BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03590.1
Length=1802
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896332 jgi|Araly1|896332|Al_scaffold_0005_298 1812 0.0
Ahg936155 jgi|Araly1|936155|scaffold_500346.1 1083 0.0
> Ahg896332 jgi|Araly1|896332|Al_scaffold_0005_298
Length=1173
Score = 1812 bits (981), Expect = 0.0
Identities = 1110/1174 (95%), Gaps = 2/1174 (0%)
Strand=Plus/Plus
Query 373 ATGTATATGATAGAGAGCAAAGGAGGAGCAATTGCATGTATGCTCTTGGCTCTTCTCTTC 432
||||||||||| |||||||| ||||| |||||||| ||||||||||||||||| ||||||
Sbjct 1 ATGTATATGATTGAGAGCAAGGGAGGGGCAATTGCCTGTATGCTCTTGGCTCTGCTCTTC 60
Query 433 TTAGGGACATGGCCAGCAATCATGAC-TCTAACCGAAAGACGCGGTCGACTTCCTCAACA 491
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 61 TTAGGGACATGGCCAGCAATCATGACAT-TAACCGAAAGACGTGGTCGACTTCCTCAACA 119
Query 492 CACTTATCTTGACTACACACTCACAAATCTGTTAGCTGCAGTGATCATAGCGTTGACACT 551
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 CACTTATCTTGACTACACACTCACAAATCTGTTAGCTGCAGTGATCATTGCGTTGACACT 179
Query 552 AGGAGAAATAGGTCCGAGCAGACCAAATTTCTTTACACAGCTCTCTCAAGATAATTGGCA 611
||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 180 AGGCGAAATAGGTCCAAGCAGACCAAATTTCTTTACTCAGCTTTCTCAAGATAATTGGCA 239
Query 612 GTCAGTGATGTTTGCAATGGCTGGAGGAATAGTTCTTAGCCTTGGAAACTTAGCAACACA 671
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTCAGTTATGTTTGCAATGGCTGGAGGAATAGTTCTTAGCCTTGGAAACTTAGCAACACA 299
Query 672 ATATGCTTGGGCTTATGTTGGTTTATCAGTTACTGAAGTCATCACAGCTAGTATCACTGT 731
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 300 ATATGCTTGGGCTTATGTTGGTTTATCAGTTACTGAAGTCATCGCAGCTAGTATCACCGT 359
Query 732 TGTTATCGGCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCCT 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGTTATCGGCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCCT 419
Query 792 TTTCCCGGGGGTCGCTTGTTTCTTGATCGCTGTTTGTTTCGGTTCCGCTGTTCATAAATC 851
||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 420 TTTCCCGGGCGTCGCTTGTTTCTTGATCGCTGTTTGCTTCGGCTCTGCTGTTCATAAATC 479
Query 852 CAATGCTGCTGATAACAAAACCAAACTCCAAAATTTCAAAAGTTTAGAGACTACTTCTTC 911
||||| |||||||||||| ||||||||||| |||||||||||||||||||| | |||||
Sbjct 480 AAATGCAGCTGATAACAAATCCAAACTCCAAGATTTCAAAAGTTTAGAGACTGCGTCTTC 539
Query 912 CTTCGAAATGGAAACAATTTCTGCAAGCAACGGGTTAACAAAAGGGAAAGCGAAAGAAGG 971
||| |||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||
Sbjct 540 CTTTGAAATGGAAACAGTTTCTGCAAATAACGGGTTAGCGAAAGGGAAAGCGAAAGAAGG 599
Query 972 GACTGCAGCTTTTCTCATAGAGCTTGAGAAGCAAAGAGCTATAAAGGTCTTTGGCAAAAG 1031
|||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 600 GACTGCGGCGTTTCTCATAGAGCTTGAGAAACAAAGAGCTATAAAGGTCTTTGGGAAAAG 659
Query 1032 CACAATAATCGGATTGGTGATAACTTTCTTTGCCGGTATCTGCTTTTCTCTGTTCTCACC 1091
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 660 CACAATAATCGGATTGGCGATAACTTTCTTTGCCGGTATTTGCTTTTCTCTGTTCTCACC 719
Query 1092 TGCATTCAACTTAGCAACAAACGATCAATGGCACACATTAAAACATGGAGTTCCAAAACT 1151
