BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03690.1
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896342 jgi|Araly1|896342|Al_scaffold_0005_308 1053 0.0
Ahg896340 jgi|Araly1|896340|Al_scaffold_0005_306 1048 0.0
> Ahg896342 jgi|Araly1|896342|Al_scaffold_0005_308
Length=681
Score = 1053 bits (570), Expect = 0.0
Identities = 644/681 (95%), Gaps = 0/681 (0%)
Strand=Plus/Plus
Query 161 ATGATTATTGAAAGAGCTCGAGTTCCGTTGAGCCGATGGCAACAAGCGGCCGTGGCGATG 220
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1 ATGATTATTGAAAGAGCTCGAGTTCCGTTGAGCCGATGGCAACAAGCGGCGGTGGCTATG 60
Query 221 GGATCTGCTCTCGGTGCGTTGGTTGATCCTCGTAGAGCGGATCTAATCGCTGCTCTCGGC 280
||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 61 GGATCTGCTATCGGTGCGTTGGTAGATCCTCGTAGAGCGGATCTGATCGCTGCTCTTGGT 120
Query 281 GAAACTACCGGTAAACCAGCTTTTGAAATGGTTCTTGAGAGAATGAAGAAGAGCGAAGAA 340
||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 GAAACCACTGGTAAACCAGCTTTTGAAATGGTTCTTGAGAGAATGAAGAAAAGCGAAGAA 180
Query 341 GGAAGAGCTATATTATTGGAGCGTCCTCGAGTTGTGTCAGAGCAAGTAGGTCATGCTTGG 400
||||||||||||||||||||| | ||||| || |||||||||||||||||||||||||||
Sbjct 181 GGAAGAGCTATATTATTGGAGAGACCTCGTGTAGTGTCAGAGCAAGTAGGTCATGCTTGG 240
Query 401 GATCTACCAGAAAACACATTTGGAGCTGCATATGCTAAATTCATGGGATCTAGAAACTTC 460
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATCTACCTGAAAACACATTTGGAGCTGCATATGCTAAATTCATGGGATCTAGAAACTTC 300
Query 461 TCTCCCGATGATCGTCCGCCCGTAAGATTCATGGAGACGGATGAATTGGCTTACGTAGCG 520
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 301 TCTCCCGATGATCGTCCGCCCGTGAGATTCATGGAGACGGATGAATTGGCTTATGTTGCA 360
Query 521 ACACGGGCACGCGAAGTTCACGACTTATGGCACACTCTGTTTGGCCTTCCTACGAATCTT 580
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACACGGGCGCGGGAAGTTCATGACTTATGGCACACTCTGTTTGGCCTTCCTACGAATCTT 420
Query 581 ATCGGCGAGTCGTCTTTGAAAGTTATCGAGTTTGAGCAAATGTATCTTCCGATGTGTATG 640
|||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 421 ATCGGCGAGTCGGCTTTGAAAGTTATAGAGTTTGAGCAGATGTATCTTCCGATGTGTATG 480
Query 641 CTCTCTGTGATTGGAGGTACTGTGAGGTTCAACGAGAAGCAAAGATCAATGTTCTTGAAG 700
|| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 CTTTCTGTGATTGGAGGCACTGTGAGGTTCAACGAGAAGCAGAGATCAATGTTCTTGAAG 540
Query 701 CATTACCTTCCTTGGGCTGTTCGTGCTGGAAGACAATGCACTGACCTCATGTGTGTGTAC 760
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 541 CATTACCTTCCTTGGGCAGTTCGAGCAGGAAGACAATGCACTGACCTCATGTGTGTGTAC 600
Query 761 TATGAGCGTCACTTTAGTGAAGACTTGGAGCAAGTTCGTAGAAAATGGGGAATCATCCCT 820
|| || |||||||||||||||||||| |||||||| || |||||||||||||| ||||||
Sbjct 601 TACGAACGTCACTTTAGTGAAGACTTAGAGCAAGTCCGGAGAAAATGGGGAATTATCCCT 660
Query 821 GCTCCTCAACATCCTAAATGA 841
