BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03770.1
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936173 jgi|Araly1|936173|scaffold_500364.1 1402 0.0
> Ahg936173 jgi|Araly1|936173|scaffold_500364.1
Length=1015
Score = 1402 bits (759), Expect = 0.0
Identities = 907/979 (93%), Gaps = 8/979 (1%)
Strand=Plus/Plus
Query 1 ATGACAAAATCCGAAACCACTCTTTCGAAGTTATTGGTAGAATCTG-AGTTAGTCCAAGA 59
|||||||||||||||||||||||||||||||||||||||||||||| | || | ||||||
Sbjct 21 ATGACAAAATCCGAAACCACTCTTTCGAAGTTATTGGTAGAATCTGAATTTTG-CCAAGA 79
Query 60 ATGCGAGGAGTTGCTGTCTTCTCTTCCGAGAGACAGAAGCGTTTT-TGCAGAGTATCTCT 118
||| |||||||||||||||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 80 ATGTAAGGAGTTGCTGTCTTCTCTTCCTAGAGACAGAAGC-TTTTATGCAGAGTATCTCT 138
Query 119 ATCAATACCAGGGATTTTGGTATCCACCAAATCTTTTAGAAGGTGTTCTATATAGCCAGA 178
|||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 139 ATCAATACCAAGGATTTTGGTACCCACCAAATCTCTTAGAAGGTGTTCTATACAGCCAGA 198
Query 179 AGCATTTTCAGGCCAGAGATTCAGACATCGTCCTTGCAAGCATTCCTAAGTCAGGTACAA 238
||||||||||||| ||||||||||||||| |||||| ||||| |||||| ||||||||||
Sbjct 199 AGCATTTTCAGGCAAGAGATTCAGACATCATCCTTGTAAGCAGTCCTAAATCAGGTACAA 258
Query 239 CTTGGTTGAAATCACTTGTCTTTGCTTTGATTCATAGGCAAGAATTCCAAACCCCTCTAG 298
|||||||||||||||| ||||||||| |||||||||| || |||||||||||||||||||
Sbjct 259 CTTGGTTGAAATCACTCGTCTTTGCTCTGATTCATAGACAGGAATTCCAAACCCCTCTAG 318
Query 299 TATCCCATCCTCTGCTCGATAACAACCCGCATACCCTCGTGACCTTTATCGAAGGTTTCC 358
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 319 AATCCCATCCTCTGCTCGATAACAACCCGCATACTCTCGTGACCTTTATCGAAGGTTTCC 378
Query 359 ACCTTCACACTCAAGATACTTCTCCTAGGATCTTCTCTACACACATTCCTGTAGGGTCAC 418
| ||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||
Sbjct 379 AGTTTCACACTCAAGATACTTCTCCTAGTATCTACTCTACACACATTCCTCTAGGGTCAC 438
Query 419 TCCCTGAGTCAGTTAAGGACTCGTCCTGTAAAGTTGTGTATTGCTGCAGGAACCCGAAGG 478
|||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 439 TCCCAGAGTCTGTTAAGGACTCGTCCTGTAAAGTGGTGTATTGCTGCAGGAACCCAAAGG 498
Query 479 ACGCGTTTGTCTCACTTTGGCATTTCATGAAAAATTTGATTGTTAAGGAGATGGTTGGAT 538
|||||||||||||||||||||||||| ||||| ||||| | | ||||||||||||||||
Sbjct 499 ACGCGTTTGTCTCACTTTGGCATTTCGTGAAACGTTTGACTCTCAAGGAGATGGTTGGAT 558
Query 539 GCACAATGGAGGAAATGGTGAGGt-ttttttGCCGAGGGTCTAGTATATACGGACCCTTT 597
||||||||||||||||||||| || |||||| ||||||||| | || ||||| |||
Sbjct 559 GCACAATGGAGGAAATGGTGA-GTGGGTTTTGCAAAGGGTCTAGCGTTTATGGACCGTTT 617
Query 598 TGGGATCATGTATTACAGTATTGGAAAGAAAGCCGAGAAAACCCGAAAAAGGTTATGTTT 657
|||||||||| |||| |||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 618 TGGGATCATGCATTAGAGTACTGGAAAGAAAGCCGAGAAAATCCGAAAAAGGTTATGTTT 677
Query 658 GTAATGTATGAAGAGATGAGAGAGCAGCCTCAGGAGTGGGTGATGCGGATCGCCGAGTTC 717
|| |||||||||||||||||||||||||||||| | | | ||||||||||||||||||||
Sbjct 678 GTTATGTATGAAGAGATGAGAGAGCAGCCTCAGAATTCGTTGATGCGGATCGCCGAGTTC 737
Query 718 TTGGGATATTCTTTTACAGAAGAAGAGATAGAGAATGGAGTAT-TGGAAGATATCATAAA 776
||||||| |||||||||||| |||||||||||||||||||| | | ||||||||| | ||
Sbjct 738 TTGGGATGTTCTTTTACAGAGGAAGAGATAGAGAATGGAGT-TCTAGAAGATATCGTGAA 796
Query 777 GCTGTGTAGTCTTGAGAATCTGAGTAAATTGGAGGTTAATGAGAAGGGTAAGTTACTGAA 836
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 797 GCTGTGTAGTCTTGAGAATCTGAGTAAACTGGAGGTTAATGAGAAGGGTAAGTTAGTGAA 856
Query 837 TGGAATGGAGACTAAGGCATTTTTTAGGAAAGGAGAGATTGGTGGATGGAGAGATACTTT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 TGGAATGGAGACTAAGGCATTTTTTAGGAAAGGAGAGATTGGTGGATGGAGAGATACTTT 916
Query 897 AACTCCTTTGTTAGCAGAGGAAATTGATAAAACCACTAAGGAGAAACTAATTGGTTCTGA 956
|||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 917 AACTCCTTCATTAGCAGAGGAAATTGATAAAACCACTGAGCAGAAACTAATTGGTTCTGA 976
Query 957 TTTTAGATTCTTTTGCTAA 975
|||||||||||||||||||
Sbjct 977 TTTTAGATTCTTTTGCTAA 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36216771150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5