|||||| |||||||| ||||| |||||||||||||| || |||||||||||||||||||
Sbjct 720 TGCATTTAACTTAGCGACAAATGATCAATGGCACACTTTGGAACATGGAGTTCCAAAACT 779
Query 1152 AAATGTGTACACTGCCTTCTTCTACTTCTCCATCTCTGCATTTGTAGTTGCTCTGATACT 1211
||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 780 CAATGTGTACACCGCCTTCTTCTACTTCTCAATCTCTGCGTTTGTGGTTGCTCTGATACT 839
Query 1212 TAACATCAGATTTCTCTATTGGCCTATACTTGGTCTCCCAAGATCTTCTTTCAAGGCTTA 1271
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 840 TAACATTAGATTTCTCTATTGGCCTATACTTGGTCTCCCAAGATCTTCTTTCAAGGATTA 899
Query 1272 TTTGAATGACTGGAACGGTCGAGGCTGGTCTTTCTTGGCTGGATTTCTATGTGGATTTGG 1331
| | |||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||
Sbjct 900 TCTAAATGACTGGAACGGTCGAGGATGGTCTTTCTTGGCTGGATTTTTATGTGGGTTTGG 959
Query 1332 CAATGGTCTTCAGTTCATGGGTGGTCAAGCCGCAGGCTATGCAGCTGCAGACGCTGTTCA 1391
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 960 GAATGGTCTTCAGTTCATGGGCGGCCAAGCCGCAGGCTACGCAGCTGCAGACGCTGTTCA 1019
Query 1392 GGCACTTCCACTTGTGAGTACATTTTGGGGGATATTGTTGTTTGGAGAATATAGAAGATC 1451
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1020 GGCACTTCCACTTGTGAGTACATTTTGGGGGATATTGTTGTTTGGAGAATACAGGAGATC 1079
Query 1452 ATCAAGAAAAACATATACACTTCTCATCAGTATGCTTCTTATGTTCATAGTCGCTGTCGC 1511
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1080 ATCAAGAAAAACATATACACTTCTCATTAGTATGCTTCTTATGTTCATAGTCGCTGTCGC 1139
Query 1512 GGTTCTTATGGCTTCCTCGGGACATAGAAAATGA 1545
|||||||||||| |||||||||||||||||||||
Sbjct 1140 GGTTCTTATGGCCTCCTCGGGACATAGAAAATGA 1173
> Ahg936155 jgi|Araly1|936155|scaffold_500346.1
Length=1156
Score = 1083 bits (586), Expect = 0.0
Identities = 782/876 (89%), Gaps = 16/876 (2%)
Strand=Plus/Plus
Query 650 GCCTTGGAAACTTAGCAACACAATATGCTTGGGCTTATGTTGGTTTATCAGTTACTGAAG 709
||||||| | |||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 258 GCCTTGGGACCTTAGCAACACAATATGCTTGGGCTTTTGTTGGTTTATCAGTCACTGAAG 317
Query 710 TCATCACAGCTAGTATCACTGTTGTTATCGGCACAACTTTGAACTATTTCTTGGATGATA 769
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 318 TCATCACAGCTAGTATCGCGGTTGTTATCGGCACAACTTTGAACTATTTCTTGGATGATA 377
Query 770 GAATCAACAGAGCTGAGGTCCTTTTCCCGGGGGTCGCTTGTTTCTTGATCGCTGTTTGT- 828
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 378 GAATTAATAGAGCTGAGGTCCTTTTTCCGGGGGTCGCTTGTTTCTTGATCGCTGTTT-TC 436
Query 829 TTCGGTTCCGCTGTTCATAAATCCAATGCTGCTGATAACAAAACCAAACTCCAAAATTTC 888
|||||||| |||||||||||||| ||||| |||||||||||| | ||||||||| |||||
Sbjct 437 TTCGGTTCAGCTGTTCATAAATCAAATGCAGCTGATAACAAATCTAAACTCCAAGATTTC 496
Query 889 AAAAGTTTAGAGACTACTTCTTCCTTCGAAATGGAAACAATTTCTGCAAGCAACGGGTTA 948
||||||||||||||| ||||||||||| ||||||| |||| || | | | | |
Sbjct 497 AAAAGTTTAGAGACTGCTTCTTCCTTCAAAATGGAGACAA-GTC--CTA-C-A------A 545
Query 949 ACAAAAGGGAAAGCGAAAGAAGGGACTGCAGCTTTTCTCATAGAGCTTGAGAAGCAAAGA 1008
|| |||| ||||| |||| ||||||||||| |||||| || ||||||||||| ||||||
Sbjct 546 AC-GAAGGAAAAGCAAAAGTAGGGACTGCAGATTTTCTTATTGAGCTTGAGAAACAAAGA 604
