BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03710.1
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896343 jgi|Araly1|896343|Al_scaffold_0005_309 1170 0.0
> Ahg896343 jgi|Araly1|896343|Al_scaffold_0005_309
Length=807
Score = 1170 bits (633), Expect = 0.0
Identities = 754/807 (93%), Gaps = 30/807 (4%)
Strand=Plus/Plus
Query 355 atgggaagagggaaagttgagctgaagaggatagagaacaagaTCAATAGACAAGTTACT 414
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGAGGAAAAGTGGAGCTGAAGAGGATAGAGAACAAGATCAATAGACAAGTTACT 60
Query 415 TTTGCAAAGAGAAGAAATGGTTTGCTCAAGAAGGCTTATGAGCTTTCTGTCCTTTGTGAT 474
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTGCAAAGAGAAGGAATGGTTTGCTCAAGAAGGCTTATGAGCTTTCTGTCCTTTGTGAT 120
Query 475 GCTGAGATTGCTCTTCTCATTTTCTCTAACCGTGGCAAGCTCTACGAATTCTGCAGCAGC 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTGAGATTGCTCTTCTCATTTTCTCTAACCGTGGCAAGCTCTACGAATTCTGCAGCAGC 180
Query 535 CCTAGTGGTATGGCGAGGACGGTTGATAAGTATAGAAAACATAGTTATGCAACAATGGAT 594
|||||||||||||||| ||| ||||| |||||||||||| |||| |||||||||||||||
Sbjct 181 CCTAGTGGTATGGCGAAGACAGTTGACAAGTATAGAAAATATAGCTATGCAACAATGGAT 240
Query 595 CCAAATCAATCAGCTAAAGACTTGCAGGATAAGTATCAAGACTACTTGAAGCTTAAATCA 654
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 CCAAATCAATCAGCTAAAGACTTGCAGGATAAGTACCAAGACTACTTGAAGCTTAAATCA 300
Query 655 AGAGTTGAGATCCTTCAACATTCACAAAGGCATTTGCTAGGTGAAGAGCTATCCGAGATG 714
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 AGAGTTGAGATCCTTCAACATTCACAAAGGCATTTGCTAGGTGAAGAGCTAGCCGAGATG 360
Query 715 GATGTGAATGAGCTTGAGCATCTCGAACGCCAAGTAGATGCATCACTAAGACAAATAAGA 774
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 361 GATGTGAATGAGCTTGAGCAACTAGAACGCCAAGTAGATGCATCACTAAGACAAATAAGA 420
Query 775 TCTACCAAGGCTCGGTCTATGCTTGATCAACTATCTGACCTCAAAACTAAGGAGGAAATG 834
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCAACCAAGGCTCGGACTATGCTTGATCAACTATCTGACCTCAAAACTAAGGAGGAAATG 480
Query 835 TTATTGGAAACCAATAGAGATCTTAGGAGAAAGTTGGAGGACAGTGATGCAGCACTTACT 894
|||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 481 TTATTGGAAACCAACAGAGATCTTAGGAGAAAGTTGGATGAAAGTGATGCAGCACTTACT 540
Query 895 CAATCGTTTTGGGGAAGTTCTGCTGCAGaacaa-c--aacaacaacatcaacaaca---- 947
||||||||||||||| |||||||||||||||| | |||| ||||||||||||||
Sbjct 541 CAATCGTTTTGGGGAGGTTCTGCTGCAGAACATTCCCAACAGCAACATCAACAACAACAA 600
Query 948 --gcaaca--a----------GGCATGAGCTCTTATCAATCAAACCCTCCAATTCAGGAA 993
|||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 601 CAGCAACATCAACAACAACAAGGCATGAGCTCTTATCAATCAAACCCTCCAATTCAGGAA 660
Query 994 GCAGGTTTCTTCAAGCCTCTACAAGGCAATGTAGCATTGCAAATGAGCAGTCATTACAAT 1053
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 661 GCAGGTTTCTTCAAGCCTCTACAAGGCAATGTAGCATTGCAAATAAGCAGTCATTACAAT 720
Query 1054 CACAATCCTGC-------A-AA-TGCAACCAACTCTGCAACAACATCACAGAATGTTAAT 1104
|||| |||||| | || ||||| |||||||||||||||||||||||||||||||
Sbjct 721 CACAGTCCTGCTGCTGTGACAAATGCAAGCAACTCTGCAACAACATCACAGAATGTTAAT 780
Query 1105 GGATTCTTCCCTGGATGGATGGTCTGA 1131
|||||||||||||||||||||||||||
Sbjct 781 GGATTCTTCCCTGGATGGATGGTCTGA 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50169758772
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5