGAAGCTGAT 1039
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 GTTAGACATTGGTTGCGGCTTTGGTAGCTTTGGTGCACATTTAGTGTCTTTGAAGCTGAT 719
Query 1040 GCCTATATGTATTGCTGAGTATGAGGCAACTGGGAGCCAAGTTCAGTTAGCTCTAGAGAG 1099
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 720 GCCTATATGTATCGCTGAGTATGAGGCAACTGGGAGCCAAGTCCAGTTAGCTCTAGAGAG 779
Query 1100 AGGCCTTCCTGCAATGATTGGCAATTTCTTTTCAAAACAGCTTCCTTATCCAGCACTGTC 1159
|||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 780 AGGCCTTCCTGCAATGATTGGCAATTTCTTTTCAAAACAGCTTCCTTACCCGGCATTGTC 839
Query 1160 TTTTGATATGGTCCATTGTGCTCAATGTGGCACTACTTGGGATATCAAAGATGCAATGCT 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTTTGATATGGTCCATTGTGCTCAATGTGGCACTACTTGGGATATCAAAGATGCAATGCT 899
Query 1220 ACTTTTGGAAGTGGATCGTGTTCTGAAACCCGGGGGATACTTTGTTTTAACTTCTCCCAC 1279
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 900 ACTTTTGGAAGTGGATCGTGTTCTGAAACCCGGGGGATACTTTGTTTTAACTTCCCCCAC 959
Query 1280 AAACAAAGCACAGGGAAACTTACCAGATACCAAGAAAACGAGCATCTCAACACGGGTGAA 1339
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 960 AAACAAAGCACAAGGAAACTTACCAGATACCAAGAAAACGAGCATCTCAACACGGGTGGA 1019
Query 1340 TGAGTTATCTAAGAAAATCTGTTGGAGTCTAACAGCTCAGCAGGATGAGACGTTTCTTTG 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGAGTTATCTAAGAAAATCTGTTGGAGTCTAACAGCTCAGCAGGATGAGACGTTTCTTTG 1079
Query 1400 GCAGAAAACT-TCTGATTCAAGTTGCTATTCTTCTCGTTCGCAAGCTTCTATACCTCTTT 1458
|||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1080 GCAGAAAACTGTA-GATTCAAGTTGCTATTCGTCTCGTTCGCAAGCTTCTATACCTCTTT 1138
Query 1459 GCAAAGATGGAGATAGCGTTCCGTATTACCACCCATTGGTTCCATGTATAAGCGGAACCA 1518
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1139 GCAAAGATGGAGATAGTGTTCCGTATTACCACCCACTGGTTCCATGTATAAGCGGAACCA 1198
Query 1519 CGAGTAAACGCTGGATTTCTATACAGAACAGGTCTGCTGTTGCAGGAACAACCTCTGCCG 1578
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1199 CAAGTAAACGCTGGATTCCTATACAGAACAGGTCTGCTGTTGCAGGAACAACCTCTGCTG 1258
Query 1579 GGCTTGAAATTCATGG 1594
||||||||||||||||
Sbjct 1259 GGCTTGAAATTCATGG 1274
Score = 883 bits (478), Expect = 0.0
Identities = 527/551 (96%), Gaps = 1/551 (0%)
Strand=Plus/Plus
Query 1591 ATGGAAAATCAGCTCTGAAAAACTATTGGTCCTTGCTTACACCTCTAATTTTCTCTGACC 1650
|||| | ||||||||||| ||||||||||||||||||||||||| | |||||||||||||
Sbjct 1311 ATGG-AGATCAGCTCTGAGAAACTATTGGTCCTTGCTTACACCTTTGATTTTCTCTGACC 1369
Query 1651 ATCCGAAGAGACCCGGTGATGAGGATCCTCTCCCGCCTTTCAACATGATACGCAATGTGA 1710
| || ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1370 ACCCAAAGAGACCCGGTGATGAAGATCCTCTCCCGCCTTTTAACATGATACGCAATGTGA 1429
Query 1711 TGGACATGCATGCTCGTTTTGGGAATTTAAATGCCGCTTTACTCGACGAAGGAAAATCTG 1770
|||||||| ||||||||||||||||||||||||| || ||||| ||||||||||| || |
Sbjct 1430 TGGACATGAATGCTCGTTTTGGGAATTTAAATGCAGCCTTACTTGACGAAGGAAAGTCCG 1489
Query 1771 CTTGGGTAATGAACGTCGTCCCAGTCAATGCACGTAATACTCTTCCTATCATACTTGATC 1830
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1490 CTTGGGTAATGAACGTTGTCCCAGTCAAGGCACGTAATACTCTTCCTATCATACTTGATC 1549
Query 1831 GTGGTTTCGCCGGTGTTCTACATGACTGGTGTGAACCATTCCCGACATATCCTCGAACAT 1890
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 GTGGTTTCGCCGGTGTCCTACATGACTGGTGTGAACCATTCCCGACATATCCTCGAACAT 1609
Query 1891 ATGACATGCTTCATGCCAATGAACTTCTCACACATCTTAGCTCAGAACGATGCAGCCTAA 1950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 ATGACATGCTTCATGCCAATGAACTTCTCACACATCTTAGCTCAGAACGATGCAGCCTAA 1669
Query 1951 TGGACTTGTTCTTGGAGATGGACCGGATTCTTCGCCCTGAGGGATGGGTTGTTCTAAGCG 2010
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 TGGACTTATTCTTGGAGATGGACCGGATTCTTCGCCCTGAGGGATGGGTTGTTCTAAGCG 1729
Query 2011 ACAAAGTGGGAGTAATCGAGATGGCTCGAGCACTTGCAGCTCGAGTGCGTTGGGAAGCAA 2070
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||
Sbjct 1730 ACAAAGTGGGAGTAATCGAGATGGCTCGCGCACTTGCAGCTCGAGTACGTTGGGAATCAC 1789
Query 2071 GAGTCATTGATCTTCAAGATGGTAGTGACCAAAGACTTCTCGTCTGTCAAAAACCATTCA 2130
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1790 GAGTCATTGATCTTCAAGATGGTAGTGACCAAAGACTTCTCGTCTGTCAAAAACCATTCC 1849
Query 2131 TCAAAAAATAA 2141
|||||||||||
Sbjct 1850 TCAAAAAATAA 1860
> Ahg471543 jgi|Araly1|471543|fgenesh2_kg.1__1497__AT1G13860.3
Length=2497
Score = 1029 bits (557), Expect = 0.0
Identities = 812/935 (87%), Gaps = 18/935 (2%)
Strand=Plus/Plus
Query 669 GATC-GACATTGCGAGTTTGAAAGAG-AGAAGGAAAGATGTGTAGTTCGTCCTCCGAGAG 726
|||| || |||| ||||||| ||||| || |||||||||||||||||||||||| || |
Sbjct 667 GATCGGA-ATTGTGAGTTTGTAAGAGAAG-GGGAAAGATGTGTAGTTCGTCCTCCAAGGG 724
Query 727 ATTATAAAATACCACTTAGGTGGCCACTTGGTAGAGATATCATATGGAGTGGGAACGTGA 786
||||||||||||||||| | ||||| ||||||||||||| ||||||| |||||| ||||
Sbjct 725 ATTATAAAATACCACTTCGATGGCCTGTTGGTAGAGATATTATATGGACTGGGAATGTGA 784
Query 787 AGATTACCAAAGACCAGTTTCTTTCTTCAGGAACTGTGAC-AACGAGGTTAATGTTGCTT 845
||||||| ||||| ||||||||||| ||||| ||| |||| || ||| |||||||||||
Sbjct 785 AGATTACTAAAGATCAGTTTCTTTCATCAGGGACTATGACTAA-AAGGCTAATGTTGCTT 843
