BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03640.3
Length=1727
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484274 jgi|Araly1|484274|fgenesh2_kg.5__266__AT2G03640.2 1583 0.0
> Ahg484274 jgi|Araly1|484274|fgenesh2_kg.5__266__AT2G03640.2
Length=1540
Score = 1583 bits (857), Expect = 0.0
Identities = 1044/1136 (92%), Gaps = 6/1136 (1%)
Strand=Plus/Plus
Query 86 TCTCTCCTTCACTCTAATTGCGATTGATTCTCCTGTCTTCTCCAATTTATCAGAGAAATT 145
||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1 TCTCTTCTTCACTCTAATTGCGATTGATTCTCTTGTCTTGTCCAATTTATCAGAGAAATT 60
Query 146 GCAGAGATGACACCTGAATCAAACGCTCCCTCAGTAGATCCACAATTTGTAGGCAATGGG 205
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 61 GCAGAGATGACACCTGAATCAAATGCTCCATCAGTGGATCCACAATTTGTAGGCAATGGG 120
Query 206 TTTGTTCAAGAATACTATAACCACCTTTATGATTCAACCTCGGAAGTACACAAATTCTAT 265
||||| || ||||||||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct 121 TTTGTCCAGGAATACTATAACCACCTTTATGAATCATCCTCTGAAGTACACAAATTCTAT 180
Query 266 CTCGAGGATAGTATGATTTCACGGCCTGGTCTCGATGGTGAGATAGTTACTATCAAATCC 325
|||||||| ||| ||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 181 CTCGAGGACAGTTTGATTTCACGGCCGGGTCTCGATGGTGAGATGGTTACTATCAAATCC 240
Query 326 TTGAAAGGGATTAATGATCAGATAATGTCCATTGACTACAAAAGCTC-AAGGAT-CGAGA 383
||||||| |||||||||||||||||||||| |||||||||||||||| || ||| | |||
Sbjct 241 TTGAAAGCGATTAATGATCAGATAATGTCCGTTGACTACAAAAGCTCGAA-GATAC-AGA 298
Query 384 TTCTAACTGCTGATTCTCAATCAACTTTAAAGAATGGTGTTGTAACTCTAGTCACGGGTT 443
|| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTTTGACTGCTGATTCTCAACCAACTTTAAAGAATGGTGTTGTAACTCTAGTCACGGGTT 358
Query 444 TAGTGATCGGGAACGATGGAGGAAGGAGGAAATTTTCTCAGAGTTTCTTTCTTGTGTCGC 503
||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||| |||
Sbjct 359 TAGTGATCGGGAAAGATGGAGGAAGAAGGAAATTTTCTCAAAGTTTCTTCCTTGTGCCGC 418
Query 504 GGAATGGAAGCTACTTTGTGCTGAATGATACCTTTAGGTATGTGTCTGATGAGTTTGTTG 563
||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| |||
Sbjct 419 GGAATGGAAGCTACTTTGTACTGAACGATACCTTTAGGTACGTGTCTGATGAGTTTTTTG 478
Query 564 AACCAGAAGCTACCAAGGAGGTTGAGGAGAGTCAGTCAACAAATGCTATCACTGCAGAGC 623
|||||||||||||||||||||| |||||||||||||||||||| |||||||| | |||||
Sbjct 479 AACCAGAAGCTACCAAGGAGGTCGAGGAGAGTCAGTCAACAAAAGCTATCACCGTAGAGC 538
Query 624 CTGCAAATGAAAGTGTAGAGGCGGTTATTGTCCCTACTGAAGCTAAAACTACGGTGACGA 683
|||||||||||| ||||||||| ||||||||||||||| ||||||||||||| ||||| |
Sbjct 539 CTGCAAATGAAATTGTAGAGGCAGTTATTGTCCCTACTCAAGCTAAAACTACAGTGACAA 598
Query 684 AGCCAGCAAGTGCCATACCAAACGGACATGCGAAAGTCCCTGAGGAGAAAGTTGTGAATG 743
|||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGCCCGCAAGTGTCATAGCAAACGGACATGCGAAAGTCCCTGAGGAGAAAGTTGTGAATG 658
Query 744 AAAACAGTAGCTTACCTAAAGCTGCTGAAGCAAAACTTCAAGAGGAGGTTCCCAAGAAAT 803
|||||| | | | |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 659 GAAACAGCAACATGCCTAAAGCTGCTGAAGCAAAACTTCAAGAGGAGGCTCCCAAGAAAT 718