Query 1009 GCTATAAAGGTCTTTGGCAAAAGCACAATAATCGGATTGGTGATAACTTTCTTTGCCGGT 1068
|| |||||||| ||||| |||||||| ||||| ||| ||| |||||| ||||||||||||
Sbjct 605 GCCATAAAGGTTTTTGGGAAAAGCACGATAATTGGACTGGCGATAACATTCTTTGCCGGT 664
Query 1069 ATCTGCT-TTTCTCTGTTCTCACCTGCATTCAACTTAGCAACAAACGATCAATGGCACAC 1127
||||| | | ||||| ||||||||||| ||| |||||| ||||||||||||||||||||
Sbjct 665 ATCTG-TATCTCTCTAATCTCACCTGCAGTCAGCTTAGCGACAAACGATCAATGGCACAC 723
Query 1128 ATTAAAACATGGAGTTCCAAAACTAAATGTGTACACTGCCTTCTTCTACTTCTCCATCTC 1187
|| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 724 TTTGAAACATGGAGTTCCAAAACTGAATGTGTACACTGCCTTCTTCTACTTCTCAATCTC 783
Query 1188 TGCATTTGTAGTTGCTCTGATACTTAACATCAGATTTCTCTATTGGCCTATACTTGGTCT 1247
| |||||| ||||| | ||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 784 TTCATTTGGAGTTGGTATGATACTAAACATCATATTTCTCTATTGGCCTATACTTGGTCT 843
Query 1248 CCCAAGATCTTCTTTCAAGGCTTATTTGAATGACTGGAACGGTCGAGGCTGGTCTTTCTT 1307
|||||||| ||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 844 GCCAAGATCATCTTTCATGGCTTACCTAAATGACTGGAACGGTCGAGGCTGGTCTTTCTT 903
Query 1308 GGCTGGATTTCTATGTGGATTTGGCAATGGTCTTCAGTTCATGGGTGGTCAAGCCGCAGG 1367
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 904 AGCTGGATTTCTCTGTGGATTTGGCAATGGTCTTCAGTTCATGGGCGGTCAAGCCGCTGG 963
Query 1368 CTATGCAGCTGCAGACGCTGTTCAGGCACTTCCACTTGTGAGTACATTTTGGGGGATATT 1427
||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| |
Sbjct 964 TTATGCAGCTGCAGGCGCTGTTCAGGCACTTCTGCTTGTGAGCACATTTTGGGGGATACT 1023
Query 1428 GTTGTTTGGAGAATATAGAAGATCATCAAGAAAAACATATACACTTCTCATCAGTATGCT 1487
| | ||||||||||| | ||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1024 GCTATTTGGAGAATACAAAAGATCATCAAGAAAAACATATATACTTCTTATCAGTATGCT 1083
Query 1488 TCTTATGTTCATAGTCGCTGTCGCGGTTCTTATGGC 1523
| ||||||||||||| || ||||||||||| |||||
Sbjct 1084 TTTTATGTTCATAGTTGCAGTCGCGGTTCTGATGGC 1119
Score = 326 bits (176), Expect = 5e-88
Identities = 219/240 (91%), Gaps = 1/240 (0%)
Strand=Plus/Plus
Query 369 AAAGATGTATATGATAGAGAGCAAAGGAGGAGCAATTGCATGTATGCTCTTGGCTCTTCT 428
||| |||||| ||||||||||||||||||||||||| | ||||| ||||| ||||| ||
Sbjct 20 AAA-ATGTATGTGATAGAGAGCAAAGGAGGAGCAATCACTTGTATTCTCTTCGCTCTGCT 78
Query 429 CTTCTTAGGGACATGGCCAGCAATCATGACTCTAACCGAAAGACGCGGTCGACTTCCTCA 488
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 CTTCTTGGGGACATGCCCAGCAATCATGACTCTAACCGAAAGACGCGGTCGACTTCCTCA 138
Query 489 ACACACTTATCTTGACTACACACTCACAAATCTGTTAGCTGCAGTGATCATAGCGTTGAC 548
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||
Sbjct 139 ACACACTTATCTTGACTACACACTCACAAACCTGTTAGCTGCTGTAATCATAGCGTTTAC 198
Query 549 ACTAGGAGAAATAGGTCCGAGCAGACCAAATTTCTTTACACAGCTCTCTCAAGATAATTG 608
|||||| || ||| |||| ||||||||||||||| | |||||||| ||||||||||||||
Sbjct 199 ACTAGGCGAGATAAGTCCAAGCAGACCAAATTTCATCACACAGCTTTCTCAAGATAATTG 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67648275120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5