BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03667.1
Length=2043
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484275 jgi|Araly1|484275|fgenesh2_kg.5__267__AT2G03667.1 3127 0.0
> Ahg484275 jgi|Araly1|484275|fgenesh2_kg.5__267__AT2G03667.1
Length=2051
Score = 3127 bits (1693), Expect = 0.0
Identities = 1939/2056 (94%), Gaps = 24/2056 (1%)
Strand=Plus/Plus
Query 7 ACAACTTTGACGGAAACGGAGACCAGAAACAGACGCCGGC----GGAGATATGTGCGGAA 62
||||||||||||||| |||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 1 ACAACTTTGACGGAACCGGAGACCAGAAGCAGACGCCGGCAGAGGGAGATATGTGTGGAA 60
Query 63 TTGCAATTGTAGTGTGCGGCGTTCGTATCGAACTCTCGACACTTTCGTCGTCTCTCTCTG 122
|||| |||| ||||||||||||||||||||||||||||| ||||| |||| ||||||||
Sbjct 61 TTGCGGTTGTTGTGTGCGGCGTTCGTATCGAACTCTCGACGCTTTCTTCGTTTCTCTCTG 120
Query 123 AAACTGAGACTCCTTTCGAACGATTACAAGTCTCTGTTGAAGATGTTAAAGCTGTCTTAA 182
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 AAACTGTGACTCCTTTCGAACGATTACAAGTCTCTGTTGAAGATGTTAAATCTGTCTTAG 180
Query 183 GCCAAAGAGGTCCTGATAGTGTAGGAGAAAAGACTATTCATCTT---C-----G-ACCAA 233
|||||||||||||||||||||||||||||||||||||||||||| | | | |||
Sbjct 181 GCCAAAGAGGTCCTGATAGTGTAGGAGAAAAGACTATTCATCTTCAACAAAATGTATCAA 240
Query 234 ATTGTGGTCAAGAATCTGCT-ACTCTCTCTGTTGT-TGAGACTAGTGAAGGAACTTATAA 291
|||||||||||| |||| | |||||||||||| | |||| ||||||||||||||||| |
Sbjct 241 CTTGTGGTCAAGATTCTG-TGACTCTCTCTGTT-TCTGAGGCTAGTGAAGGAACTTATGA 298
Query 292 GCTTGAGGAGACTACTTCTTTGGGTGAATTGCATTTTATTGGTTCTACATTACAGCTTAG 351
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 299 GCTTGAGGAGACTACTTCTTTGGGTGAATTGCATTTTTTTGGTTCTACATTACAGCTTAG 358
Query 352 AGGAACTAGTCCTATAAGGCAACCATTGGTGGATTCTTCTGGGAACATTCTAGCTTACAA 411
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGGAACTAGTCCTATAAGGCAGCCATTGGTGGATTCTTCTGGGAACATTCTAGCTTACAA 418
Query 412 TGGCGAAGTATTTGGTGGAATTGAACTCAACAGCTATGATAATGATACTGAAGTGCTTTT 471
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 419 TGGCGAAGTATTTGGTGGAATTGAACTCAACTGCTATGATAATGATACTGAAGTGCTTTT 478
Query 472 GAAGTCTTTAGAGAAAGCAAAATCTTTAGTTCCAGATGTTCTTTCGATGATTAAAGGTCC 531
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 479 GAAGTCTTTAGAGAAAGCAAAAGCTTTAGTTCCAGATGTTCTTTCGATGATTAAAGGCCC 538
Query 532 CTGGGCCATTATATATTGGCAGGAAAGCTCGAGAACGTTATGGTTTGGTAAAGATCCGTT 591
|||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| | ||
Sbjct 539 CTGGGCCATTATATATTGGCAGGAAACCTCAAGAACGCTATGGTTTGGTAAAGATGCTTT 598
Query 592 TGGTCGGAGGAGCCTTCTTGTTCACTCGCCAACTGTGGAAGACCCTCGTTTTCTTCTATC 651
