BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03500.1
Length=1666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936142 jgi|Araly1|936142|scaffold_500333.1 2071 0.0
> Ahg936142 jgi|Araly1|936142|scaffold_500333.1
Length=1343
Score = 2071 bits (1121), Expect = 0.0
Identities = 1261/1328 (95%), Gaps = 11/1328 (1%)
Strand=Plus/Plus
Query 215 ATATGGCGTCCTCATCAGAACTAAGCTTGGATTGCAAGCCACAAAGCTACTCTATGCTTT 274
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23 ATATGGCTTCTTCATCAGAACTAAGCTTGGATTGCAAGCCACAAAGCTACTCTATGCTTT 82
Query 275 TGAAATCCTTTGGAGATAACTTTCAGAGCGATCCAACCACACATAAGCTTGAAGATCTTC 334
||||||| ||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 83 TGAAATCATTTGGTGATAACTTTCAGAGCGATCCAACTACACAAAAGCTCGAAGATCTTC 142
Query 335 TCTCTCGCCTAGAACAAGAACGTCTCAAGATCGATGCCTTCAAACGCGAGCTTCCCCTTT 394
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 143 TTTCTCGCCTTGAACAAGAACGTCTCAAGATCGATGCCTTCAAGCGCGAGCTTCCCCTTT 202
Query 395 GCATGCAACTCCTTAACAATGCTGTGGAAGTTTACAAACAACAACTAGAAGCATATAGAG 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 GCATGCAACTCCTTAACAATGCTGTGGAAGTTTACAAACAACAACTAGAAGCATATAGAG 262
Query 455 CAAATAGTAATAACAATAACCAAAGTGTTGGTACAAGACCAGTTCTCGAAGAGTTCATAC 514
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 263 CAAATAGTAATAACAATAACCAAAGTGTTGCCACAAGACCAGTTCTTGAAGAGTTCATAC 322
Query 515 CCTTAAGGAACCAACCCGAAAAGACAAACAACAAAGGAAGTAATTGGATGACGACTGCTC 574
|||||||||||||||||||||| |||||||| | |||||||| ||||||||||||||||
Sbjct 323 CCTTAAGGAACCAACCCGAAAAAACAAACAA-A--GGAAGTAACTGGATGACGACTGCTC 379
Query 575 AGCTATGGAGCCAATCCGAAACCAAACCAAAAAACATTGATTCAACTACTGATCAATCTC 634
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 AGCTTTGGAGCCAATCCGAAACCAAACCAAAAAACATTGATTCAACTACTGATCAATCTC 439
Query 635 TTCCCAAAGACGAGATTAATAGTAGTCCGAAACTCGGACATTTTGATGCAAAACAAAGAA 694
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 440 TTCCCAAAGACGAGATTATTAGTAGTCCGAAACTCGGACATTTTGATGCAAAACAAAGAA 499
Query 695 ATGGCAGCGGTGCTTTTCTTCCCTTCTCTAAGGAACAATCTTTGCCTGAATTAGCTCTAT 754
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 ATGGCAACGGTGCTTTTCTTCCCTTCTCTAAGGAACAATCTTTGCCTGAATTAGCTCTAT 559
Query 755 CCACGGAGGTCAAGAGGGTCTCTCCGACCAACGAACATACTAATGGCCAAGACGGTAATG 814
| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 560 CTACGGAGGTCAAGAGGGTGTCCCCGACCAACGAGCATACTAATGGCCAAGACGGTAATG 619
Query 815 ATGAGAGCATGATCAACAATGataataac--ta-taataataataataataaCAATTCGA 871
||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 620 ATGAGAGCATGATCAACAATGATAATAACAATAATAATAATAATAATAATAACAATTCAA 679
Query 872 ACAGCAATGGAGTTTCTTCTACAACGAGTCAAAGTAATAGAAAGGCACGACGTTGCTGGT 931
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 680 ACAGCAATGGAGTTTCTTCTACAACAAGTCAAAGTAATAGAAAGGCACGACGTTGCTGGT 739
Query 932 CGCCGGACTTGCACCGGAGATTTGTCCAAGCTCTTCAAATGCTTGGTGGCTCGCAAGTGG 991
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 740 CGCCGGACTTGCACCGGAGATTTGTCCAAGCTCTTCAAATGCTTGGTGGTTCGCAAGTGG 799
Query 992 CTACACCTAAACAAATAAGGGAACTCATGAAAGTTGATGGTTTGACCAATGATGAAGTCA 1051
||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 800 CTACACCGAAACAAATAAGGGAACTTATGAAAGTTGATGGCCTGACCAATGATGAAGTCA 859
Query 1052 AAAGCCATCTCCAGAAGTATCGGCTTCACACTAGAAGACCAAGCCCAAGCCCACAAACGT 1111
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 860 AAAGCCATCTCCAGAAGTATCGGCTTCACACTAGAAGACCAAGCCCAAGCCCACAAACAT 919
Query 1112 CAGGTGGGCCAGGTCCACATTTGGTGGTCCTAGGTGGCATATGGGTTCCACCGGAGTACA 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 CAGGTGGGCCAGGTCCACATTTGGTGGTCCTAGGTGGCATATGGGTTCCACCGGAGTACA 979
Query 1172 CCTCCGCACATGGTGGCACTCCGACTCTCTaccaccaccaagtccaccaccaccatacca 1231
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 980 CCACCGCACATGGTGGCACTCCGACTCTCTACCACCACCAAGTTCACCACCACCACACCA 1039
Query 1232 acacggcagggccgcctccaccacacTTTTGCTCCTCTCAAGAATTCTACACAACTCCAC 1291
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1040 CCACGGCAGGGCCGCCACCACCACACTTTTGCTCCTCTCAAGAATTCTACACAACCCCAC 1099
Query 1292 CGCCTCCTCAGCCGCTCCACCACCACCACTTTCAAACGTTTAACGGTTCATCCGGTGGCA 1351
||||| | ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1100 CGCCTACGCAGCCGCTCCACCACCACCACTTTCAAACATTTAACGGCTCATCCGGTGGCG 1159
Query 1352 CCGCCTCTACCGATTCTACTCATCATCAGGTGACGGACAGTC-CCACAGTTGAAGGGAAG 1410
||||||| |||||||| |||||||||||| | |||||||| | |||| | ||||| |||
Sbjct 1160 CCGCCTCCACCGATTCAACTCATCATCAGTTAACGGACAG-CGCCACCGAAGAAGGAAAG 1218
Query 1411 TCACCGGAGAGTGGTGGTGGAGAGAGAAAAGGGTTGGCTGCTCTTAGGGAAGAATGTGAA 1470
|| ||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 1219 TCGTCGGAGAGTGGTGGCGGAGAGAGAAAAGGGTTGGCTGCTCTTAGGGATGACGGTGAA 1278
Query 1471 GATCACAGCAATATTAATGGAAGTGAAATAACTCTCAAATTCTaaaaaaaaTAAAGATTC 1530
||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1279 GATCAGAGCAATATTAATGGAAGTGAAATAACTCTCAAATTCTAAAAAAAA-A--GATTC 1335
Query 1531 TTGATTAA 1538
||||||||
Sbjct 1336 TTGATTAA 1343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62468001800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5