BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G03800.1 Length=1262 Score E Sequences producing significant alignments: (Bits) Value Ahg322675 jgi|Araly1|322675|fgenesh1_pm.C_scaffold_5000219 1598 0.0 Ahg905825 jgi|Araly1|905825|Al_scaffold_0003_2953 1526 0.0 > Ahg322675 jgi|Araly1|322675|fgenesh1_pm.C_scaffold_5000219 Length=1086 Score = 1598 bits (865), Expect = 0.0 Identities = 970/1022 (95%), Gaps = 2/1022 (0%) Strand=Plus/Plus Query 1 AAAGCAAACGCAACTCATATCCAATCGCTTTTAAACGCCAATAATCGCGTTACAGTAACA 60 |||||||||||||||| |||| |||||||| ||||||| || |||||||||||||||| Sbjct 64 AAAGCAAACGCAACTCCTATCAAATCGCTTCAAAACGCCGATTTTCGCGTTACAGTAACA 123 Query 61 ACTCGAAAAATGGTAACACTAATCGTGGCCACCACCGCCGATCCAGCGTCGATCAACCCT 120 |||||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||| ||| Sbjct 124 ACTCGAAAAATGGTGACACTGATCGTAGCCACCACCTCCGATCCAGCGTCGATCAATCCT 183 Query 121 GCGGCGGCGCTTCTCGCCATGCCCGGTTGGACCGCCGGACCTATCTTACCGCCGGACATA 180 || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 184 GCAGCGGCGCTTCTCGCCATGCCCGGTTGGATCGCCGGACCTATCTTACCGCCGGACATA 243 Query 181 AAGAGTTTTAGTAACAAGCAAACGAGAGTGATTCAACACGATAGATCTATAGTAAAAGAA 240 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 244 AAGAGTTTCAGTAACAAGCAAACGAGAGTGATTCAACACGATAGATCTATAGTTAAAGAA 303 Query 241 GACGATCTCGATTTACGTTGGGAAGAAGCTACCGGTGAAGTTGTTGATGAAGTCATCTTC 300 |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 304 GACGATCTTGATTTACGTTGGGAAGAAGCTACCGGTGAAGTTATTGATGAAGTCATCTTC 363 Query 301 CTCAGCCGTCACACCGCCGTCTCAAATCGTCCTGCTTTAACTGTTCATCCGATTGGAGTG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 364 CTCAGCCGTCACACCGCCGTCTCAAATCGTCCTGCTTTAACTGTTCATCCGATTGGAGTG 423 Query 361 CTTCATCTAAAGGATGGAGAATCACCGCCGCAAGGAGGAAAGCCTGGATGGGCGGCGTTG 420 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 424 CTTCATCTAAAGGATGGAGAATCACCGCCGCAAGGAGGAAAGCCAGGATGGGCGGCGTTG 483 Query 421 CCAAGCACTAGAATTGGTCCATGGTTTCGTCTTTTGAAGAAAATGGCTGAAGCTCATGGT 480 |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 484 CCAAACCCTAGAATTGGTCCATGGTTTCGTCTTTTGAAGAAAATGGCTGAAGCTCATGGT 543 Query 481 TTAGTTCCTGAGTTTGAGATAACATTGGAAGCTACTCATCATGGACCAATAACTAACAAG 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 544 TTAGTTCCTGAGTTTGAGATAACATTGGAAGCTACTCATCATGGACCAATAACTAACAAG 603 Query 541 CCAACGATGTTTTTGGAGATTGGTAGTACCGAGGAATACTGGAAGAG-GCAAGACGCAGC 599 ||||||||||||||||||||||||||||| ||||||||||||||||| | | || || || Sbjct 604 CCAACGATGTTTTTGGAGATTGGTAGTACAGAGGAATACTGGAAGAGAG-ATGATGCGGC 662 Query 600 