BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03740.1
Length=857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484283 jgi|Araly1|484283|fgenesh2_kg.5__275__AT2G03740.1 1026 0.0
> Ahg484283 jgi|Araly1|484283|fgenesh2_kg.5__275__AT2G03740.1
Length=642
Score = 1026 bits (555), Expect = 0.0
Identities = 615/644 (95%), Gaps = 3/644 (0%)
Strand=Plus/Plus
Query 1 TCTAACAAACTAAACTCTTTCCTTTTGATTCTGCTTACTCCCAAAAACACACATTTAAAC 60
|||||||||||||||||||||| |||||||||| || |||||||||||||||||||| ||
Sbjct 1 TCTAACAAACTAAACTCTTTCC-TTTGATTCTGTTTGCTCCCAAAAACACACATTTACAC 59
Query 61 ATCTTAGAGAGATGTCGATCTCCGGAGCTGTGCTTAGTGGGTTGGGTCCTTCGTTCTTGA 120
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 60 ATCTTAGAGATATGTCGATCTCCGGAGCTGTGCTTAGTGGGTTAGGTCCTTCGTTCTTGA 119
Query 121 TCAGTGGAGGCAAGAGAAGCGGCGTTGGCGGTGGAGCTATGAAAGTTGGCCGGAAGAATG 180
|||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||
Sbjct 120 TCAGTGGAGGCAAGAGAAGCGGAGTTGGCGGTGGAGCTATGAGAGTTAGCCGGAAGAATG 179
Query 181 TGATCATTGCACCTCAGCGCAAGAAGTCATGGGTCTCAGCCGCCGTGAAAGGTGCTGGTA 240
|||||||| | |||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 180 TGATCATTTCTCCTCAGCGCAAGAAGTCATGGGTCTCGGCGGCCGTGAAAGGTGCTGGCA 239
Query 241 ACTCACCGAACGACCCCAAATGGCTTGATGATGCCTCAGAGAAAGCTTCGGGGTACGTGA 300
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 ACTCAACGAACGACCCCAAATGGCTTGATGATGCCTCAGAGAAAGCTTCGGAGTACGTGA 299
Query 301 AAGAGAAGGGAAGTGAA-GTGGGAAACGTGTCTGCTCAAAAGGGACAAGAGCTTCAAAAT 359
| |||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 AGGAGAAGGGAAGT-AATGTGGGAAACGTGTCTGCTCAAAAGGGACAAGAGCTTCAAACT 358
Query 360 CAGATGGAGAGAGCAAAAGACTACATTTTTGGGAAAGCTGGTGAAGCGATGGACTCGGTG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CAGATGGAGAGAGCAAAAGACTACATTTTTGGGAAAGCTGGTGAAGCGATGGACTCGGTG 418
Query 420 GCTGAAAATGCAAAGAGAGCTTCGGATTTTGTGACCGAGAAAGGCAAAGAGGTGAAGGAA 479
|||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||
Sbjct 419 GCTGAAAATGCAAAGAGAGCTTCGGAGTATGTGACCGAGAAAGGCAAAGAGGCGAAGGAA 478
Query 480 GAAACTACTTCAAGGACGGACAAAGCCAAAGATTTTATCGTTGAAAAAGCCGGTGACGTA 539
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 479 GAAACTGCTTCAAGGACCGACAAAGCCAAAGATTTTATCGTTGAAAAAGCCGGTGACATC 538
Query 540 AAAGATACGGCTATGGATATGAGAAACAAAACGTCTAAGTACGTCGGAGATAAAGCAACG 599
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AAAGATACGGCAACGGATATGAGAAACAAAACGTCTAAGTACGTCGGAGATAAAGCAACG 598
Query 600 GAGGCTAAAGAAGCAATATTGCCTCCAAAAACTGATGCATAGAT 643
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GAGGCTAAAGAAGCAATATTGCCTCCAAAAACTGATGCATAGAT 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31718266944
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5