BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03520.1
Length=1322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484261 jgi|Araly1|484261|fgenesh2_kg.5__253__AT2G03520.1 1869 0.0
> Ahg484261 jgi|Araly1|484261|fgenesh2_kg.5__253__AT2G03520.1
Length=1343
Score = 1869 bits (1012), Expect = 0.0
Identities = 1241/1347 (92%), Gaps = 33/1347 (2%)
Strand=Plus/Plus
Query 4 ATGTATGTGGTTGAGAGCAAAGCAGGAGCTATAGGATGTATGATACTCTCATTGTGTTGT 63
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGTATGTGGTTGAGAGCAAAGCAGGAGCTATAGGATGTATGATACTTTCATTGTGTTGT 60
Query 64 TTGGGAAGTTGGCCAGCGATTCTGACTCTATTGGAGAGAAGAGGTCGTCTTCCTCAACAC 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGGGAAGTTGGCCAGCGATTCTGACTCTATTGGAGAGAAGAGGTCGTCTTCCTCAACAC 120
Query 124 ACGT-TTCTTGATTTCGCAACCGCGAATCTCTTGGCTGCAATCGTGATAGCATTTTCGCT 182
|| | ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 121 AC-TCTTCTTGATTTCGCAACCGCGAATCTCTTGGCTGCAATCGTGATCGCGTTTTCACT 179
Query 183 CGGTGAGATTGGGAAAAGCACGTTTCTAAAACCTGACTTTACCACTCAGCTACCTCAGGA 242
|||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 180 CGGTGAGATTGGAAAAAGCACGTTTGGAAAACCTGACTTTACCACTCAGCCCCCTCAGGA 239
Query 243 TAATTGGCCGTCGGTATTGCTTGCAGTCGCAGGCGGTGTGCTTCTTAGCATCGGGAATTT 302
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 TAATTGGCCGTCGGTATTGCTTGCAGTCGCAGGCGGTGTGCTTCTTAGCATAGGGAATTT 299
Query 303 AGCGACTCAATACGCTTTTGCGTTTGTCGGTTTATCGGTTACTGAAGTTATAACCGCAAG 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGCGACTCAATACGCTTTTGCGTTTGTCGGTTTATCGGTTACTGAAGTTATAACCGCAAG 359
Query 363 CATTACCGTCGTCATTGGTACAACATTGAATTATTTCTTGGACAACAAGATAAACAAAGC 422
||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||
Sbjct 360 CATTACCGTCGTCATTGGTACGACGTTGAATTATTTCTTGGACGACAAGATAAACAAAGC 419
Query 423 CGAGATCCTCTTCCCTGGCGTAGGTTGCTTCTTGATCGCTGTTTTCCTAGGCGCTGCGGT 482
|||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 420 TGAGATCCTCTTCCCCGGCGTAGGTTGCTTCTTGATCGCTGTTTTCCTCGGTGCTGCGGT 479
Query 483 TCATGCTTCTAATGCAGCTGATGTCAAAGAGAAACTCAAGTCTTTA-C---C-----T-- 531
||| ||||||||||||||||||||||||| |||||||||||||||| | | |
Sbjct 480 TCACGCTTCTAATGCAGCTGATGTCAAAGCGAAACTCAAGTCTTTACCTAGCGAGTATAA 539
Query 532 AGC---G----AAGATTTATATTCTTCTATTGAAAATGGTGAAGACAAGCCTGAAATAGA 584
||| | ||||||| |||||||| | | |||||| ||||||||| ||||||| |||
Sbjct 540 AGCTGAGACAAAAGATTTCTATTCTTCCACTAAAAATGTTGAAGACAACCCTGAAAAAGA 599
Query 585 GAAAACTGATGTCGAATCTCAAGAGAAACTCGCGGAAAAGGCGAAAGCAGGGACGGCAGG 644
||||| ||||||||||||||||||||||| |||| |||||| ||||||||||| |||||
Sbjct 600 GAAAAATGATGTCGAATCTCAAGAGAAACAAGCGGGAAAGGCTAAAGCAGGGACAGCAGG 659
