BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G03520.1 Length=1322 Score E Sequences producing significant alignments: (Bits) Value Ahg484261 jgi|Araly1|484261|fgenesh2_kg.5__253__AT2G03520.1 1869 0.0 > Ahg484261 jgi|Araly1|484261|fgenesh2_kg.5__253__AT2G03520.1 Length=1343 Score = 1869 bits (1012), Expect = 0.0 Identities = 1241/1347 (92%), Gaps = 33/1347 (2%) Strand=Plus/Plus Query 4 ATGTATGTGGTTGAGAGCAAAGCAGGAGCTATAGGATGTATGATACTCTCATTGTGTTGT 63 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 ATGTATGTGGTTGAGAGCAAAGCAGGAGCTATAGGATGTATGATACTTTCATTGTGTTGT 60 Query 64 TTGGGAAGTTGGCCAGCGATTCTGACTCTATTGGAGAGAAGAGGTCGTCTTCCTCAACAC 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTGGGAAGTTGGCCAGCGATTCTGACTCTATTGGAGAGAAGAGGTCGTCTTCCTCAACAC 120 Query 124 ACGT-TTCTTGATTTCGCAACCGCGAATCTCTTGGCTGCAATCGTGATAGCATTTTCGCT 182 || | ||||||||||||||||||||||||||||||||||||||||||| || ||||| || Sbjct 121 AC-TCTTCTTGATTTCGCAACCGCGAATCTCTTGGCTGCAATCGTGATCGCGTTTTCACT 179 Query 183 CGGTGAGATTGGGAAAAGCACGTTTCTAAAACCTGACTTTACCACTCAGCTACCTCAGGA 242 |||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 180 CGGTGAGATTGGAAAAAGCACGTTTGGAAAACCTGACTTTACCACTCAGCCCCCTCAGGA 239 Query 243 TAATTGGCCGTCGGTATTGCTTGCAGTCGCAGGCGGTGTGCTTCTTAGCATCGGGAATTT 302 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 240 TAATTGGCCGTCGGTATTGCTTGCAGTCGCAGGCGGTGTGCTTCTTAGCATAGGGAATTT 299 Query 303 AGCGACTCAATACGCTTTTGCGTTTGTCGGTTTATCGGTTACTGAAGTTATAACCGCAAG 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 AGCGACTCAATACGCTTTTGCGTTTGTCGGTTTATCGGTTACTGAAGTTATAACCGCAAG 359 Query 363 CATTACCGTCGTCATTGGTACAACATTGAATTATTTCTTGGACAACAAGATAAACAAAGC 422 ||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||| Sbjct 360 CATTACCGTCGTCATTGGTACGACGTTGAATTATTTCTTGGACGACAAGATAAACAAAGC 419 Query 423 CGAGATCCTCTTCCCTGGCGTAGGTTGCTTCTTGATCGCTGTTTTCCTAGGCGCTGCGGT 482 |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| Sbjct 420 TGAGATCCTCTTCCCCGGCGTAGGTTGCTTCTTGATCGCTGTTTTCCTCGGTGCTGCGGT 479 Query 483 TCATGCTTCTAATGCAGCTGATGTCAAAGAGAAACTCAAGTCTTTA-C---C-----T-- 531 ||| ||||||||||||||||||||||||| |||||||||||||||| | | | Sbjct 480 TCACGCTTCTAATGCAGCTGATGTCAAAGCGAAACTCAAGTCTTTACCTAGCGAGTATAA 539 Query 532 AGC---G----AAGATTTATATTCTTCTATTGAAAATGGTGAAGACAAGCCTGAAATAGA 584 ||| | ||||||| |||||||| | | |||||| ||||||||| ||||||| ||| Sbjct 540 AGCTGAGACAAAAGATTTCTATTCTTCCACTAAAAATGTTGAAGACAACCCTGAAAAAGA 599 Query 585 GAAAACTGATGTCGAATCTCAAGAGAAACTCGCGGAAAAGGCGAAAGCAGGGACGGCAGG 644 ||||| ||||||||||||||||||||||| |||| |||||| ||||||||||| ||||| Sbjct 600 