BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03760.1
Length=1327
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484285 jgi|Araly1|484285|fgenesh2_kg.5__277__AT2G03760.1 1655 0.0
> Ahg484285 jgi|Araly1|484285|fgenesh2_kg.5__277__AT2G03760.1
Length=1214
Score = 1655 bits (896), Expect = 0.0
Identities = 1141/1251 (91%), Gaps = 49/1251 (4%)
Strand=Plus/Plus
Query 1 ATTCTACGTGCTCTTCAAGTAAAGGATGTGTTGACCATTTCACCACCCAAACTAATATCT 60
||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 1 ATTCTACGTGCTCTTCAAGTAAAGGATGTGTTGACCA---CTCCACCCAAAATAATATCT 57
Query 61 TAGAAGCAAAAG-CATTGTGAAATTTACTTGTAGAACAACCTTCTCATTCATATATAAAA 119
|||||||||||| |||||| ||||||||||||||||| | | || ||||| || | |
Sbjct 58 TAGAAGCAAAAGAGATTGTGCTATTTACTTGTAGAACAAAC-T-TC--TCATACAT-ATA 112
Query 120 GCAGACAAGCATTAGCATCATAGATACATAGAGAGCTTAAGCAAAAGATCTCATACTTTC 179
| | |||| | || || || ||| ||||||||||||||||||||| | |
Sbjct 113 -TA-A-AAGC---A-CA-CA-AG---CAT-TAGAGCTTAAGCAAAAGATCTC--A----C 153
Query 180 AAGATTGATCGATCTCTCAAGTCTCAACAATGTCATCATCATCATCAGTTCCTGCTTACT 239
| | | | |||| ||||||| ||||||||||||||||||| |||||
Sbjct 154 -------A-C--T-T-TCAA-----AACAATG---TCATCATCATCAGTTCCTGATTACT 193
Query 240 TGGGAGATGAAGATCTGACACAAGAAACAAGAGCTCTGATCTCTTCTCTTCCTAAAGAGA 299
|| ||||||| ||| ||||||||||| |||||| |||||||||||||||||| |||||||
Sbjct 194 TGAGAGATGATGATGTGACACAAGAAGCAAGAGATCTGATCTCTTCTCTTCCAAAAGAGA 253
Query 300 AAGGTTGGTTAGTGAGTGAAATATATGAATTCCAAGGACTTTGGCACACACAAGCTATTT 359
|||||||||||||||||||||| ||| ||| |||||||| |||||||||||||||| | |
Sbjct 254 AAGGTTGGTTAGTGAGTGAAATGTATCAATACCAAGGACGTTGGCACACACAAGCTCTGT 313
Query 360 TACAAGGAATCTTGATCTGCCAAAAACGCTTTGAAGCTAAAGATTCCGACATTATCCTCG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 TACAAGGAATCTTGATCTGCCAAAAACGCTTTGAAGCTAAAGATTCCGACATTATCCTCG 373
Query 420 TCACTAATCCTAAATCAGGTACCACTTGGTTAAAAGCTCTTGTCTTTGCTCTCCTTAACC 479
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 TGACTAATCCTAAATCAGGTACCACTTGGTTAAAAGCTCTTGTCTTTGCTCTCCTTAACC 433
Query 480 GACACAAGTTTCCAGTTTCTTCTTCTGGTAACCATCCTCTTCTGGTCACCAATCCACACC 539
||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || |
Sbjct 434 GACACAAGTTTCCAGTTTCTTCTTCTGGTAATCATCCTCTTCTGGTTACCAATCCGCATC 493
Query 540 TTCTTGTGCCCTTCTTGGAAGGAGTTTACTACGAGTCCCCAGATTTCGATTTCTCCAGTT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 494 TTCTTGTGCCCTTCTTGGAAGGAGTTTACTACGAGTCCCCAGATTTCGATTTCTCCGGGT 553
Query 600 TGCCTTCTCCAAGACTGATGAACACGCACATATCGCATCTTTCGCTCCCCGAGTCTGTTA 659
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 554 TGCCTTCTCCAAGACTGATGAACACGCACATATCACATCTTTCGCTGCCCGAGTCTGTTA 613
Query 660 AGAGCTCGTCTTGTAAGATTGTGTATTGTTGTAGGAACCCTAAGGACATGTTTGTGTCCT 719
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 614 AGAGCTCCTCTTGTAAGATTGTGTATTGTTGTAGGAACCCTAAGGACATGTTTGTCTCCT 673
Query 720 TATGGCATTTTGGGAAAAAGCTAGCTCCTGAGGAAACCGCGGATTATCCTATCGAAAAAG 779
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 TGTGGCATTTTGGGAAGAAGCTAGCTCCTGAGGAAACCGCGGATTATCCTATCGAAAAAG 733
Query 780 CGGTTGAAGCGTTTTGTGAAGGGAAGTTTATAGGTGGACCCTTTTGGGATCATATATTGG 839
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 734 CGGTTGAAGCGTTTTGTGAAGGGAAGTTAATAGGTGGACCTTTTTGGGATCATATATTGG 793
Query 840 AGTACTGGTATGCAAGCCGCGAGAATCCGAACAAGGTCTTGTTTGTTACTTACGAGGAGC 899
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 AGTATTGGTATGCAAGCCGCGAGAATCCGAACAAGGTCTTGTTTGTTACTTACGAGGAGC 853
Query 900 TAAAGAAGCAGACCGAAGTTGAGATGAAGCGGATCGCGGAGTTCTTGGAATGTGGCTTTA 959
| |||||||| |||| || |||||||||||||||||| |||||||||| |||||| ||||
Sbjct 854 TTAAGAAGCAAACCGGAGCTGAGATGAAGCGGATCGCTGAGTTCTTGGGATGTGGTTTTA 913
Query 960 TTGAAGAAGAAGAAGTGAGAGAGATTGTGAAGTTGTGTAGCTTTGAGAGTTTAAGTAATT 1019
|||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| |
Sbjct 914 TTGAAGAAGAAGAAGTGAAAGAGATCGTGACGTTGTGTAGCTTTGAGAGTTTAAGTAAAT 973
Query 1020 TGGAAGTTAACAAAGAAGGGAAATTGCCAAATGGAATAGAGACTAAAACTTTCTTTAGAA 1079
|||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 974 TGGAAGTTAATAAGGAAGGGAAATTGCCAAATGGAATGGAGACTAAAACTTTCTTTAGAA 1033
Query 1080 AAGGAGAGATTGGAGGATGGAGAGATACTTTGAGTGAGTCATTGGCAGAGGAAATTGATA 1139
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1034 AAGGAGAAATTGGAGGATGGAGAGATACTTTGAGTGAGTCCTTGGCAGAGGAAATTGATA 1093
Query 1140 GAACCATTGAAGAGAAGTTTAAAGGTTCTGGTCTTAAATTTTCTTCTTGAATCAATCTTT 1199
|||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||
Sbjct 1094 GAACCATTGAAGAGAAGTTTCAAGGTTCTGGTCTAAAATTCTCTTCTTGAATCAATCTTT 1153
Query 1200 GAAACTTGTTCTCATGTTCttgttttgcttcaattatgttatttcttgttt 1250
|||||||||||||||||| |||||||||||||||||||||| | | |||||
Sbjct 1154 GAAACTTGTTCTCATGTTTTTGTTTTGCTTCAATTATGTTAAT-CATGTTT 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49636037934
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5