BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03550.1
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484264 jgi|Araly1|484264|fgenesh2_kg.5__256__AT2G03550.1 1358 0.0
> Ahg484264 jgi|Araly1|484264|fgenesh2_kg.5__256__AT2G03550.1
Length=990
Score = 1358 bits (735), Expect = 0.0
Identities = 921/1005 (92%), Gaps = 35/1005 (3%)
Strand=Plus/Plus
Query 24 ATCTCTAATCCAAGCAACAATATGGATTCCGTAA-TCGCTTTCGACAGATCTCCGATGTT 82
||||||| |||||||||||| |||||||| | || |||||||||| ||||||||| |||
Sbjct 1 ATCTCTAGTCCAAGCAACAAAATGGATTCAG-AAGTCGCTTTCGATAGATCTCCGGCGTT 59
Query 83 TCGAGTCTACAAGAGTGGCCGCATTGAGCGTCTCTTAGGAGAAACAACCGTCCCACCATC 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCGAGTCTACAAGAGTGGCCGCATTGAGCGTCTCTTAGGAGAAACAACCGTCCCACCATC 119
Query 143 TCTTACACCACAAAACGGTGTCGTCTCCAAAGATATCATCCATTCACCGGAGAAAAACCT 202
||| |||||||||||||| ||||||||||||||| ||||| |||||||||| ||||||||
Sbjct 120 TCTAACACCACAAAACGGCGTCGTCTCCAAAGATGTCATCTATTCACCGGATAAAAACCT 179
Query 203 CTCCCTCCGCATCTACCTACCGGAGAAAG--TC--AC-T----GTTAAAAAGCTCCCAAT 253
| ||||||||||||||| |||||||||| || || | | ||||||||||||||
Sbjct 180 TTTCCTCCGCATCTACCTCCCGGAGAAAGTCTCGGACATCACCGACAAAAAGCTCCCAAT 239
Query 254 CCTCATCTACTTCCACGGTGGTGGTTTCATCATAGAAACAGCTTTTTCTCCACCCTACCA 313
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 240 TCTCATCTACTTCCACGGTGGTGGTTTCATCATAGAAACAGCTTTTTCTCCAACTTACCA 299
Query 314 CACTTTCCTCACATCCGCCGTCGCGGCCGCTAACTGCTTAGCAATATCAGTAAACTATCG 373
||||||||||||||| |||||||| ||||||||||||||||| || |||||| | ||||
Sbjct 300 CACTTTCCTCACATCTGCCGTCGCCGCCGCTAACTGCTTAGCGATCTCAGTAGATTATCT 359
Query 374 CCGTGCACCGGAGTTTCCGGTACCTATTCCGTACGAAGATTCATGGGATTCACTCAAATG 433
||||||||||||||||||| | |||||||| |||||||||||||||||||| ||||||||
Sbjct 360 CCGTGCACCGGAGTTTCCGATTCCTATTCCATACGAAGATTCATGGGATTCTCTCAAATG 419
Query 434 GGTGTTAACTCATATCACAGGAACCGGACCGGAAACTTGGATAAACAAACACGGCGATTT 493
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGTTTTAACTCATATCACCGGAACCGGACCGGAAACTTGGATAAACAAACACGGCGATTT 479
Query 494 CGGAAAAGTGTTTCTCGCCGGAGATAGCGCCGGTGGAAACATATCTCATCATCTAACGAT 553
|||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||
Sbjct 480 CGGAAAAGTGTTTCTCGCCGGAGATAGCGCCGGTGGAAACATCGCACATCATCTTACGAT 539
Query 554 GCGAGCGAAAAAAGAGAAGCTTTGTGATTCTTTAATATCAGGGATAATCTTGATTCATCC 613
|||||||||| |||||| | |||| ||||||||||||||||||||||
Sbjct 540 TCGAGCGAAAAGAGAGAA--------A--CTTT-----CAGGGATAATCTTGATTCATCC 584
Query 614 ATATTTTTGGAGTAAGACTCCAATTGATGAGTTTGAGGTTAGAGACGTGGGGAAGACGAA 673
|||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 585 ATATTTTTGGGGGAAGACTCCAATTGATGAATTTGAGGTTAGAGACGTGGGGAAGACGAA 644
Query 674 AGGTGTTGAAGGAAGTTGGAGAGTCGCAAGTCCGAATAGTAAACAAGGAGTTGATGATCC 733
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 645 AGGTGTTGAAGGAAGTTGGAGAGTCGCAAGTCCGAATAGTAAAGAAGGAGTTGATGATCC 704
Query 734 ATGGCTCAACGTTGTCGGATCGGA-TC--C--ATC---C-GGATTAGGTTGCGGGCGGGT 784
||||||||||||||| ||||| || || | ||| | ||||||||||||||||||||
Sbjct 705 ATGGCTCAACGTTGTTGGATCCGAATCATCGGATCTATCCGGATTAGGTTGCGGGCGGGT 764
Query 785 TTTGGTAATGGTAGCTGGAGATGATCTGTTTGTGAGACAAGGTTGGTGTTACGCGGAGAA 844
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 765 TTTGGTAATGGTAGCTGGAGATGACCTGTTTGTGAGACAAGGTTGGTGTTACGCGGCGAA 824
Query 845 GCTGAAGAAGAGTGGATGGGAAGGTGAAGTTGAGGTAATGGAGACTAAAAATGAAGGTCA 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 GCTGAAGAAGAGTGGATGGGAAGGTGAAGTTGAGGTAATGGAGACTAAAAATGAAGGTCA 884
Query 905 TGTTTTTCATTTGAAGAATCCTAATAGTGATAATGCTCGTCAAGTCGTGAAGAAACTTGA 964
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 885 TGTTTTTCATTTGAAGAATCCTAATACTGATAATGCTCGTCAAGTCGTGAAGAAACTTGC 944
Query 965 AGAGTTTATTAATAAGTAATATTAATGAGTACGTTTGTCGAAGGA 1009
||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 945 AGAGTTTATTAATAAGTAATATTCATGAGTACGTTTGTCGAAGGA 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38999744091
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5