BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03800.1
Length=1262
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322675 jgi|Araly1|322675|fgenesh1_pm.C_scaffold_5000219 1598 0.0
Ahg905825 jgi|Araly1|905825|Al_scaffold_0003_2953 1526 0.0
> Ahg322675 jgi|Araly1|322675|fgenesh1_pm.C_scaffold_5000219
Length=1086
Score = 1598 bits (865), Expect = 0.0
Identities = 970/1022 (95%), Gaps = 2/1022 (0%)
Strand=Plus/Plus
Query 1 AAAGCAAACGCAACTCATATCCAATCGCTTTTAAACGCCAATAATCGCGTTACAGTAACA 60
|||||||||||||||| |||| |||||||| ||||||| || ||||||||||||||||
Sbjct 64 AAAGCAAACGCAACTCCTATCAAATCGCTTCAAAACGCCGATTTTCGCGTTACAGTAACA 123
Query 61 ACTCGAAAAATGGTAACACTAATCGTGGCCACCACCGCCGATCCAGCGTCGATCAACCCT 120
|||||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||| |||
Sbjct 124 ACTCGAAAAATGGTGACACTGATCGTAGCCACCACCTCCGATCCAGCGTCGATCAATCCT 183
Query 121 GCGGCGGCGCTTCTCGCCATGCCCGGTTGGACCGCCGGACCTATCTTACCGCCGGACATA 180
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 184 GCAGCGGCGCTTCTCGCCATGCCCGGTTGGATCGCCGGACCTATCTTACCGCCGGACATA 243
Query 181 AAGAGTTTTAGTAACAAGCAAACGAGAGTGATTCAACACGATAGATCTATAGTAAAAGAA 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 244 AAGAGTTTCAGTAACAAGCAAACGAGAGTGATTCAACACGATAGATCTATAGTTAAAGAA 303
Query 241 GACGATCTCGATTTACGTTGGGAAGAAGCTACCGGTGAAGTTGTTGATGAAGTCATCTTC 300
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 304 GACGATCTTGATTTACGTTGGGAAGAAGCTACCGGTGAAGTTATTGATGAAGTCATCTTC 363
Query 301 CTCAGCCGTCACACCGCCGTCTCAAATCGTCCTGCTTTAACTGTTCATCCGATTGGAGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 CTCAGCCGTCACACCGCCGTCTCAAATCGTCCTGCTTTAACTGTTCATCCGATTGGAGTG 423
Query 361 CTTCATCTAAAGGATGGAGAATCACCGCCGCAAGGAGGAAAGCCTGGATGGGCGGCGTTG 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 424 CTTCATCTAAAGGATGGAGAATCACCGCCGCAAGGAGGAAAGCCAGGATGGGCGGCGTTG 483
Query 421 CCAAGCACTAGAATTGGTCCATGGTTTCGTCTTTTGAAGAAAATGGCTGAAGCTCATGGT 480
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 CCAAACCCTAGAATTGGTCCATGGTTTCGTCTTTTGAAGAAAATGGCTGAAGCTCATGGT 543
Query 481 TTAGTTCCTGAGTTTGAGATAACATTGGAAGCTACTCATCATGGACCAATAACTAACAAG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TTAGTTCCTGAGTTTGAGATAACATTGGAAGCTACTCATCATGGACCAATAACTAACAAG 603
Query 541 CCAACGATGTTTTTGGAGATTGGTAGTACCGAGGAATACTGGAAGAG-GCAAGACGCAGC 599
||||||||||||||||||||||||||||| ||||||||||||||||| | | || || ||
Sbjct 604 CCAACGATGTTTTTGGAGATTGGTAGTACAGAGGAATACTGGAAGAGAG-ATGATGCGGC 662
Query 600 TCAAGTCATGGCTCTTTTAATGTGGGAAGGTCTTGGGCTAGGAGGCAGTGAAGAAGTAGG 659
|||||||||||||||||||||||||||||| ||||||||||||||| |||||| || ||
Sbjct 663 TCAAGTCATGGCTCTTTTAATGTGGGAAGGACTTGGGCTAGGAGGCGGTGAAGCCGTGGG 722
Query 660 GAAGTGGAAAAGTGAAACCGGAAAGAGGAAAGTTCTTTTAGGCATTGGAGGTGGACATTA 719
||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 723 GAACTGGAACAGTGAAACCGGAAAGAGGAAAGTTCTCTTAGGGATTGGAGGTGGACACTA 782
Query 720 TGCTCCTCGTCACATGGATATAGCTTTGAAAGATGATATTTGGGTAGGCCATTTGCTTTC 779
||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||
Sbjct 783 TGCTCCTCGTCACATGGATATAGTTTTGAAAGACGATATTTGGGTAGGCCATTTACTTTC 842
Query 780 TGGATACTCATTACCGATGGAAGATCCAACTCAAACCAAAACAACGCCTGGAGAGAATTA 839
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 843 TGGATACTCATTACCGATGGAAGATCCAACTCAAACCAAAACAACGCCTGTAGAGAATTA 902
Query 840 CATTGGTGGAAATTGGAGACAATCAATTAAGGCAGCATTTGAAGCTACTAAAGCATCATT 899
||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||
Sbjct 903 CATTGGTGGAAATTGGAGACAGTCTATTAAGGCAGCATTTGAAGCTACTAAAGCAGCATT 962
Query 900 CCCCGGAGGCGAGATCTTGGCTCATCTTGACCACAAGAGCTTCAAAGGATGGCAAAAGAA 959
||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CCCAGGAGGCGAAATATTGGCTCATCTTGACCACAAGAGCTTCAAAGGATGGCAAAAGAA 1022
