BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03750.1
Length=1255
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484284 jgi|Araly1|484284|fgenesh2_kg.5__276__AT2G03750.1 1498 0.0
> Ahg484284 jgi|Araly1|484284|fgenesh2_kg.5__276__AT2G03750.1
Length=1078
Score = 1498 bits (811), Expect = 0.0
Identities = 959/1027 (93%), Gaps = 24/1027 (2%)
Strand=Plus/Plus
Query 88 AAATTATCACAATGGAGGCTTCTAAAGAAGCTCATCACCTTCCAAACTACATGAAAGACG 147
||||||| ||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 61 AAATTATTACAATGGAGGCTTCTGAAGAA--TC-TCACCTTCCAAACTACATGAAAGACG 117
Query 148 ACAACGTTAGTCAAGAAACCAAGAACTTGATCACTTCTCTACCTTCAGACAAAGATTTCA 207
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 118 ACAACGTTAGTCAAGAAACCAAGAACTTGATCGCTTCTCTACCTTCAGACAAAGATTTCA 177
Query 208 TGGGTTATGGTCTCTACAACTACAAAGGTTGTTGGTACTATCCAAACACACTCCAAGCCG 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TGGGTTATGGTCTCTACAACTACAAAGGTTGTTGGTACTATCCAAACACACTCCAAGCCG 237
Query 268 TTCTTGACGTCCAAAAACACTTCAAGCCACGAGATACTGATATAATCCTCGCTTCTTTGC 327
|||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 238 TTCTTGACTTCCAAAAACACTTCAAGCCACGAGGTACCGATATAATCCTCGCTTCTTTGC 297
Query 328 CCAAAGGTGGAACCACTTGGCTCAAATCCCTAATTTTCGCTGTTGTACATAGAGA-AAAG 386
||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||
Sbjct 298 CCAAAGGTGGAACCACTTGGCTCAAATCCCTTGTTTTCGCCGTTGTACATAGAGATAAA- 356
Query 387 TACCGCG-GAACCCCTCAAACACATCCTTTGCTCTT-ACAAAACCCTCATGACCTTGTCC 444
||||||| |||||| ||||| |||||| |||| || |||||||||||||||||||||||
Sbjct 357 TACCGCGAAAACCCC-CAAACCCATCCTCTGCT-TTCACAAAACCCTCATGACCTTGTCC 414
Query 445 CATTTCTTGAGGTTGAGTTATACGCTAATAGCCAAATTCCGGATCTCGCAAAGTATT-CT 503
||||||||||| |||||||||||||||||||||||||||| |||||| |||||| || ||
Sbjct 415 CATTTCTTGAGCTTGAGTTATACGCTAATAGCCAAATTCCAGATCTCACAAAGT-TTCCT 473
Query 504 TCTCCTATGATCTTTTCTACACACATGCACTTACAAGCATTGCGTGAAGCCACCACAAAA 563
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 474 TCTCCTATGATCTTTTCTACACACACGCACTTACAAGCATTGCGTGAAGCCACTACAAAA 533
Query 564 G---------CTTGCAAAACCGTATATGTGTGTAGAGGTATCAAAGATACGTTTGTCTCC 614
| ||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 534 GCTTCTTCACCTTGCAAAATTGTGTATGTGTGTAGAGGTATCAAAGATACGTTTGTCTCC 593
Query 615 GGCTGGCATTATAGAAACATGTTGCATCGCACCAAGATGGATCAAGCCACTTTTGAGCTC 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GGCTGGCATTATAGAAACATGTTGCATCGCACCAAGATGGATCAAGCCACTTTTGAGCTC 653
Query 675 ATGTTTGATGCTTATTGTAGAGGAGTTCTCTTATATGGACCTTATTGGGAACATGTATTG 734
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 654 ATGTTTGATGCTTATTGTAGAGGAGTTCTCTTATATGGACCCTATTGGGAACATGTGTTG 713
Query 735 AGCTATTGGAAAGGGAGCTTGGAAGCA-AAGGAGAATGTTCTTTTCATGAAGTACGAAGA 793
||||||||||||||||||||||||| | |||||||||||||||||||||||||| || ||
Sbjct 714 AGCTATTGGAAAGGGAGCTTGGAAG-ATAAGGAGAATGTTCTTTTCATGAAGTATGAGGA 772
Query 794 GATAATTGAGGAGCCTCGTGTTCAAGTCAAGAGACTCGCCGAGTTCTTGGAATGTCCATT 853
|||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 773 GATAATCGAGGACCCTCGTATTCAAGTCAAGAGACTCGCCGAGTTCTTGAAATGTCCATT 832
Query 854 CACCAAGGAAGAAGAAGAAAGTGGATCGGTGGAGGAGATCTTGAAGTTGTGTAGTTTACG 913
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 833 CACCGCGGAAGAAGAAGAATGTGGATCGGTGGAGGAGATCTTGAAGTTGTGTAGTTTACG 892
Query 914 AAATTTAAGCAATTTGGAGGTTAATAAGAATGGGACAACGAGAATTGGTGTAGATTCTCA 973
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 893 AAATTTAAGCAATTTGGAGGTTAATAAGAAGGGGACAACGAGAATTGGTCTAGATTCTCA 952
Query 974 GGTGTTCTTTAGGAAAGGTGAAGTTGGTGATTGGAAGAATCATCTTACGCCACAAATGGC 1033
| | || ||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 953 GATATTTTTTAGGAAAGGTGAAGTCGGTGATTGGAAGAATCATCTTACGCCTCAAATGGC 1012
Query 1034 GAAAACCTTTGATGAGATTATTGACTATAGACTAG-GAGACTCCGGTTTGATATTTCAAT 1092
|||||| |||||||||||||||| | |||||| | ||| |||||||||||||||||||
Sbjct 1013 CAAAACCGTTGATGAGATTATTGAATGTAGACT-GCGAGGTTCCGGTTTGATATTTCAAT 1071
Query 1093 AAGGTTG 1099
|||||||
Sbjct 1072 AAGGTTG 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46891187910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5