Query 645 ATTCTATGTAGAGCTAGAGAACAAAAGAGCAATCAAGGTCTTTGGAAAAAGCATAATGAT 704
||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 660 ATTCTTTGTAGAGCTAGAGAACAAAAGGGCAATCAAGGTCTTTGGAAAGAGCATAATGAT 719
Query 705 CGGACTATTCATAACGCTGTTCGCGGGAATCAGCCTTTCTCTATTCTCTCCTGCATTCAA 764
|||||||||||||||||| || ||||||| | ||||||||||||||||||||||||||||
Sbjct 720 CGGACTATTCATAACGCTCTTTGCGGGAACCTGCCTTTCTCTATTCTCTCCTGCATTCAA 779
Query 765 CTTGGCAACAAACGATCAATGGAGTACATTGCCAAAAGGCGTACCTAAGCTCGTTGTCTA 824
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 780 CTTGGCAACAAATGATCAATGGAGTACATTGCCAAAAGGCGTACCTAAACTCGTTGTCTA 839
Query 825 TACCGCCTTTTTCTACTTCTCAATCGCGGGTTTTCTCATTTCTTTGATTCTAAACCTCAT 884
|||||| |||||||||||||| || ||||||||||||||| || ||||||||||| ||||
Sbjct 840 TACCGCTTTTTTCTACTTCTCCATTGCGGGTTTTCTCATTGCTCTGATTCTAAACATCAT 899
Query 885 CTTTCTTTACCGGCCAATGGTAGGCTTAGCGAGATCATCGCTTAAGAAGTATATATATGA 944
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 900 CTTTCTTTACCGGCCAATGGTAGCCTTAGCGAGATCATCGCTTAAGAAGTATATATATGA 959
Query 945 CTCCAAAGGTAGAGGTTGGGCGGTTTTCGCTGGATTCTTGTGCGGGTTTGGTAACGGTTT 1004
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 960 CTCTAAAGGTAGAGGTTGGGCGGTTTTCGCTGGATTCTTGTGTGGGTTTGGTAACGGTTT 1019
Query 1005 GCAGTTCATGGGAGGTCAAGCCGCTGGATACGCGGCTGCAGACTCTGTCCAGGCACTTCC 1064
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1020 ACAGTTCATGGGAGGTCAAGCCGCTGGATACGCGGCTGCGGACTCTGTCCAGGCACTTCC 1079
Query 1065 TCTTGTAAGCACATTTTGGGGTATAGTTTTG-TTCGGAGAGTATCGAAAATCGTCGAAGC 1123
|||||| |||||||||||||| ||||||||| || ||||||||||| | |||||| |||
Sbjct 1080 TCTTGTGAGCACATTTTGGGGCATAGTTTTGCTT-GGAGAGTATCGTAGATCGTCAAAGA 1138
Query 1124 GAACTTATGCCCTTTTAGTTAGCATGTTGGCCATGTTTGTGGCGGCCGTAGCTATTCTTA 1183
|||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1139 GAACTTATGCACTTTTAGTTAGCATGTTGGCCATGTTTGTGGCGGCCGTGGCGATTCTTA 1198
Query 1184 TGGCCTCTTCCGGTCACCGGAAATGATGATCTTATCATAGTTGTATT----AT--A---C 1234
|||| |||||||||||||||||||||||| ||| || |||||||||| || | |
Sbjct 1199 TGGCATCTTCCGGTCACCGGAAATGATGAGCTTTTCTTAGTTGTATTTCGCATGCATTAC 1258
Query 1235 ATGTAAGATTATAAGTGAATGAAGAATATATGTTCTGTTTCAAAAATGTTATGTTTTTTC 1294
|||| ||||| ||||||| ||||||| |||||||||||||||||| | | || ||||| |
Sbjct 1259 ATGTGAGATTCTAAGTGAGTGAAGAAGATATGTTCTGTTTCAAAAGTATAAT-TTTTT-C 1316
Query 1295 ATTCTAATTGGAGAAACATAATTTTTT 1321
||||||||||||||||||| |||||||
Sbjct 1317 ATTCTAATTGGAGAAACATTATTTTTT 1343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49445423349
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5