TCAAGTCATGGCTCTTTTAATGTGGGAAGGTCTTGGGCTAGGAGGCAGTGAAGAAGTAGG 659 |||||||||||||||||||||||||||||| ||||||||||||||| |||||| || || Sbjct 663 TCAAGTCATGGCTCTTTTAATGTGGGAAGGACTTGGGCTAGGAGGCGGTGAAGCCGTGGG 722 Query 660 GAAGTGGAAAAGTGAAACCGGAAAGAGGAAAGTTCTTTTAGGCATTGGAGGTGGACATTA 719 ||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||| || Sbjct 723 GAACTGGAACAGTGAAACCGGAAAGAGGAAAGTTCTCTTAGGGATTGGAGGTGGACACTA 782 Query 720 TGCTCCTCGTCACATGGATATAGCTTTGAAAGATGATATTTGGGTAGGCCATTTGCTTTC 779 ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||| Sbjct 783 TGCTCCTCGTCACATGGATATAGTTTTGAAAGACGATATTTGGGTAGGCCATTTACTTTC 842 Query 780 TGGATACTCATTACCGATGGAAGATCCAACTCAAACCAAAACAACGCCTGGAGAGAATTA 839 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 843 TGGATACTCATTACCGATGGAAGATCCAACTCAAACCAAAACAACGCCTGTAGAGAATTA 902 Query 840 CATTGGTGGAAATTGGAGACAATCAATTAAGGCAGCATTTGAAGCTACTAAAGCATCATT 899 ||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| Sbjct 903 CATTGGTGGAAATTGGAGACAGTCTATTAAGGCAGCATTTGAAGCTACTAAAGCAGCATT 962 Query 900 CCCCGGAGGCGAGATCTTGGCTCATCTTGACCACAAGAGCTTCAAAGGATGGCAAAAGAA 959 ||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 963 CCCAGGAGGCGAAATATTGGCTCATCTTGACCACAAGAGCTTCAAAGGATGGCAAAAGAA 1022 Query 960 GGCCATTACAGAGTTTTTAGCAGAAGAGAGCATCAATGTTGGGAAGCCAAACGATTTCAC 1019 ||| |||||||||||||| | |||||||| ||||||||||||||||||||||||||||| Sbjct 1023 GGCAATTACAGAGTTTTTGGGTGAAGAGAGTATCAATGTTGGGAAGCCAAACGATTTCAC 1082 Query 1020 AT 1021 || Sbjct 1083 AT 1084 > Ahg905825 jgi|Araly1|905825|Al_scaffold_0003_2953 Length=954 Score = 1526 bits (826), Expect = 0.0 Identities = 911/953 (96%), Gaps = 2/953 (0%) Strand=Plus/Plus Query 70 ATGGTAACACTAATCGTGGCCACCACCGCCGATCCAGCGTCGATCAACCCTGCGGCGGCG 129 ||||| ||||| ||||| ||||||||| ||||||||||||||||||| ||||| |||||| Sbjct 1 ATGGTGACACTGATCGTAGCCACCACCTCCGATCCAGCGTCGATCAATCCTGCAGCGGCG 60 Query 130 CTTCTCGCCATGCCCGGTTGGACCGCCGGACCTATCTTACCGCCGGACATAAAGAGTTTT 189 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 61 CTTCTCGCCATGCCCGGTTGGATCGCCGGACCTATCTTACCGCCGGACATAAAGAGTTTC 120 Query 190 AGTAACAAGCAAACGAGAGTGATTCAACACGATAGATCTATAGTAAAAGAAGACGATCTC 249 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 121 AGTAACAAGCAAACGAGAGTGATTCAACACGATAGATCTATAGTTAAAGAAGACGATCTT 180 Query 250 GATTTACGTTGGGAAGAAGCTACCGGTGAAGTTGTTGATGAAGTCATCTTCCTCAGCCGT 309 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 181 GATTTACGTTGGGAAGAAGCTACCGGTGAAGTTATTGATGAAGTCATCTTCCTCAGCCGT 240 Query 310 CACACCGCCGTCTCAAATCGTCCTGCTTTAACTGTTCATCCGATTGGAGTGCTTCATCTA 