BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03780.1
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484287 jgi|Araly1|484287|fgenesh2_kg.5__279__AT2G03780.1 1738 0.0
> Ahg484287 jgi|Araly1|484287|fgenesh2_kg.5__279__AT2G03780.1
Length=1118
Score = 1738 bits (941), Expect = 0.0
Identities = 1064/1123 (95%), Gaps = 9/1123 (1%)
Strand=Plus/Plus
Query 1 AGACAGATGTTGAGTTGTTCTTCATCGGCGTTCCAAAGAGTAGCCTTTATGCTTATGGCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 AGACAGATGTTGAGTTGTTCTTCATCGGCGTTCCAAAGAGTAGCCTTTATGCTAATGGCT 60
Query 61 CCCAAATTAAAACCTCAGAGACTCCATCAAATTGCAGAGAGTGGTGTTGAACATTTGGTT 120
|||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct 61 CCCAAATTAAAACCTCAGAGACTCCATCAAATTGCAGAGACTGGTGTAGAACAATTGGTT 120
Query 121 AAGAAAGCTAGGACGATGAGTACTGAATCCTCAATGAAAGATGCTTTCTCTACTTACGCT 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 AAGAAAGCTAGGACGATGAGTACTGAATCCTCCATGAAAGATGCTTTCTCTACTTACGCT 180
Query 181 GATTATCTCAATAACTTCAATGAGAAGCGAGAAAGAGTGGTGAAGGTAAGTCGTGATATC 240
||||||||||||||||||||||||||| | |||||||| ||||||| |||||||||||||
Sbjct 181 GATTATCTCAATAACTTCAATGAGAAGAGGGAAAGAGTTGTGAAGGCAAGTCGTGATATC 240
Query 241 ACAATGAACAGCAAAAAAGTTATCTTTCAGGTTCACAGGCTCAGTAAAGACAACAAAGAG 300
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 ACAATGAACAGTAAAAAAGTTATCTTTCAGGTTCACAGGCTTAGTAAAGACAACAAAGAG 300
Query 301 GAGGTATTGGAGAAAGCAGGGAAGGATTTAGAAGCAGTGAGGGATCAACATTTTGCCCGG 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGGTTTTGGAGAAAGCAGGGAAGGATTTAGAAGCAGTGAGGGATCAACATTTTGCCCGG 360
Query 361 CTAATGAAAGAGCTTCAAGGGACTGATTTTTGGAAGCTGAGACGTGCTTATTCCCCAGGG 420
||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 CTAATGAGAGAACTTCAAGGGACTGATTTTTGGAAGCTGAGACGAGCTTATTCCCCAGGG 420
Query 421 GTGCAGGAATATGTTGAAGCTGCAACGTTTTATAAGTTCTGTTTGTCTGGGACGCTATGT 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 GTGCAGGAATATGTTGAGGCTGCAACGTTTTATAAGTTCTGTTTGTCTGGGACTCTATGT 480
Query 481 ACTCTCGATGAGATTAACACAACGCTTGTACCACTTAGTGACCCTTCTTTAGAGCCGTTG 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 ACTCTCGATGAGATTAACACAACGCTTGTACCACTTAGTGACCCTTCATTAGAGCCGTTG 540
Query 541 CAGATCAATATCCTCGACTATATTCTTGGGCTTGCAGATTTGACGGGAGAGCTAATGCGG 600
|||||||||||||| |||||||||||||||||||| ||| |||| ||||||||||||||
Sbjct 541 CAGATCAATATCCTTGACTATATTCTTGGGCTTGCGGATCTGACTGGAGAGCTAATGCGA 600
Query 601 ATGGCAATTGGTCGCATATCAGACGGTGAAATCGAATTCGCGCAGAGGATTTGTCAGTTT 660
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 601 ATGGCAATTGGTCGCATATCAGATGGTGAAATCGAATTCGCGCAGAGGATTTGCCAGTTT 660
Query 661 GTTCGACAGATTCATAGGGAACTAATGCTAGTTGTGCCAAAGATGGATGACAGTTATGAC 720
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 661 GTTCGACAGATTCATAGGGAACTTATGCTAGTTGTGCCAAAGATGGATGACAGTTACGAC 720
Query 721 ATGAAATCCAAGATGGAAGTGATGCTTCAAAGTGTGATCAAAATAGAGAACGCTTGCTTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATGAAATCCAAGATGGAAGTGATGCTTCAAAGTGTGATCAAAATAGAGAACGCTTGCTTT 780
Query 781 AGCGTTCACGTGAGAGGATTAGAGTATATTCCACTGCTTGGAGATAATGCACCAACATCA 840
||||| ||||||||||||| |||||||||||| |||||||||||| |||| ||||||||
Sbjct 781 AGCGTCCACGTGAGAGGATCAGAGTATATTCCGCTGCTTGGAGATGATGCGCCAACATCG 840
Query 841 TACCTATTGGGAGCTGCTGATGTCGAATGATTAAAAGTGAGTGGTCTTTTCCGTCTCTCG 900
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 841 TACCTATTGGGAGCTGCTGATGTCGAGTGATTAAAAGTGAGTGGTCTTTTCCGTCTCTCA 900
Query 901 GACACATTT-TAAAGTTCTTGTTAAGGTTGGTGTGTTTGCGACAAGTAGGATCGTTTTAG 959
||||||||| || |||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 901 GACACATTTCTAG-GTTCTTGTTAAGGTTGTTGTGTTTGCGACAAGTAGTATCGTTTTAA 959
Query 960 TATGGACTTATCTTCAGAGAATTTTAGCCACTTCTTACTTCTGAGGAACTTTAAATCTGT 1019
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 960 TATGCACTTATCTTCAGAGAATTTTAGCCACTTCTTGCTTCTGAGGAACTTTAAATCTCT 1019
Query 1020 ATGCTGCAAGACTTTT-AAGAAACAAATGGTTAGAACTAGATGTAAAACTTTTCT-TTTG 1077
|||||||||||||||| || |||| |||||||||||| || |||| ||||| ||| |||
Sbjct 1020 ATGCTGCAAGACTTTTTAA-AAACGAATGGTTAGAACAAGTTGTAGAACTTATCTGTTT- 1077
Query 1078 TTGAATGGAAGCTAATTTATA-ATAGAATCTAGCAATTACTTT 1119
||||||| ||||| ||||| ||||||||||||| |||||||
Sbjct 1078 TTGAATGCAAGCT--TTTATTGATAGAATCTAGCAGTTACTTT 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41706471198
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5