BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03620.1
Length=1595
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936157 jgi|Araly1|936157|scaffold_500348.1 2183 0.0
> Ahg936157 jgi|Araly1|936157|scaffold_500348.1
Length=1306
Score = 2183 bits (1182), Expect = 0.0
Identities = 1264/1305 (97%), Gaps = 0/1305 (0%)
Strand=Plus/Plus
Query 161 AAGAGAGGATTGAGCAAACATGGGAGAACAACTAGATCCATTTTCCGCTTCTAATCTTCC 220
||||||||| |||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 2 AAGAGAGGACAGAGCAAACATGGGAGAGCAACTGGATCCATTTTCGGCTTCTAATCTTCC 61
Query 221 GGATTTCATATCTTCTCAAAAAATTGGTAGACCGGTTAATTTCGAAGGACAAACTAACCG 280
|||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 62 GGATTTTATATCTTCGCAAAAAATTGGTAGACCGGTTAATTTCGAAGGACAAAATAACCG 121
Query 281 TGGGCATCCTTTTTCTGGTCTTAAGAAGAGAGGTCAATCTAGTCGTTCTTGGGTGAAAAT 340
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 TGGGCATCCGTTTTCTGGTCTTAAGAAGAGAGGTCAATCTAGTCGTTCTTGGGTGAAAAT 181
Query 341 TGATCAAGATGGGAACTCTGCGGTTTTGGAGCTCGACAAGGCGACTATAATGAAGCGTTG 400
|||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 182 TGATCAAGATGGGAACTCGGCCGTTTTGGAGCTCGATAAGGCGACTATAATGAAGCGTTG 241
Query 401 TTCCTTACCATCCAGGGATTTGAGACTCCTTGACCCTTTGTTTATCTATCCCTCGAGTAT 460
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 242 TTCTTTACCATCCAGGGATTTGAGACTACTTGATCCTTTGTTTATCTATCCCTCGAGTAT 301
Query 461 TTTGGGGCGTGAGAGAGCGATAGTTGTCAGTCTTGAGAAGATCAGGTGTATTATCACAGC 520
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 302 TTTGGGGCGTGAGAGAGCGATAGTTGTCAGTCTTGAGAAGATCAGGTGTATAATCACAGC 361
Query 521 TGAAGAGGTCATTCTCATGAATGCTCGAGATGCATCTGTTGTTCAGTACCAGTCGGAACT 580
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 CGAAGAGGTTATTCTCATGAATGCTCGAGATGCATCTGTTGTTCAGTACCAGTCGGAACT 421
Query 581 GTGTAAACGCCTTCAATCAAACCACAACCTAAATGTTAAAGATGATTTGCCATTTGAATT 640
|||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||
Sbjct 422 GTGTAAACGCCTTCAATCAAACCAAAACCTAAATATCAAAGATGATTTGCCGTTTGAATT 481
Query 641 TAAAGCGTTGGAGCTGGTTTTGGAACTATCTTGCTTGTCTTTAGATGCACAGGTGAATGA 700
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 482 TAAAGCGTTGGAGCTGGCTTTGGAATTATCTTGCTTGTCTTTAGATGCACAGGTGAATGA 541
Query 701 GCTTGAGATGGAGGTGTATCCCGTTCTTGATGAACTAGCCACAAACATCAGCACCCTTAA 760
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 542 GCTTGAGATGGAGGTGTATCCTGTTCTGGATGAACTAGCCACAAACATCAGCACCCTTAA 601
Query 761 TCTAGAACACGTGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAA 820
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 602 TCTAGAACACGTGCGCAGGCTAAAAGGCCGTCTTCTTACCTTAACACAGAAAGTTCAGAA 661
Query 821 GGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAGATGTATTT 880
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GGTTTGTGATGAAATAGAACATTTAATGGATGATGATGATGACATGGCTGAGATGTATTT 721
Query 881 GACTGAGAAAAAAGAAAGAGCTGAAGCTCATGCGTCAGAGGAGCTAGAAGATAACATTGG 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GACTGAGAAAAAAGAAAGAGCTGAAGCTCATGCGTCAGAGGAGCTAGAAGATAACATTGG 781
Query 941 TGAGGACTTTGAATCTTCTGGAATAGTTTCGAAGTCTGCGCCGGTTTCACCTGTGGGCTC 1000
||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 782 TGAGGACTTTGAATCTTCTGGTATAGTTTCGAAATCTGCACCGGTTTCACCTGTGGGCTC 841
Query 1001 AACAAGTGGAAACTTTGGGAAGCTTCAAAGAGCCTTTAGCAGCATTGTTGGCTCACATAA 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 AACAAGTGGAAACTTTGGGAAGCTTCAAAGAGCCTTTAGCAGCATTGTTGGCTCACATAA 901
Query 1061 AAGCTTGTTAAGCTCCTCTAGCATCGGAGAGAACATTGATCAACTAGAGATGTTACTAGA 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 AAGCTTGTTAAGCTCCTCTAGCATCGGAGAGAACATTGATCAACTAGAGATGTTACTAGA 961
Query 1121 AGCTTACTTTGTCGTTGTTGATAACACTCTGAGCAAATTATCATCGCTGAAAGAGTATAT 1180
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 962 AGCTTACTTCGTCGTTGTTGATAACACACTGAGCAAATTATCATCGCTGAAAGAGTATAT 1021
Query 1181 AGATGATACAGAGGATCTGATCAACATTAAGCTGGGGAATGTGCAGAATCAGTTGATTCA 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 AGATGATACAGAGGATCTGATCAACATTAAGCTGGGGAATGTGCAGAATCAGTTGATTCA 1081
Query 1241 GTTTCAACTGCTTCTCACCGCGGCAACCTTTGTGGCAGCTATTTTTGCCGCTGTAACCGC 1300
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1082 GTTCCAACTGCTTCTCACCGCGGCAACCTTTGTGGCAGCCATTTTTGCCGCTGTAACCGC 1141
Query 1301 TGTCTTCGGGATGAATTTGCAAGACTCTGTTTTCCAGAATCCGACGACTTTCCAGTATGT 1360
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1142 AGTCTTTGGGATGAATTTGCAAGACTCTGTTTTCCAGAATCCGACGACGTTCCAGTATGT 1201
Query 1361 TTTACTGATAACAGGTATTGGATGCGGTTTTTTGTATTTTGGTTTTGTGTTATACTTCAA 1420
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1202 TTTGCTGATAACAGGTATTGGATGCGGATTTTTGTATTTTGGTTTTGTGTTATACTTCAA 1261
Query 1421 GCACAAGAAAGTATTCCCTCTCTGAAAACTTATGTTAGAGAAGAA 1465
|||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1262 GCACAAAAAAGTATTCCCTCTCTGAAAACTTATGTTAGAGAAGAA 1306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59763594405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5