369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CACACCGCCGTCTCAAATCGTCCTGCTTTAACTGTTCATCCGATTGGAGTGCTTCATCTA 300 Query 370 AAGGATGGAGAATCACCGCCGCAAGGAGGAAAGCCTGGATGGGCGGCGTTGCCAAGCACT 429 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | || Sbjct 301 AAGGATGGAGAATCACCGCCGCAAGGAGGAAAGCCAGGATGGGCGGCGTTGCCAAACCCT 360 Query 430 AGAATTGGTCCATGGTTTCGTCTTTTGAAGAAAATGGCTGAAGCTCATGGTTTAGTTCCT 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AGAATTGGTCCATGGTTTCGTCTTTTGAAGAAAATGGCTGAAGCTCATGGTTTAGTTCCT 420 Query 490 GAGTTTGAGATAACATTGGAAGCTACTCATCATGGACCAATAACTAACAAGCCAACGATG 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GAGTTTGAGATAACATTGGAAGCTACTCATCATGGACCAATAACTAACAAGCCAACGATG 480 Query 550 TTTTTGGAGATTGGTAGTACCGAGGAATACTGGAAGAG-GCAAGACGCAGCTCAAGTCAT 608 |||||||||||||||||||| ||||||||||||||||| | | || || ||||||||||| Sbjct 481 TTTTTGGAGATTGGTAGTACAGAGGAATACTGGAAGAGAG-ATGATGCGGCTCAAGTCAT 539 Query 609 GGCTCTTTTAATGTGGGAAGGTCTTGGGCTAGGAGGCAGTGAAGAAGTAGGGAAGTGGAA 668 ||||||||||||||||||||| ||||||||||||||| |||||| || ||||| ||||| Sbjct 540 GGCTCTTTTAATGTGGGAAGGACTTGGGCTAGGAGGCGGTGAAGCCGTGGGGAACTGGAA 599 Query 669 AAGTGAAACCGGAAAGAGGAAAGTTCTTTTAGGCATTGGAGGTGGACATTATGCTCCTCG 728 |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| Sbjct 600 CAGTGAAACCGGAAAGAGGAAAGTTCTCTTAGGGATTGGAGGTGGACACTATGCTCCTCG 659 Query 729 TCACATGGATATAGCTTTGAAAGATGATATTTGGGTAGGCCATTTGCTTTCTGGATACTC 788 |||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 660 TCACATGGATATAGTTTTGAAAGACGATATTTGGGTAGGCCATTTACTTTCTGGATACTC 719 Query 789 ATTACCGATGGAAGATCCAACTCAAACCAAAACAACGCCTGGAGAGAATTACATTGGTGG 848 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 720 ATTACCGATGGAAGATCCAACTCAAACCAAAACAACGCCTGTAGAGAATTACATTGGTGG 779 Query 849 AAATTGGAGACAATCAATTAAGGCAGCATTTGAAGCTACTAAAGCATCATTCCCCGGAGG 908 |||||||||||| || |||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 780 AAATTGGAGACAGTCTATTAAGGCAGCATTTGAAGCTACTAAAGCAGCATTCCCAGGAGG 839 Query 909 CGAGATCTTGGCTCATCTTGACCACAAGAGCTTCAAAGGATGGCAAAAGAAGGCCATTAC 968 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 CGAAATATTGGCTCATCTTGACCACAAGAGCTTCAAAGGATGGCAAAAGAAGGCCATTAC 899 Query 969 AGAGTTTTTAGCAGAAGAGAGCATCAATGTTGGGAAGCCAAACGATTTCACAT 1021 ||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 900 AGAGTTTTTGGCAGAAGAGAGTATCAATGTTGGGAAGCCAAACGATTTCACAT 952 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47158048329 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5