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 599 TGGTCGGAGGAGCCTCCTTGTTCACTGGCCAACTGTGGAAGACCCTCGTTTTCTTCTATC 658
Query 652 GTCTGTTTCACCAGCTTCTTCAGTTTCTCAAGGATTGGATACTGAAAATGGTAATAGCCT 711
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 659 GTCTGTTTCACCAGCTTCTTCAGTTGCTCAAGGATTGGATGCTGAAAATGGTAATAGCAT 718
Query 712 TCATAGATATTGGGAAGAGCTTCCATGTGGCGTGTACAGTATTTCTTTTGGGGTTTCAGA 771
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 719 TCATAGATTTTGGGAAGAGCTTCCATGTGGCGTGTACAGCATTTCTTTTGGGGTTTCTGA 778
Query 772 ATTATGTATTCATGGTGAAGTTACAAAACACGAATGGAGAAATACCATCTGGAAAGAATT 831
||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 779 ATTATGTATTCGTGGTGAAGTCACAAAACACGAGTGGAGAAATACCATCTGGAAAGAATT 838
Query 832 GATTGAATGGGAAAGGAAATTAGTTGTACCTAGACCTGAAGATCTATCAACGTCATCGCT 891
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GATTGAATGGAAAAGGGAATTAGTTGTACCTAGACCTGAAGATCTATCAACGTCATCGCA 898
Query 892 TAGTGGAGTTCAGGAAGACAAATCTGTGTCAACTTCTCTAGGATTTGCGCAGACAGTTTT 951
||||||| ||||||||||||||||||| || |||||| ||||||| ||||||||||||||
Sbjct 899 TAGTGGATTTCAGGAAGACAAATCTGTTTCGACTTCTTTAGGATTAGCGCAGACAGTTTT 958
Query 952 GGTCGTGTTAAAGGAATCAGTGAGGCGGCGAACTTCACTTCATAGCATTTATCAGGGAGA 1011
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 959 GGTCGTGTTAAAGGAATCAGTGAGGCGACGAACTTCACTTCATAGCATTTATCAGGGAGA 1018
Query 1012 TAAAGAAGCTGTCCCAGTAGCTGTTCTTTTCTCTGGTGGATTGGATTCGATGATTCTTGC 1071
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AAAAGAAGCTGTCCCAGTAGCTGTTCTTTTCTCTGGTGGATTGGATTCGATGATTCTTGC 1078
Query 1072 TGCGCTGTTGCATCAGTGCCTTGATCCAAAATATGAAGTTGATCTCCTTAATGTCAGTTT 1131
|||||||||| |||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 1079 TGCGCTGTTGGATCAGTGCCTGGATCCAAAATATGAGGTGGATCTCCTTAATGTCAGTTT 1138
Query 1132 TGATGGTCCTAATGCTCCTGATAGGATCTCCGCCAAGGCTGGAATAAAGGAACTCAAAAA 1191
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TGACGGTCCTAATGCTCCTGATAGGATCTCCGCCAAGGCTGGAATAAAGGAACTCAAAAA 1198
Query 1192 GATTGCACCTTTTAGAAGGTGGAAACTTGTTGAGATTGATGCTGATCTGTCAAAACTAGG 1251
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GATTGCGCCTTTGAGAAGGTGGAAACTTGTTGAGATTGATGCTGATCTGTCAAAACTAAC 1258
Query 1252 CTTTGAGACAAAACGTGTTATGTCACTCATAAATCCTGCAGACACTTACATGGACCTTAA 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1259 CTTTGAGACAAAACGTGTTATGTCACTCATAAATCCTGCAGACACTTACATGGACCTAAA 1318
Query 1312 CATAGGAACAGCATTATGGTTAGCTGCTCGTGGTGATGGTTGGATTCACGAAGATAATGG 1371
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1319 CATAGGAACAGCACTATGGTTAGCTGCTCGCGGTGATGGTTGGATTCACGAAGATAATGA 1378
