BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03530.1
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484262 jgi|Araly1|484262|fgenesh2_kg.5__254__AT2G03530.1 2041 0.0
> Ahg484262 jgi|Araly1|484262|fgenesh2_kg.5__254__AT2G03530.1
Length=1360
Score = 2041 bits (1105), Expect = 0.0
Identities = 1280/1362 (94%), Gaps = 21/1362 (2%)
Strand=Plus/Plus
Query 1 ACATTCTCTGGACA-AAAGATCTAAAAGATATGTGGTGGAAACTCTCTTGAACTTATTTG 59
|||||||||||| | |||||||||||| | |||||||||||||||||||||| |||||||
Sbjct 1 ACATTCTCTGGA-AGAAAGATCTAAAACACATGTGGTGGAAACTCTCTTGAAGTTATTTG 59
Query 60 CAGAAGTGATATTATCCTCTGTTCTTGCAGAACCTAGCAAAGGGCTGATCCATTTAGAGC 119
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 60 CAGAAGTGATAATATCCTCTGTTCTTGCAGAACCTAGCAAAGGGCTGATCCATTTTGATC 119
Query 120 CCGAGAATATGTATCTAGTGGAGAGCAAAGGAGGTGCCATAGCTTGTATGCTTTTAGCCT 179
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 120 CCGAAAATATGTATCTAGTCGAGAGCAAAGGAGGTGCCATAGCTTGTATGCTTTTAGCTT 179
Query 180 TACTATCTCTAGGGACTTGGCCAGCAGTTTTAACACTTTTAGAGAGACGTGGCCGTCTTC 239
|||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 180 TACTATCTCTAGGGACTTGGCCAGCAATTCTAACACTTTTAGAGAGACGTGGACGTCTTC 239
Query 240 CTCAACACACCTATCTTGATTACTCCATCACTAACTTGTTGGCTGCTATTATTATAGCTT 299
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTCAACACACTTATCTTGATTACTCCATCACTAACTTGTTGGCTGCTATTATTATAGCTT 299
Query 300 TCACTTTTGGTCAAATTGGGTCTACAAAACCCGATAGCCCAAACTTCATCACTCAGCTTG 359
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 300 TCACTTTTGGTCAAATCGGGTCTACAAAACCCGATAGCCCGAACTTCATCACTCAGCTTG 359
Query 360 CTCAAGATAATTGGCCGTCTGTTATGTTTGCAATGGCGGGCGGTATCGTGCTTAGCCTCG 419
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 360 CTCAAGATAATTGGCCATCTGTTATGTTTGCAATGGCGGGCGGGATCGTGCTTAGCCTCG 419
Query 420 GGAATCTATCAACTCAATATGCATGGGCTTTAGTAGGCTTATCAGTTACAGAAGTCATCA 479
|||||||| ||||||||||||| ||||||||||||||| ||||||| ||||||||| | |
Sbjct 420 GGAATCTAGCAACTCAATATGCTTGGGCTTTAGTAGGCCTATCAGTAACAGAAGTCGTTA 479
Query 480 CATCAAGCATCACTGTAGTCATAGGCTCAACCTTGAACTATTTCTTGGATGATAAGATCA 539
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 480 CATCAAGCATCACTGTAGTCATAGGCTCAACTTTGAACTATTTCTTGGATGATAAGATCA 539
Query 540 ACAAAGCCGAGATCCTTTTCCCCGGTGTGGCCTGTTTCTTGATCGCGGTTTGTCTTGGTT 599
| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 540 ATAAAGCCGAGATCCTTTTCCCCGGTGTGGCCTGTTTCTTGATCGCAGTTTTTCTTGGTT 599
Query 600 CAGCAGTTCATAGATCCAATGCAGACGATAACAAGGCCAAGCTAAGAGACTTTGAAACGG 659
|||||||||||||||||||||||| ||||||||||||||| ||| | |||||||||| ||
Sbjct 600 CAGCAGTTCATAGATCCAATGCAGGCGATAACAAGGCCAAACTACGCGACTTTGAAATGG 659