Query 846 GAAGAGAATCAAATAACCTTTCACTCGGAGGACGGCCTGGTCTTTGATGGGGTCAAAGAC 905
|||||||||||||| || ||||||||||| || ||| || ||||||| |||||||||||
Sbjct 844 GAAGAGAATCAAATTACATTTCACTCGGAAGATGGCTTGATCTTTGACGGGGTCAAAGAT 903
Query 906 TATGCTCGTCAAATTGCTGAGATGATAGGTTTAGGAAGTGATACTGAATTTGCTCAAGCG 965
|| ||| |||||||||||||||||| || |||||||| |||| ||| ||| |||||||
Sbjct 904 TACGCTTTTCAAATTGCTGAGATGATTGGATTAGGAAGCGATATTGAGTTTCCTCAAGCT 963
Query 966 GGTGTACGGACTGTGTTAGACATTGGTTGCGGATTTGGTAGCTTTGGTGCTCATTTAGTG 1025
||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||
Sbjct 964 GGTATACGGACTGTGTTAGACATCGGTTGCGGATTTGGTAGCTTTGGTGCACATCTAGTG 1023
Query 1026 TCTTTGAAGC-TGATGCCTATATGTATTGCTGAGTATGAGGCAACTGGGAGCCAAGTTCA 1084
|||||||| | |||||||||||||||| || ||||||||| ||| ||| |||||||| ||
Sbjct 1024 TCTTTGAA-CGTGATGCCTATATGTATAGCAGAGTATGAGACAAGTGGAAGCCAAGTCCA 1082
Query 1085 GTTAGCTCTAGAGAGAGGCCTTCCTGCAATGATTGGCAATTTCTTTTCAAAACAGCTTCC 1144
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1083 GTTAGCTCTAGAGAGAGGCCTTCCTGCAATGATTGGAAATTTCTTTTCGAAACAGCTTCC 1142
Query 1145 TTATCCAGCACTGTCTTTTGATATGGTCCATTGTGCTCAATGTGGCACTACTTGGGATAT 1204
|||||||| | || ||||| |||||||| |||||||||||||| | ||||||||||||
Sbjct 1143 ATATCCAGCTTTATCATTTGACATGGTCCACTGTGCTCAATGTGGGATTACTTGGGATAT 1202
Query 1205 CAAAGATGCAATGCTACTTTTGGAAGTGGATCGTGTTCTGAAACCCGGGGGATACTTTGT 1264
|||||||||||||||||||| ||||||||||||||||| || |||||||| || |||||
Sbjct 1203 AAAAGATGCAATGCTACTTTTAGAAGTGGATCGTGTTCTCAAGCCCGGGGGTTATTTTGT 1262
Query 1265 TTTAACTTCTCCCACAAACAAAGCACAGGGAAACTT-ACCAGATACCAAGAAAACGAGCA 1323
|||||| ||||| |||| ||||||||||||||| || || ||||| |||||||| || |
Sbjct 1263 TTTAACCTCTCCTACAAGCAAAGCACAGGGAAA-TTCTCCTGATACTAAGAAAACAAGTA 1321
Query 1324 TCTCAACACGGGTGAATGAGTTATCTAAGAAAATCTGTTGGAGTCTAACAGCTCAGCAGG 1383
|||||||||| ||| |||||||||||||||||||||| |||||||| ||| |||||| |
Sbjct 1322 TCTCAACACGAGTGGATGAGTTATCTAAGAAAATCTGCTGGAGTCTCTCAGGTCAGCAAG 1381
Query 1384 ATGAGACGTTTCTTTGGCAGAAAACTTCTGATTCAAGTTGCTATTCTTCTCGTTCGCAAG 1443
||||||||||||||||||||||| | | ||| ||| |||||| || ||||| |||||||
Sbjct 1382 ATGAGACGTTTCTTTGGCAGAAAGCAGCAGATCCAAATTGCTACTCATCTCGCTCGCAAG 1441
Query 1444 CTTCTATACCTCTTTGCAAAGATGGA-GATAGCGTTCCGTATTACCA-CCCATTGGTTCC 1501
|||||||||||||||||||||||| | ||||| |||||||||||||| ||| ||| ||||
Sbjct 1442 CTTCTATACCTCTTTGCAAAGATG-ATGATAGTGTTCCGTATTACCAACCCCTTG-TTCC 1499
Query 1502 ATGTATAAGCGGAACCACGAGTAAACGCTGGATTTCTATACAGAACAGGTCTGCTG-TTG 1560
||||||||| ||||||| ||| |||||||||||| |||| ||||| |||||| | ||
