BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03670.1
Length=1975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322664 jgi|Araly1|322664|fgenesh1_pm.C_scaffold_5000208 2970 0.0
> Ahg322664 jgi|Araly1|322664|fgenesh1_pm.C_scaffold_5000208
Length=1806
Score = 2970 bits (1608), Expect = 0.0
Identities = 1744/1810 (96%), Gaps = 7/1810 (0%)
Strand=Plus/Plus
Query 93 TGGAAACCGAAAGCAGTGTCTGCGACAACATCGCCGGCAATGAGAAATGGCGAGCGGAAG 152
||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 2 TGGAAACCGAAAGCAGTGTCTGCGACAACATCGTCAGCGATGAGAAATGGCGAGCGGAAG 61
Query 153 CTGAAATTGGTGGCAACGAGAGAGCTCTGCAAGCGCTTCGAGAACTCATTATCTTCCCTT 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CTGAAATTGGTGGCAACGAGAGAGCTCTGCAAGCGCTTCGAGAACTCATTATCTTCCCTT 121
Query 213 TTCGTTACCCTCTCGAAGCTCGAACTCTTGGTCTCAAATGGCCTAGAGGATTGCTTCTCT 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 TTCGTTACCCTCTCGAAGCTCGAACTCTTGGTCTCAAATGGCCTAGAGGATTGCTTCTCT 181
Query 273 ACGGTCCTCCTGGAACCGGCAAGACAAGCTTGGTCCGTGCTGTTGTCCAGGAATGTGATG 332
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 ATGGTCCTCCTGGAACCGGCAAGACAAGCTTGGTCCGTGCTGTTGTCCAGGAATGTGATG 241
Query 333 CACATTTGATTGTTTTAAGCCCTCATTCTGTACATCGAGCACATGCTGGAGAAAGCGAGA 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CACATTTGATTGTTTTAAGCCCTCATTCTGTACATCGAGCACATGCTGGAGAAAGCGAGA 301
Query 393 AAGTCTTAAGGGAAGCTTTCGCTGAGGCTTCTTCTCACGCTGTTTCAGACAAGCCTTCTG 452
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 302 AAGTCTTAAGGGAAGCTTTTACTGAGGCTTCTTCTCACGCTGTTTCAGACAAGCCATCTG 361
Query 453 TGATTTTTATTGATGAAATCGATGTTCTTTGTCCTCGTCGTGATGCTAGACGAGAACAAG 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 362 TGATTTTTATTGATGAAATCGATGTTCTTTGTCCTCGTCGTGATGCTAGACGAGAGCAAG 421
Query 513 ATGTTCGTATTGCTTCTCAACTGTTTACACTTATGGACTCAAACAAGCCTTCATCATCTG 572
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 422 ATGTTCGTATTGCTTCTCAACTATTTACACTCATGGACTCAAACAAGCCTTCATCATCTG 481
Query 573 CACC-AAGAGTTGTTGTTGTAGCATCCACAAATAGGGTGGATGCGATTGACCCAGCGCTA 631
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 482 CACCGAA-AGTTGTTGTTGTAGCATCCACAAATAGGGTGGATGCGATTGACCCAGCGATA 540
Query 632 AGAAGAGCGGGACGATTTGATGCTTTAGTTGAAGTGAGCACACCAAATGAGGAGGATCGT 691
||||| || |||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 541 AGAAGGGCAGGACGATTTGATGCTTTAGTTGAAGTGAGCACGCCAAATGAGGATGATCGT 600
Query 692 TTAAAAATCCTGCAGCTGTACACAAAGAAAGTCAATTTAGATCCTAGTGTCGATCTTCAA 751
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 601 TTAAAAATCCTGCAGCTGTACACAAAGAAAGTCAATTTAGATTCTAGTGTCGATCTTCAA 660
Query 752 GCCATTGCAATATCTTGCAACGGTTATGTTGGAGCAGATTTGGAAGCTTTATGTCGTGAA 811
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 661 GCCATAGCAATATCTTGCAACGGTTATGTTGGGGCAGATTTGGAAGCTTTATGTCGCGAA 720
Query 812 GCGACAATATCTGCAAGTAAAAGATCTTCAGATTCTCTTATTCTAACATCTCAAGACTTC 871
|| || |||||||||||||||||||| |||||| ||||||| |||| ||| |||||||||
Sbjct 721 GCAACCATATCTGCAAGTAAAAGATCCTCAGATCCTCTTATCCTAATATCGCAAGACTTC 780
Query 872 AAGATTGCAAAATCTGTGGTTGGTCCAAGTATAAACAGAGGCATCACAGTTGAAATCCCT 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAGATTGCAAAATCTGTGGTTGGTCCAAGTATAAACAGAGGCATCACAGTTGAAATCCCT 840
Query 932 AAAGTGACATGGGACGATGTTGGTGGTCTTAAAGACTTAAAGAAAAAGCTCCAGCAAGCT 991
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AAAGTGACATGGGACGACGTTGGTGGTCTTAAAGACTTAAAGAAAAAGCTCCAGCAAGCT 900
