BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G03680.1

Length=659
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg322665 jgi|Araly1|322665|fgenesh1_pm.C_scaffold_5000209           606    5e-173


> Ahg322665 jgi|Araly1|322665|fgenesh1_pm.C_scaffold_5000209
Length=363

 Score =  606 bits (328),  Expect = 5e-173
 Identities = 353/364 (97%), Gaps = 5/364 (1%)
 Strand=Plus/Plus

Query  95   ATGGGTCGTGGAAACAGCTGTGGTGGAGGTCAAAGCTCATTGGATTATCTC-TT--TGGT  151
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||
Sbjct  1    ATGGGTCGTGGAAACAGCTGTGGTGGAGGTCAAAGCTCATTGGATTATCTCTTTGGTGGT  60

Query  152  GGTGACGCTCCTGCTCCTAAGCCAGTTCCAGCTCCTCGTCCCGCTCCTACTG-AGTCTAA  210
            |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct  61   GGTGACGCTCCTGCTCCTAAGCCAGTTCCAGCTCCTCGTCCCGCTCCTACTGAAG-CTAA  119

Query  211  CAACGGACCTGCACCACCAGTAACAGCTGTGACTGCAACCGCACTCACGACTGCTACTAC  270
            ||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct  120  CAACGGAACTGCACCACCAGTAACAGCTGCGACCGCAACCGCACTCACGACTGCTACTAC  179

Query  271  TTCTGTTGAGCCTGCAGAGCTTAACAAGCAGATTCCTGCTGGTATCAAAACTCCTGTTAA  330
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  TTCTGTTGAGCCAGCAGAGCTTAACAAGCAGATTCCTGCTGGTATCAAAACTCCTGTTAA  239

Query  331  CAACTATGCCAGAGCTGAAGGACAGAACACCGGCAACTTCCTCACTGACCGTCCTTCGAC  390
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  CAACTATGCCAGAGCTGAAGGACAGAACACCGGCAACTTCCTCACTGACCGTCCTTCGAC  299

Query  391  CAAAGTTCACGCAGCTCCGGGAGGAGGATCATCCTTGGATTATCTCTTCACTGGTGGCAA  450
            ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  300  CAAAGTTCATGCAGCTCCTGGAGGAGGATCATCCTTGGATTATCTCTTCACTGGTGGCAA  359

Query  451  GTAA  454
            ||||
Sbjct  360  GTAA  363



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24169929378


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5