BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03720.1
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936167 jgi|Araly1|936167|scaffold_500358.1 869 0.0
> Ahg936167 jgi|Araly1|936167|scaffold_500358.1
Length=535
Score = 869 bits (470), Expect = 0.0
Identities = 517/539 (96%), Gaps = 6/539 (1%)
Strand=Plus/Plus
Query 175 CTGAGAGTGGGAGGAAAGTGATGGTTGTTGTGGACACAACTTCACAAACTAAGAATGCTC 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTGAGAGTGGGAGGAAAGTGATGGTTGTTGTGGACACAACTTCACAAACTAAGAATGCTC 60
Query 235 TTCAATGGGCTTTAACACATTGTGTTCAAGATGAAGATAATATCACTCTTCTCCATGTCA 294
||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 61 TTCAATGGGCTTTAACACATTGTGTTCAAGATGAAGACAATATCACTCTCCTTCATGTCA 120
Query 295 CAAGAACACCCGTAGGACAAGCTATAGATGAGACACAAAGGGAGAGAAACTCAAGGGCTC 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAAGAACACCCGTAGGACAAGCTATAGATGAGACACAAAGGGAGAGAAACTCAAGGGCTC 180
Query 355 ATGAACTAGTTCATCCATTGAAGAATTTTTGTCAACTCAAGAAACCTAACGTCAAAACGG 414
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 181 ATGAACAAGTTCATCCATTGAAGAACTTTTGTCAACTCAAGAAACCTAACGTCAAAACAG 240
Query 415 AGATAGTGGTGGTTGAAACGGCGGAGGAGAAAGGTAAGACGATAGTGGAGGAATCAAAGA 474
|||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||
Sbjct 241 AGATAGTGGTGGTTGAAACGGCGGAGGAAAAAGGGAAGACGATTGTTGAGGAATCAAAGA 300
Query 475 AACAAGGAGCAGGCGTTTTGGTGTTAGGGCAGAGAAAGAGAACCTCGAAGTGGCGCGTGA 534
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 AACAAGGAGCAGGCGTTTTGGTTTTAGGGCAGAGAAAGAGAACCTCGAAGTGGCGCGTGA 360
Query 535 TTTGGAAATGGCGTACGAAGGGAGGAATGGGAGGAGGAGTGGTCGAGTATTGTATTCATA 594
| |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||
Sbjct 361 TATGGAAATGGCGTACCAAGGGAGGAATGGGAGGAGTAGT---CGAGTATTGTATTCATA 417
Query 595 ACTCCGATTGTATGGCTATTGCCGTAAGGAAGAAGAGTAACAATGGAGGTTACTTGATCA 654
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 418 ACTCCGATTGTATGGCTATTGCCGTAAGGAAGAAAAGTAACAATGGAGGTTACTTGATCA 477
Query 655 CCACGAAACGTCACAAAGATTTCTGGCTCTTGGCTTAATTTTT-ATTTCAA-ACAAATT 711
||||||||||||||||||||||||||||||||||||||||||| |||| || ||| |||
Sbjct 478 CCACGAAACGTCACAAAGATTTCTGGCTCTTGGCTTAATTTTTTATTT-AACACACATT 535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31298914857
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5