|||||||||||||||||||||
Sbjct 661 GCTCCTCAACATCCTAAATGA 681
> Ahg896340 jgi|Araly1|896340|Al_scaffold_0005_306
Length=681
Score = 1048 bits (567), Expect = 0.0
Identities = 643/681 (94%), Gaps = 0/681 (0%)
Strand=Plus/Plus
Query 161 ATGATTATTGAAAGAGCTCGAGTTCCGTTGAGCCGATGGCAACAAGCGGCCGTGGCGATG 220
||||| || ||||||||||||||||||||||| |||||||||||||| || ||||| |||
Sbjct 1 ATGATCATCGAAAGAGCTCGAGTTCCGTTGAGGCGATGGCAACAAGCTGCGGTGGCAATG 60
Query 221 GGATCTGCTCTCGGTGCGTTGGTTGATCCTCGTAGAGCGGATCTAATCGCTGCTCTCGGC 280
||||||||| ||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 61 GGATCTGCTATCGGTGCGTTGGTAGATCCTCGTAGAGCGGATCTGATCGCAGCTCTCGGT 120
Query 281 GAAACTACCGGTAAACCAGCTTTTGAAATGGTTCTTGAGAGAATGAAGAAGAGCGAAGAA 340
||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 121 GAAACGACTGGTAAACCAGCTTTTGAAATGGTTCTTGAGAGGATGAAGAAGAGCGATGAA 180
Query 341 GGAAGAGCTATATTATTGGAGCGTCCTCGAGTTGTGTCAGAGCAAGTAGGTCATGCTTGG 400
|||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 181 GGAAGAGCTATATTATTGGAACGTCCTCGTGTAGTGTCAGAGCAAGTAGGTCATGCTTGG 240
Query 401 GATCTACCAGAAAACACATTTGGAGCTGCATATGCTAAATTCATGGGATCTAGAAACTTC 460
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATCTACCAGACAACACATTTGGAGCTGCATATGCTAAATTCATGGGATCTAGAAACTTC 300
Query 461 TCTCCCGATGATCGTCCGCCCGTAAGATTCATGGAGACGGATGAATTGGCTTACGTAGCG 520
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 301 TCTCCCGATGATCGTCCGCCCGTGAGATTCATGGAGACGGATGAATTGGCTTATGTTGCA 360
Query 521 ACACGGGCACGCGAAGTTCACGACTTATGGCACACTCTGTTTGGCCTTCCTACGAATCTT 580
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACACGGGCGCGTGAAGTTCATGACTTATGGCACACTCTGTTTGGCCTTCCTACGAATCTT 420
Query 581 ATCGGCGAGTCGTCTTTGAAAGTTATCGAGTTTGAGCAAATGTATCTTCCGATGTGTATG 640
|| ||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 421 ATTGGCGAGTCGGCTTTGAAAGTTATAGAGTTTGAGCAGATGTATCTTCCGATGTGTATG 480
Query 641 CTCTCTGTGATTGGAGGTACTGTGAGGTTCAACGAGAAGCAAAGATCAATGTTCTTGAAG 700
|| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 CTTTCTGTGATTGGAGGCACTGTGAGGTTCAACGAGAAGCAGAGATCAATGTTCTTGAAG 540
Query 701 CATTACCTTCCTTGGGCTGTTCGTGCTGGAAGACAATGCACTGACCTCATGTGTGTGTAC 760
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 541 CATTACCTTCCTTGGGCTGTTCGAGCAGGAAGACAATGCACTGACCTCATGTGTGTGTAC 600
Query 761 TATGAGCGTCACTTTAGTGAAGACTTGGAGCAAGTTCGTAGAAAATGGGGAATCATCCCT 820
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 601 TATGAGCGTCACTTTAGTGAAGACTTAGAGCAAGTTCGAAGAAAATGGGGAATCATCCCA 660
Query 821 GCTCCTCAACATCCTAAATGA 841
|||||||||||||||||||||
Sbjct 661 GCTCCTCAACATCCTAAATGA 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39571587846
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5