BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03505.1
Length=866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936143 jgi|Araly1|936143|scaffold_500334.1 802 0.0
> Ahg936143 jgi|Araly1|936143|scaffold_500334.1
Length=543
Score = 802 bits (434), Expect = 0.0
Identities = 507/541 (94%), Gaps = 10/541 (2%)
Strand=Plus/Plus
Query 61 AAAAACTTGCTTTGGTCCATCATGAGATTGCTTCTTAGTCTCTTGTTTCTCTTGGCTTTA 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 AAAAACTTGCTTTGGTCCATCATGAGATTGCTTCTTGGTCTCTTGTTTCTCTTGGCTTTA 60
Query 121 ACCACCTACTCAAGTGCAACTTATTGTCTATGTAGAGATGGTGTTGGAGAGAAAGATCTT 180
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 61 ACCACCTACTCAAGTGCAACTTATTGTCTATGTAGAGATGGTATTGAAGAGAAAGATCTT 120
Query 181 CAAACATCGATAGATTATGCATGTGGAGTTTTAAAAGATTGTAATCCTATTCATGAGAAA 240
|||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 121 CAAACATCAATAGACTATGCATGTGGAGTTTTAAAAGATTGTAATCAAATTCATGACAAA 180
Query 241 GGTCCTTGTTATCAACCAAACACCATCAAGAGTCATTGTGATTGGGCGGTTAATACTTAT 300
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 GGTCCTTGTTACCAACCAAACACTGTCAAGAGTCATTGTGATTGGGCGGTTAATACTTAT 240
Query 301 TTCCAAAGATTTGGTCAAATCTCTGGAAGCTGTAATTTCTCAGGAACTGCTACTACCAGC 360
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCCAAAGATCTGGTCAAGTCTCTGGAAGCTGTAATTTCTCAGGAACTGCTACTACCAGC 300
Query 361 CAAAATCTTCCTTCAACTGTGGTTACTGGTTGCTTATATCCTTCAAGTCCAGGAAGTGCA 420
||||||| ||||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct 301 CAAAATCCTCCTTCAACTGTGGTTACTGGTTGCATCTATCCTTCAAGTCCTGGAAGTGCA 360
Query 421 GGGACAACTCCCACGACAGGTACTCCTTCAGGAACACAGAC-GTTTCCGGGACCTCCTGC 479
||||||||||| ||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct 361 GGGACAACTCCAACGACCGGAACTCCTTCAGGAACACA-ACCGTTTCCGGGACCTCCTGC 419
Query 480 GTTTGGTCCGGCCGGAGATTTTGATCCTTCAGGCAATAATGGTGC-TCCGAGTTTGTTCA 538
||||||||||| ||||| |||||| ||||||||||||| | ||| || |||||||||||
Sbjct 420 GTTTGGTCCGGTCGGAGTTTTTGACCCTTCAGGCAATA--G-TGCATC-GAGTTTGTTCA 475
Query 539 TTTCAATCGCTCTCTCACTTGGTTTCTCCGTCGTCATTGCGTTTCTATAAAAGGCTAGTG 598
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 476 TTTCAATCGCTCTCACACTTGGTTTCTCCGTC---ATTGCGTTTCTATAAAAGGCTAGTG 532
Query 599 A 599
|
Sbjct 533 A 533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32061373197
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5