Query 960 GGCCATTACAGAGTTTTTAGCAGAAGAGAGCATCAATGTTGGGAAGCCAAACGATTTCAC 1019
||| |||||||||||||| | |||||||| |||||||||||||||||||||||||||||
Sbjct 1023 GGCAATTACAGAGTTTTTGGGTGAAGAGAGTATCAATGTTGGGAAGCCAAACGATTTCAC 1082
Query 1020 AT 1021
||
Sbjct 1083 AT 1084
> Ahg905825 jgi|Araly1|905825|Al_scaffold_0003_2953
Length=954
Score = 1526 bits (826), Expect = 0.0
Identities = 911/953 (96%), Gaps = 2/953 (0%)
Strand=Plus/Plus
Query 70 ATGGTAACACTAATCGTGGCCACCACCGCCGATCCAGCGTCGATCAACCCTGCGGCGGCG 129
||||| ||||| ||||| ||||||||| ||||||||||||||||||| ||||| ||||||
Sbjct 1 ATGGTGACACTGATCGTAGCCACCACCTCCGATCCAGCGTCGATCAATCCTGCAGCGGCG 60
Query 130 CTTCTCGCCATGCCCGGTTGGACCGCCGGACCTATCTTACCGCCGGACATAAAGAGTTTT 189
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTCTCGCCATGCCCGGTTGGATCGCCGGACCTATCTTACCGCCGGACATAAAGAGTTTC 120
Query 190 AGTAACAAGCAAACGAGAGTGATTCAACACGATAGATCTATAGTAAAAGAAGACGATCTC 249
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 AGTAACAAGCAAACGAGAGTGATTCAACACGATAGATCTATAGTTAAAGAAGACGATCTT 180
Query 250 GATTTACGTTGGGAAGAAGCTACCGGTGAAGTTGTTGATGAAGTCATCTTCCTCAGCCGT 309
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 GATTTACGTTGGGAAGAAGCTACCGGTGAAGTTATTGATGAAGTCATCTTCCTCAGCCGT 240
Query 310 CACACCGCCGTCTCAAATCGTCCTGCTTTAACTGTTCATCCGATTGGAGTGCTTCATCTA 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CACACCGCCGTCTCAAATCGTCCTGCTTTAACTGTTCATCCGATTGGAGTGCTTCATCTA 300
Query 370 AAGGATGGAGAATCACCGCCGCAAGGAGGAAAGCCTGGATGGGCGGCGTTGCCAAGCACT 429
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||
Sbjct 301 AAGGATGGAGAATCACCGCCGCAAGGAGGAAAGCCAGGATGGGCGGCGTTGCCAAACCCT 360
Query 430 AGAATTGGTCCATGGTTTCGTCTTTTGAAGAAAATGGCTGAAGCTCATGGTTTAGTTCCT 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGAATTGGTCCATGGTTTCGTCTTTTGAAGAAAATGGCTGAAGCTCATGGTTTAGTTCCT 420
Query 490 GAGTTTGAGATAACATTGGAAGCTACTCATCATGGACCAATAACTAACAAGCCAACGATG 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGTTTGAGATAACATTGGAAGCTACTCATCATGGACCAATAACTAACAAGCCAACGATG 480
Query 550 TTTTTGGAGATTGGTAGTACCGAGGAATACTGGAAGAG-GCAAGACGCAGCTCAAGTCAT 608
|||||||||||||||||||| ||||||||||||||||| | | || || |||||||||||
Sbjct 481 TTTTTGGAGATTGGTAGTACAGAGGAATACTGGAAGAGAG-ATGATGCGGCTCAAGTCAT 539
Query 609 GGCTCTTTTAATGTGGGAAGGTCTTGGGCTAGGAGGCAGTGAAGAAGTAGGGAAGTGGAA 668
||||||||||||||||||||| ||||||||||||||| |||||| || ||||| |||||
Sbjct 540 GGCTCTTTTAATGTGGGAAGGACTTGGGCTAGGAGGCGGTGAAGCCGTGGGGAACTGGAA 599
Query 669 AAGTGAAACCGGAAAGAGGAAAGTTCTTTTAGGCATTGGAGGTGGACATTATGCTCCTCG 728
|||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 600 CAGTGAAACCGGAAAGAGGAAAGTTCTCTTAGGGATTGGAGGTGGACACTATGCTCCTCG 659
Query 729 TCACATGGATATAGCTTTGAAAGATGATATTTGGGTAGGCCATTTGCTTTCTGGATACTC 788
|||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 660 TCACATGGATATAGTTTTGAAAGACGATATTTGGGTAGGCCATTTACTTTCTGGATACTC 719
Query 789 ATTACCGATGGAAGATCCAACTCAAACCAAAACAACGCCTGGAGAGAATTACATTGGTGG 848
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 720 ATTACCGATGGAAGATCCAACTCAAACCAAAACAACGCCTGTAGAGAATTACATTGGTGG 779
Query 849 AAATTGGAGACAATCAATTAAGGCAGCATTTGAAGCTACTAAAGCATCATTCCCCGGAGG 908
|||||||||||| || |||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 780 AAATTGGAGACAGTCTATTAAGGCAGCATTTGAAGCTACTAAAGCAGCATTCCCAGGAGG 839
Query 909 CGAGATCTTGGCTCATCTTGACCACAAGAGCTTCAAAGGATGGCAAAAGAAGGCCATTAC 968
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CGAAATATTGGCTCATCTTGACCACAAGAGCTTCAAAGGATGGCAAAAGAAGGCCATTAC 899
Query 969 AGAGTTTTTAGCAGAAGAGAGCATCAATGTTGGGAAGCCAAACGATTTCACAT 1021
||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 900 AGAGTTTTTGGCAGAAGAGAGTATCAATGTTGGGAAGCCAAACGATTTCACAT 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47158048329
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5