Query 804 CGTTTGCATTAATTGTTCAATCTCTGGCTCAAAGCGCTGGTACTTTACAGGTTAAAGCCT 863
| |||||||||||||| |||||||||||| ||| |||||||||||| |||| |||||| |
Sbjct 719 CCTTTGCATTAATTGTCCAATCTCTGGCTGAAAACGCTGGTACTTTCCAGGATAAAGCTT 778
Query 864 CGCCGGTCAAGCGTAAACCTGTCGAAAAACCGGTTGCTGCTCCGGAGCGCAAAGCTCCTT 923
| || | ||||| ||||| ||| |||| | || ||| |||||| ||| ||||||||||
Sbjct 779 CACCAGCCAAGCCTAAACGTGTAGAAAGATCGATTGTTGCTCCTAAGCCCAAAGCTCCTG 838
Query 924 CCCCAATTCGTAAACAGGCTTCTGCTGAAAGCATTAAACCACAAGCTCAGGGTAGTTCCA 983
| |||||| |||||| ||||||| ||||| | |||||| ||||||||| ||||||||||
Sbjct 839 CTTCAATTCCTAAACAAGCTTCTGGTGAAACCGTTAAACAACAAGCTCAAGGTAGTTCCA 898
Query 984 TATTTGTTGCAAACTTGCCTATGGATGCGACTATTGAGCAACTTTATGAAACATTTAAAA 1043
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 899 TATTTGTTGCAAACTTGCCTATGGATGCGACTATTGAACAACTCTATGAAACATTCAAAG 958
Query 1044 GTTTTGGAGCTATTA-GAAAGGATGGTATCCAAGTCAGAAGTTACCCGGaaaaaaaGAAC 1102
|||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 959 GTTTTGGATCTATTAGGAAA-GATGGTATCCAAGTCAGAAGTTACCCGGAAAAAAAGAAC 1017
Query 1103 TGTATTGGGTTTGTGGCATTCGAAAATGGTGAAGCAGTAAAAAATGTCTTTCAGGCTCAC 1162
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1018 TGTATTGGGTTTGTGGCATTCGAAAATGGTGAATCAATAAAAAATGTCTTTCAGGCTCAC 1077
Query 1163 AGGGAATCACCAATCAGAATCGGAAACCGAAGAGCATCTATAGAAGAAAAGCGAGG 1218
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AAGGAAACACCAATCAGAATCGGAAACCGAAGAGCATCTATAGAAGAAAAGCGAGG 1133
Score = 442 bits (239), Expect = 4e-123
Identities = 310/344 (90%), Gaps = 6/344 (2%)
Strand=Plus/Plus
Query 1388 GATGGATACAAACCTAGGGGCAGTGGCGTCAATGGAGGACGAGGCTATGGGAGACGGAAC 1447
||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1192 GATGGATACAAACCTCGGGGAAGTGGTGTCAATGGAGGACGAGGCTATGGGAGACGGAAC 1251
Query 1448 AGTGAGTCTAATGGGGATGGTAAAGCATACCAGAACAATGGCCATGGCAATACTGAGGCC 1507
| ||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1252 AATGAGTCTGATGGGGATGGTAAAGTATACCAGAACAATGGTCATGGCAATACTGAGGCC 1311
Query 1508 AAAAACTAGATTAGTTTTTTCTTCTTCTAAGCTTTGCTCAT-GGTTGAGAATCTGAGGTT 1566
||||||||||||||||||| ||||||| || ||||| | || ||||||||||||||||||
Sbjct 1312 AAAAACTAGATTAGTTTTTGCTTCTTCCAAACTTTGTTTATTGGTTGAGAATCTGAGGTT 1371
Query 1567 GTAGGCGATGTTAAAACAAATTTTTGTTTCCGTGGATATCTTAGGTGTTGATCTTTTCGA 1626
||||||||||||||||| ||||| |||| || |||||| ||||| ||||||||||| ||
Sbjct 1372 TTAGGCGATGTTAAAACAGATTTTAGTTTGCGAGGATATTTTAGGCGTTGATCTTTTTGA 1431
Query 1627 TTTGTGATATTGTTTGGGGATAAATCTAGAACATTTTTCTTCACTCTTTGATCTCTGTAT 1686
||| ||||||||||| |||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 1432 TTTTTGATATTGTTTTGGGATAAATCTAGAACATTTTTCTTCCCTCTTTGAT-T-TGTAT 1489
Query 1687 CTTCTCATGAACAAAGCAGA-GA-A-CAAAATCGAATTGATTTA 1727
|||||||||| ||||| ||| || | |||||| || |||| |||
Sbjct 1490 CTTCTCATGAGCAAAGGAGAAGAGAACAAAATTGAGTTGAATTA 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64791506745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5