Sbjct 1500 ATGTATAAGTGGAACCAAGAGCAAACGCTGGATTCCTATTCAGAATAGGTCTAAAGCTTC 1559
Query 1561 CAGGAACAACCTCTGCCGG-GCTTGAAATTCATGG 1594
| ||||||| | || | | |||||||| ||||||
Sbjct 1560 C-GGAACAAGTT-TGTCTGAGCTTGAAAATCATGG 1592
Score = 621 bits (336), Expect = 7e-177
Identities = 483/555 (87%), Gaps = 6/555 (1%)
Strand=Plus/Plus
Query 1598 ATCAGCTCTGAAAAACTATTGGTCCTTGCTTACACCTCTAATTTTCTCTGACCATCCGAA 1657
|||||| |||||||||||||||||||||||||||||| | |||||||| ||||| || ||
Sbjct 1635 ATCAGCCCTGAAAAACTATTGGTCCTTGCTTACACCTTTGATTTTCTCAGACCACCCAAA 1694
Query 1658 GAGACCCGGTGATGAGGATCCTCTCCCGCCTTTCAACATGATACGCAATGTGATGGACAT 1717
||||| || ||||| |||||| |||| ||||| ||||||||||||||| ||||||||
Sbjct 1695 AAGACCTGGCGATGAAGATCCTGTCCCACCTTTTTACATGATACGCAATGCCATGGACAT 1754
Query 1718 GCATGCTCGTTTTGGGAATTTAAATGC-CGCTTTACTCGACGAAGGAAAATCTGCTTGGG 1776
| ||||||||| ||||||| | ||| | ||| ||||| || |||||||||| | |||||
Sbjct 1755 GAATGCTCGTTATGGGAATCTGAAT-CTCGCCTTACTTAACCAAGGAAAATCAGTTTGGG 1813
Query 1777 TAATGAACGTCGTCCCAGTCAATGCACGTAATACTCTTCCTATCATACTTGATCGTGGTT 1836
| ||||| || |||||||| || ||||||||||||||||||| ||||||||||| ||||
Sbjct 1814 TGATGAATGTTGTCCCAGTTAAAACACGTAATACTCTTCCTATAATACTTGATCGAGGTT 1873
Query 1837 TCGCCGGTGTTCTACATGACTGGTGTGAACCATTCCCGACATATCCTCGAACATATGACA 1896
| ||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 1874 TTGCCGGCGTTCTACATGACTGGTGTGAACCATTCCCTACTTATCCGCGAACATATGACA 1933
Query 1897 TGCTTCATGCCAATGAACTTCTCACACATCTTAGCTCAGAACGATGCAGCCTAATGGACT 1956
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1934 TGCTTCATGCCAATGAACTTCTCACACATCTTAGCTCAGAACGGTGCAGCCTAATGGACT 1993
Query 1957 TGTTCTTGGAGATGGACCGGATTCTTCGCCCTGAGGGATGGGTTGTTCTAAGCGACAAAG 2016
||||||||||||||||||||||||| |||||||||||||||||||| ||||| || || |
Sbjct 1994 TGTTCTTGGAGATGGACCGGATTCTCCGCCCTGAGGGATGGGTTGTGCTAAGTGATAA-G 2052
Query 2017 -TGGGAGTAATCGAGATGGCTCG-AGCACTTGCAGCTCGAGTGCGTTGGGAAGCAAGAGT 2074
| ||||| || |||||||| || | || |||| ||||| || || ||||||||||||||
Sbjct 2053 CTTGGAGTGATAGAGATGGCGCGTA-CATTTGCTGCTCGTGTACGCTGGGAAGCAAGAGT 2111
Query 2075 CATTGATCTTCAAGATGGTAGTGACCAAAGACTTCTCGTCTGTCAAAAACCATTCATCAA 2134
||| ||| || |||| |||||||||||| | || || || || |||||||| ||| | ||
Sbjct 2112 CATCGATATTGAAGACGGTAGTGACCAACGGCTCCTTGTTTGCCAAAAACCTTTCCTAAA 2171
Query 2135 AAAATAACTCAAAAG 2149
|||||||||||||||
Sbjct 2172 AAAATAACTCAAAAG 2186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92102212410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5