GAAAAATGATGTCGAATCTCAAGAGAAACAAGCGGGAAAGGCTAAAGCAGGGACAGCAGG 659 Query 645 ATTCTATGTAGAGCTAGAGAACAAAAGAGCAATCAAGGTCTTTGGAAAAAGCATAATGAT 704 ||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 660 ATTCTTTGTAGAGCTAGAGAACAAAAGGGCAATCAAGGTCTTTGGAAAGAGCATAATGAT 719 Query 705 CGGACTATTCATAACGCTGTTCGCGGGAATCAGCCTTTCTCTATTCTCTCCTGCATTCAA 764 |||||||||||||||||| || ||||||| | |||||||||||||||||||||||||||| Sbjct 720 CGGACTATTCATAACGCTCTTTGCGGGAACCTGCCTTTCTCTATTCTCTCCTGCATTCAA 779 Query 765 CTTGGCAACAAACGATCAATGGAGTACATTGCCAAAAGGCGTACCTAAGCTCGTTGTCTA 824 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 780 CTTGGCAACAAATGATCAATGGAGTACATTGCCAAAAGGCGTACCTAAACTCGTTGTCTA 839 Query 825 TACCGCCTTTTTCTACTTCTCAATCGCGGGTTTTCTCATTTCTTTGATTCTAAACCTCAT 884 |||||| |||||||||||||| || ||||||||||||||| || ||||||||||| |||| Sbjct 840 TACCGCTTTTTTCTACTTCTCCATTGCGGGTTTTCTCATTGCTCTGATTCTAAACATCAT 899 Query 885 CTTTCTTTACCGGCCAATGGTAGGCTTAGCGAGATCATCGCTTAAGAAGTATATATATGA 944 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 900 CTTTCTTTACCGGCCAATGGTAGCCTTAGCGAGATCATCGCTTAAGAAGTATATATATGA 959 Query 945 CTCCAAAGGTAGAGGTTGGGCGGTTTTCGCTGGATTCTTGTGCGGGTTTGGTAACGGTTT 1004 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 960 CTCTAAAGGTAGAGGTTGGGCGGTTTTCGCTGGATTCTTGTGTGGGTTTGGTAACGGTTT 1019 Query 1005 GCAGTTCATGGGAGGTCAAGCCGCTGGATACGCGGCTGCAGACTCTGTCCAGGCACTTCC 1064 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1020 ACAGTTCATGGGAGGTCAAGCCGCTGGATACGCGGCTGCGGACTCTGTCCAGGCACTTCC 1079 Query 1065 TCTTGTAAGCACATTTTGGGGTATAGTTTTG-TTCGGAGAGTATCGAAAATCGTCGAAGC 1123 |||||| |||||||||||||| ||||||||| || ||||||||||| | |||||| ||| Sbjct 1080 TCTTGTGAGCACATTTTGGGGCATAGTTTTGCTT-GGAGAGTATCGTAGATCGTCAAAGA 1138 Query 1124 GAACTTATGCCCTTTTAGTTAGCATGTTGGCCATGTTTGTGGCGGCCGTAGCTATTCTTA 1183 |||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 1139 GAACTTATGCACTTTTAGTTAGCATGTTGGCCATGTTTGTGGCGGCCGTGGCGATTCTTA 1198 Query 1184 TGGCCTCTTCCGGTCACCGGAAATGATGATCTTATCATAGTTGTATT----AT--A---C 1234 |||| |||||||||||||||||||||||| ||| || |||||||||| || | | Sbjct 1199 TGGCATCTTCCGGTCACCGGAAATGATGAGCTTTTCTTAGTTGTATTTCGCATGCATTAC 1258 Query 1235 ATGTAAGATTATAAGTGAATGAAGAATATATGTTCTGTTTCAAAAATGTTATGTTTTTTC 1294 |||| ||||| ||||||| ||||||| |||||||||||||||||| | | || ||||| | Sbjct 1259 ATGTGAGATTCTAAGTGAGTGAAGAAGATATGTTCTGTTTCAAAAGTATAAT-TTTTT-C 1316 Query 1295 ATTCTAATTGGAGAAACATAATTTTTT 1321 ||||||||||||||||||| ||||||| Sbjct 1317 ATTCTAATTGGAGAAACATTATTTTTT 1343 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49445423349 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5