Query 992 GTTGAATGGCCAATCAAACATTCAGCTGCATTTGTAAAAATGGGCATATCGCCAATGCGT 1051
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 901 GTAGAATGGCCAATCAAACATTCAGCTGCATTTGTAAAAATGGGCATATCGCCGATGCGT 960
Query 1052 GGGATACTTCTACATGGTCCTCCAGGTTGCTCAAAGACAACTCTTGCTAAAGCCGCTGCA 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 961 GGGATACTTCTACATGGTCCTCCAGGTTGCTCAAAGACAACTCTTGCTAAAGCTGCTGCA 1020
Query 1112 AATGCTGCTCAAGCCTCCTTCTTTTCCTTAAGCTGTGCGGAGCTATTTTCTATGTATGTT 1171
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1021 AATGCTGCTCAAGCCTCTTTCTTTTCCTTAAGCTGTGCAGAGCTATTTTCTATGTATGTT 1080
Query 1172 GGAGAAGGTGAAGCATTATTGCGGAATACATTTCAAAGAGCTCGACTTGCTTCTCCAAGT 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GGAGAAGGTGAAGCATTATTGCGGAATACATTTCAAAGAGCTCGACTTGCTTCTCCAAGT 1140
Query 1232 ATAATATTCTTTGATGAAGCTGATGTCGTTGCCTGTAAAAGAGGTGATGAGAGCTCAAGC 1291
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1141 ATAATATTCTTTGATGAAGCTGATGTTGTTGCCTGTAAAAGAGGTGATGAGAGCTCAAGC 1200
Query 1292 AATAGTTCTACAGTTGGAGAAAGGCTTCTATCTACACTGTTAACCGAAATGGACGGTCTT 1351
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1201 AATAGTTCTACAGTTGGAGAAAGGCTTTTATCTACACTGTTAACCGAAATGGACGGTCTT 1260
Query 1352 GAAGAAGCAAAGGGAATCCTCGTCTTGGCTGCCACAAACCGCCCGTATGCAATTGATGCT 1411
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1261 GAAGAAGCAAAGGGAATCCTCGTCTTGGCTGCCACAAACCGCCCATATGCAATTGATGCT 1320
Query 1412 GCTCTAATGCGACCTGGTCGATTTGATCTCGTGCTATACGTGCCACCGCCTGATCTAGAA 1471
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1321 GCTCTTATGCGACCTGGTCGATTTGATCTTGTGCTATACGTGCCACCGCCTGATCTAGAA 1380
Query 1472 GCCCGGTTTGAAATACTGCAAGTGCATACACGCAACATGACACTAGGAGACGACGTTGAT 1531
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1381 GCCCGGTTTGAAATACTGCAAGTGCATACACGCAACATGACACTAGGAGACGACGTCGAT 1440
Query 1532 CTCAGAAAAATCGCTGAAGAAACCGATCTCTTCACAGGTGCCGAGCTCGAGGGTCTATGC 1591
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1441 CTCAGAAAAATAGCTGAAGAAACCGATCTCTTTACAGGTGCCGAGCTCGAGGGTCTATGC 1500
Query 1592 AGAGAAAGCGGAACTGTCTCACTTAGAGAAAACATCGCAGCAACCGCTGTCTTCAATCGC 1651
|||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||
Sbjct 1501 AGAGAAAGCGGAACTGTCTCCCTTAGAGAAAACATCGAAGCAACCGCCGTCTTCAATCGC 1560
Query 1652 CATTTCCAAACCGCAAAAAGCTCGCTTAAACCAGCGTTAACAATCGAAGAAGTCGAAACT 1711
|||||||||||||| |||||||| |||||||| || || ||||| |||||||||||||||
Sbjct 1561 CATTTCCAAACCGCTAAAAGCTCACTTAAACCCGCATTGACAATTGAAGAAGTCGAAACT 1620
Query 1712 TATTCATCATTCAGGAAGGCGGCGAAAAGATCTGATTCGAAACCGATTCCGATTAACAAA 1771
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1621 TATTCATCATTCAGGAAGGCG---AAAAGATCTGATTCAAAACCGATTCCGATTAACAAA 1677
Query 1772 AAGAAGGCGACTTCCACCGTCTTCGGATTCTCATGGCAA-TTAGGTGTTTTGAGCTTATT 1830
||||||||||| ||||| || |||||||||||||||||| || ||||||||||||||| |
Sbjct 1678 AAGAAGGCGACATCCACTGTTTTCGGATTCTCATGGCAAATT-GGTGTTTTGAGCTTAAT 1736
Query 1831 GTTGCTTGCTACTGGAAACTATTACTTCAACCACACTAAACATGAATTACTAGTAGCTTC 1890
|| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||
Sbjct 1737 ATTACTTGCTACTGGAAACTATTACTTCAACCACACTAAACATGATTTACGAGTAGCGTC 1796
Query 1891 TGCTACATGA 1900
||||||||||
Sbjct 1797 TGCTACATGA 1806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74237887505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5