BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03630.1
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322661 jgi|Araly1|322661|fgenesh1_pm.C_scaffold_5000205 1057 0.0
> Ahg322661 jgi|Araly1|322661|fgenesh1_pm.C_scaffold_5000205
Length=774
Score = 1057 bits (572), Expect = 0.0
Identities = 703/765 (92%), Gaps = 14/765 (2%)
Strand=Plus/Plus
Query 1 ATGGAGTCTAAACATGAAGAACATGTGTTATCCAAACAAAAACATGATCAAGATGTAAAC 60
||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||
Sbjct 1 ATGGAGTCTAAACATGAAGAAGATGTGTTATCCAAACAAAAACATGATGAAGATGGAAA- 59
Query 61 AAAA-AAGGTTCATTAGACGACGAAAATGGAGATGTTGAGCATAAAACGATACCTTTACA 119
|||| ||||||||||||||| ||||||||||||||||||||||||| ||| | || | |
Sbjct 60 AAAACAAGGTTCATTAGACGGGGAAAATGGAGATGTTGAGCATAAAATGATGCATTCAGA 119
Query 120 AGAAACAGAAACTGTAATTATTAACTCAGAATCACATTCAAGATTAtcgtcgtcttcgtc 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 120 AGAAACAGAAACTGTAATTATTAACTCAGAATCACATTCTAGATTATCGTCGTCTTCTTC 179
Query 180 a---tcttcgtcttcttcttcttcgtATTTATCGCCACCGAAAGATCTACCTGAAGAGGT 236
| ||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 180 ATCTTCTTCGTCTTCTTCTTCTTCGTATTTATCACCGCCGAAAGATCTACCTGAAGATGT 239
Query 237 ACTAAAAGAATCATTGAATGATCCGGAGATTTCTTCACCACCTGTTCAAGTAATGGAT-- 294
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 --T-AAAGAATCATTGAATGATCCGGAGATTTCTTCACCACCTGTTCAAGTAATGGATAG 296
Query 295 AGA-GATAACAACGGAAAATATGACCCGAATAGGATTCCATCTTCGGTTTTCGAGAGAAG 353
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AGATGATAATAACGGAAAATATGACCCGAATAGGATTCCATCTTCGGTTTTCGAGAGAAG 356
Query 354 CAAATCGAATGTGCCAGCTGAATGGAGCTGCACTTCGAATGAATCTCTCTTCAGTATTCA 413
|||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 357 CAAATCGAATATACCAGCTGAATGGAGCTGCACTTCGAACGAATCTCTCTTCAGTATTCA 416
Query 414 TTTAGGAAACAATAGTTTCACTGGTTATGGTGGTGATTTGATGAAATCAGGTGAACTTTA 473
||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 417 TTTAGGACACAACAGTTTCACTGGTTACGGTGGTGATTTGATGAAATCAGGTGAACTCTA 476
Query 474 TAAATCCGGTGAGTTACTTGCGTATAGTCCTGGACTTCCTATGCCGCCTGTACCAGGATC 533
|||||| || |||||||| || || |||||||||||||||||||| ||| |||||||||
Sbjct 477 TAAATCGGGAGAGTTACTCGCATACAGTCCTGGACTTCCTATGCCTCCTCCACCAGGATC 536
Query 534 GGAACCAAAACCCGTAGTCGAAGAACCGAAAGTTGTTGAATCAGATAAGGAAGAGAAAGT 593
|||||||||||||| |||| |||||||||||||||| ||||||||| ||||| ||||
Sbjct 537 AGAACCAAAACCCGT---CGAAAAACCGAAAGTTGTTGATTCAGATAAGAAAGAGGAAGT 593
Query 594 TGTACTAGTagaagaaacacatacatcatcatcagatgaagaagaagggaaaagagaaag 653
|||||||||||||||||| || ||||| ||||| |||||||| |||| ||| ||||| ||
Sbjct 594 TGTACTAGTAGAAGAAACGCAGACATCTTCATCTGATGAAGAGGAAGAGAAGAGAGAGAG 653
Query 654 ccatgagaaagaaCAACATCCTGCTGTTTCTTGGAAAACTCCTACAACTTCTTACCGTTC 713
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 654 CCATGAGAAAGAACAACATCCCGCTGTTTCTTGGAAAACTCCTACAACTTCTTACCATTC 713
Query 714 TAACCGAAGCTCAAACAGCGCGCACTCCTTCTCTTTCCCAATGTA 758
||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 714 TAACCGAAGCTCAAACAGCACGCATTCCTTCTCTTTCCCAATGTA 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27982221078
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5