Query 1372 AAATCCAAGTGTAGAGGAAAATAACCAGCGGGTCAAGTATAAGTCCGATGCTAGAATCCT 1431
||||||| ||||||| ||| |||| || |||||||| |||||||| ||||||||||||||
Sbjct 1379 AAATCCATGTGTAGAAGAAGATAAACAACGGGTCAAATATAAGTCTGATGCTAGAATCCT 1438
Query 1432 GCTTGTTGGCGCTGGTGCTGATGAGCAATGTGCCGGTTACGGTAGGCACAGAACTAAATA 1491
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 1439 GCTTGTTGGCGCTGGTGCTGATGAGCAATGTGCTGGTTATGGTAGGCACAGAACAAAATA 1498
Query 1492 TCGAAATGGAAGTTGGGTTGCGTTGGATCAAGAAATGAAATTAGATATGCAGAGAATTTG 1551
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1499 TCGAAACGGAAGTTGGGTTGCGTTAGATCAAGAAATGAAATTAGATATGCAGAGAATTTG 1558
Query 1552 GAAAAGAAATTTGGGTCGAGATGATCGATGCATTGCAGATAACGGTAAAGAGGGGCGATT 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GAAAAGAAATTTGGGTCGAGATGATCGATGCATTGCAGATAACGGTAAAGAGGGGCGATT 1618
Query 1612 CCCGTTCTTAGATGAAGATGTGATAAAGACTCTCCTTGACATTCCCTTGTGGGAAATCGC 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1619 CCCGTTCTTAGATGAAGATGTGATAAAGACTCTCCTTGACATTCCCTTGTGGGAAATTGC 1678
Query 1672 TGATCTTGAGCAACCAAGTGGAACGGGAGACAAGAAGATTCTTAGACAGGTTGCAA-GCC 1730
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1679 GGATCTTAAGCAACCAAGTGGAAAGGGAGACAAGAAGATTCTTAGACAGGTTGCAAAGT- 1737
Query 1731 TGCTTGGTGTACATGAAGTTGCAAAGATGCCTAAGAGAGCAATTCAGTTTGGATCAAGAA 1790
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1738 TGCTTGGTTTACATGAAGTTGCAAAGATGCCTAAGAGAGCAATTCAGTTTGGATCGAGAA 1797
Query 1791 TCGCTCGTGAATCAAACCGGAAGAATTTTGGAAGTAACCGTGCCGCAAACCAGGCTTCTG 1850
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 TCGCTCGTGAATCGAACCGGAAGAATTTTGGAAGTAACCGTGCCGCAAACCAGGCTTCTG 1857
Query 1851 CCGGGAGCGTGAGATTCCTAGCACCGTCACACTAATTCCCTC-TGATTCATGTTAGATCA 1909
|||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 1858 CCGGGAGCGTGAGATTCCAAGCACCGTCACACTAATTCCCTCCT-ATTCATGTTAGATCA 1916
Query 1910 A-TCATTGTTATACATTGTATCCTATACAAAGAGACATTCTTTCAATGATCTCAAAACTG 1968
| | ||||||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1917 AATT-TTGTTATCCATTGTATCCTATACAAAGAAACATTCTTTCAATGTTCTCAAAACTG 1975
Query 1969 GTTTGAACACTGAACACAAATGG-ACTAATAAGAGGACATGTTAAGACTTAAACCACTTG 2027
||||||||| |||||| ||| || ||||||||||||| |||||||||||| |||||||||
Sbjct 1976 GTTTGAACATTGAACAAAAAAGGGACTAATAAGAGGAAATGTTAAGACTTGAACCACTTG 2035
Query 2028 GTTCGGTATTTTGCTC 2043
||| |||||||||||
Sbjct 2036 ATTCTGTATTTTGCTC 2051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76828024165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5