Query 660 CTAAGCAAGAAGCTTCAGGTCCATCTACCGAAATAGGAACAAACTCATCAAAAGACCTGG 719
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 660 CTAAGCAAGAACCTTCAGGTCCATCTACTGAAATAGGAACAAACTCATCAAAAGACCTGG 719
Query 720 AGACTAATGTTAC-GA-----CA---A--AA-CCTAAAGAAGGGACAGCAAGATTTCTTA 767
||||||||||||| || || | || || |||||||||||||||||||||||||
Sbjct 720 AGACTAATGTTACTGATGAAACATCGACGAAACCCAAAGAAGGGACAGCAAGATTTCTTA 779
Query 768 TAGAGCTTGAGAACACAAGAGCCATAAAGGTGTTCGGAAAACGAAAGATAATCGGACTAG 827
| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 780 TTGAGCTTGAGAACAAAAGAGCCATAAAGGTGTTCGGGAAACGAAAGATAATCGGACTAG 839
Query 828 CGATTACTTTCTTCGCAGGTCTTTGTTTCTCCCTCTTCTCTCCAGCATTTAACTTAGCCA 887
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 840 CGATTACTTTCTTCGCAGGTCTTTGTTTCTCCCTATTCTCTCCAGCATTTAACTTAGCCA 899
Query 888 CTAACGATCAATGGAACAGATTGAAACAAGGAGTGCCAAAGCTAGT-CGTTTACACAGCA 946
| |||||||| ||| ||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct 900 CAAACGATCAGTGGCACAGATTGAAACAAGGAGTTCCAAAGCTAGTTC-TTTACACAGCA 958
Query 947 TTCTTCTACTTCTCTGTTTCTTGTTTTATCATTGCATTGATACTCAACGTTGTATTCCTC 1006
||||||||||||||||||||||| ||||||||||||||||| |||||| ||| |||||||
Sbjct 959 TTCTTCTACTTCTCTGTTTCTTGCTTTATCATTGCATTGATCCTCAACATTGGATTCCTC 1018
Query 1007 TACTATCCTGTTCTTGGTCTTCCAAAATCTTCTTTTAAAGCTTACTTAAATGACTGGAAT 1066
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TACCACCCTGTTCTTGGTCTTCCAAAATCTTCTTTTAAAGCTTACTTAAATGACTGGAAT 1078
Query 1067 GGTCGTTACTGGGCCTTTTTGGCGGGGTTTCTTTGCGGTTTTGGAAACGGTCTTCAGTTT 1126
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1079 GGTCGTTACTGGGCCTTTTTGGCGGGTTTTCTTTGCGGTTTTGGAAACGGTCTTCAGTTT 1138
Query 1127 ATGGGCGGTCAAGCCGCAGGATACGCGGCTGCTGACTCCGTTCAGGCTCTTCCACTTGTG 1186
||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||
Sbjct 1139 ATGGGCGGTCAAGCCGCAGGATACGCGGCTGCTGATTCTGTTCAGGCGCTTCCTCTTGTG 1198
Query 1187 AGTACATTTTGGGGAGTGGTTTTGTTTGGAGAATACAGAAGATCGTCACGGAAAACTTAT 1246
||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 1199 AGTACATTTTGGGGAGTTGTTTTGTTTGGAGAATACAGAAGATCGTCGCGTAAAACTTAT 1258
Query 1247 CTACTTCTCTTCTGTATGTTGTTTATGTTCATTTCAGCTGTTGCAGTTCTCATGGCTTCT 1306
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1259 CTACTTCTCTTCAGTATGTTGTTTATGTTTATTTCAGCTGTTGCAGTTCTCATGGCTTCT 1318
Query 1307 TCTGGACATAGAAAGTAA--AAA---CTCAATAGATATAAAA 1343
|| ||||||||||||||| ||| |||||||| |||||||
Sbjct 1319 TCGGGACATAGAAAGTAATTAAAAAACTCAATAGTTATAAAA 1360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51199077531
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5