BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G03770.1 Length=975 Score E Sequences producing significant alignments: (Bits) Value Ahg936173 jgi|Araly1|936173|scaffold_500364.1 1402 0.0 > Ahg936173 jgi|Araly1|936173|scaffold_500364.1 Length=1015 Score = 1402 bits (759), Expect = 0.0 Identities = 907/979 (93%), Gaps = 8/979 (1%) Strand=Plus/Plus Query 1 ATGACAAAATCCGAAACCACTCTTTCGAAGTTATTGGTAGAATCTG-AGTTAGTCCAAGA 59 |||||||||||||||||||||||||||||||||||||||||||||| | || | |||||| Sbjct 21 ATGACAAAATCCGAAACCACTCTTTCGAAGTTATTGGTAGAATCTGAATTTTG-CCAAGA 79 Query 60 ATGCGAGGAGTTGCTGTCTTCTCTTCCGAGAGACAGAAGCGTTTT-TGCAGAGTATCTCT 118 ||| |||||||||||||||||||||| |||||||||||| |||| |||||||||||||| Sbjct 80 ATGTAAGGAGTTGCTGTCTTCTCTTCCTAGAGACAGAAGC-TTTTATGCAGAGTATCTCT 138 Query 119 ATCAATACCAGGGATTTTGGTATCCACCAAATCTTTTAGAAGGTGTTCTATATAGCCAGA 178 |||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||| Sbjct 139 ATCAATACCAAGGATTTTGGTACCCACCAAATCTCTTAGAAGGTGTTCTATACAGCCAGA 198 Query 179 AGCATTTTCAGGCCAGAGATTCAGACATCGTCCTTGCAAGCATTCCTAAGTCAGGTACAA 238 ||||||||||||| ||||||||||||||| |||||| ||||| |||||| |||||||||| Sbjct 199 AGCATTTTCAGGCAAGAGATTCAGACATCATCCTTGTAAGCAGTCCTAAATCAGGTACAA 258 Query 239 CTTGGTTGAAATCACTTGTCTTTGCTTTGATTCATAGGCAAGAATTCCAAACCCCTCTAG 298 |||||||||||||||| ||||||||| |||||||||| || ||||||||||||||||||| Sbjct 259 CTTGGTTGAAATCACTCGTCTTTGCTCTGATTCATAGACAGGAATTCCAAACCCCTCTAG 318 Query 299 TATCCCATCCTCTGCTCGATAACAACCCGCATACCCTCGTGACCTTTATCGAAGGTTTCC 358 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 319 AATCCCATCCTCTGCTCGATAACAACCCGCATACTCTCGTGACCTTTATCGAAGGTTTCC 378 Query 359 ACCTTCACACTCAAGATACTTCTCCTAGGATCTTCTCTACACACATTCCTGTAGGGTCAC 418 | ||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||| Sbjct 379 AGTTTCACACTCAAGATACTTCTCCTAGTATCTACTCTACACACATTCCTCTAGGGTCAC 438 Query 419 TCCCTGAGTCAGTTAAGGACTCGTCCTGTAAAGTTGTGTATTGCTGCAGGAACCCGAAGG 478 |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 439 TCCCAGAGTCTGTTAAGGACTCGTCCTGTAAAGTGGTGTATTGCTGCAGGAACCCAAAGG 498 Query 479 ACGCGTTTGTCTCACTTTGGCATTTCATGAAAAATTTGATTGTTAAGGAGATGGTTGGAT 538 |||||||||||||||||||||||||| ||||| ||||| | | |||||||||||||||| Sbjct 499 ACGCGTTTGTCTCACTTTGGCATTTCGTGAAACGTTTGACTCTCAAGGAGATGGTTGGAT 558 Query 539 GCACAATGGAGGAAATGGTGAGGt-ttttttGCCGAGGGTCTAGTATATACGGACCCTTT 597 ||||||||||||||||||||| || |||||| ||||||||| | || ||||| ||| Sbjct 559 GCACAATGGAGGAAATGGTGA-GTGGGTTTTGCAAAGGGTCTAGCGTTTATGGACCGTTT 617 Query 598 TGGGATCATGTATTACAGTATTGGAAAGAAAGCCGAGAAAACCCGAAAAAGGTTATGTTT 657 |||||||||| |||| |||| |||||||||||||||||||| |||||||||||||||||| Sbjct 618 TGGGATCATGCATTAGAGTACTGGAAAGAAAGCCGAGAAAATCCGAAAAAGGTTATGTTT 677 Query 658 GTAATGTATGAAGAGATGAGAGAGCAGCCTCAGGAGTGGGTGATGCGGATCGCCGAGTTC 717 || |||||||||||||||||||||||||||||| | | | |||||||||||||||||||| Sbjct 678 GTTATGTATGAAGAGATGAGAGAGCAGCCTCAGAATTCGTTGATGCGGATCGCCGAGTTC 737 Query 718 TTGGGATATTCTTTTACAGAAGAAGAGATAGAGAATGGAGTAT-TGGAAGATATCATAAA 776 ||||||| |||||||||||| |||||||||||||||||||| | | ||||||||| | || Sbjct 738 TTGGGATGTTCTTTTACAGAGGAAGAGATAGAGAATGGAGT-TCTAGAAGATATCGTGAA 796 Query 777 GCTGTGTAGTCTTGAGAATCTGAGTAAATTGGAGGTTAATGAGAAGGGTAAGTTACTGAA 836 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 797 GCTGTGTAGTCTTGAGAATCTGAGTAAACTGGAGGTTAATGAGAAGGGTAAGTTAGTGAA 856 Query 837 TGGAATGGAGACTAAGGCATTTTTTAGGAAAGGAGAGATTGGTGGATGGAGAGATACTTT 896 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 857 TGGAATGGAGACTAAGGCATTTTTTAGGAAAGGAGAGATTGGTGGATGGAGAGATACTTT 916 Query 897 AACTCCTTTGTTAGCAGAGGAAATTGATAAAACCACTAAGGAGAAACTAATTGGTTCTGA 956 |||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 917 AACTCCTTCATTAGCAGAGGAAATTGATAAAACCACTGAGCAGAAACTAATTGGTTCTGA 976 Query 957 TTTTAGATTCTTTTGCTAA 975 ||||||||||||||||||| Sbjct 977 TTTTAGATTCTTTTGCTAA 995 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36216771150 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5