BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03810.1
Length=1787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484289 jgi|Araly1|484289|fgenesh2_kg.5__281__AT2G03810.2 2290 0.0
> Ahg484289 jgi|Araly1|484289|fgenesh2_kg.5__281__AT2G03810.2
Length=1842
Score = 2290 bits (1240), Expect = 0.0
Identities = 1427/1517 (94%), Gaps = 14/1517 (1%)
Strand=Plus/Plus
Query 110 GATTGTTGGTCGCGA-CTGG-TGCTTGAAGATATAGCTTTGGTTCTTTATGCAAGGTTTA 167
||||||| || ||| | || ||||||||||||||||| |||||||||||||||| ||||
Sbjct 197 GATTGTT--TCTCGAGCCGGTTGCTTGAAGATATAGCTCTGGTTCTTTATGCAAGATTTA 254
Query 168 CTCTCTTAGAAGAATGAGAGCAGATAATGATCACGCGCTTGGTAACTCGATAGAGATTTG 227
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 255 CTCTCTTAGAAGAATGAGAGCAGATAATGATCACGCGCTTGGTAACTCGGTAGAGATTTG 314
Query 228 TAAAGATGAATCTAAGCCGCATCAATGTCTTGATGAGAATTGGGAAGATGCAGAGCTAAA 287
||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 315 CAAAGATGAATCTAAGCCTCATCAATGCCTTGAAGAGAACTGGGAAGATGCAGAGCTAAA 374
Query 288 GGTCCCGGAAAATGGGAAGAACAACAACAATGTGTGTGAGTTGTTCTATGATACAAGAAG 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 GGTCCCGGAAAATGGGAAGAACAACAACAATGTGTGTGAGTTGTTCTATGATACAAGAAG 434
Query 348 TGGTGAAGAATGGGAGAATGAGGCCGGAAAGAAAGTTCGAGATACTAGTCATGATTGTGA 407
|| || |||||||| |||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 435 CGGCGACGAATGGGATAATGAGGCCGGAAAGAAAGTCCGAGATATTAGTCATGATTGTGA 494
Query 408 TGCTAATGTGGATTCTCCTGAGAAAAAGGATCCGGTTTTCTATATGGACAAGAATGTTAC 467
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 495 TGCTAATGTGGATTCTCCTGATAAAAAGGATCCGGTTTTCTATATGGACAAGAATGTTAC 554
Query 468 GGCCTGTGATTTACCTGAGATTGTTGTTTGTTACAAGGAGAATACTTACCATATCGTCAA 527
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 555 GGCCTGTGATTTACCTGAGATTGTTGTTTGTTACAAGGAGGATACTTACCACGTCGTCAA 614
Query 528 AGATATATGTGTCGATGAAGGTGTGCCTGTTCAGGAGAAGTTCTTATTTGGTGAGAAGGA 587
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 615 AGATATATGTGTCGATGAAGGTGTGCCTGTTCAGGAGAAGTTCTTATTCGGCGAGAAGGA 674
Query 588 TTCTGTCAAGTCTAGCTCAACAGAGGATTTGATGAAAGCAGACAAAACAAATGTGAATCC 647
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 675 TTCTGTAAAGTCTAGCTCAACAGAGGATTTGACGAAAGCAGACAAAACAAATGTGAATCC 734
Query 648 ATCAGAAACTAAGTCTGCGGAAGACAGCATCAGTAAGGTTGATGATTCTGAGTTTTGTAA 707
|||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||
Sbjct 735 TTCAGAAACTAAGTCTGCGGAAGACAGCAACAGTAAGGTTGATGATTCTGAATTCTGTAA 794
Query 708 CGATCATAAGACAGACAGAGATGTTGAAGAATCTTCAGGAGAAGATTTTGCTGATGCTGA 767
| || ||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 795 CAATTGTAAGACAGACAGAGATGTTGAAGAATCTTCAAGAGAAGATTTTGCTGATGATGA 854
Query 768 AGGTACTTCTAGCAATTACAATCAAGAGCATTTGATTGTGACAGAGGAAGTCAAGGCTTC 827
||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 855 AGG---TTCTAGCGCTTACAATCAAGAGCATTTGATTGTGACAGAGGAAGCCAAGGCTTC 911
Query 828 ACCAACACATGGGCTAAGTCCCTCTGAAATTGAACCTGATGAGAATTCAAAGGACGAAGT 887
||| | |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 912 ACCCTCGCATGGGCTAAATCCATCTGAAATTGAACCTGATGAGAATTCAAAGGACGAAGT 971
Query 888 GGCTATATCA-CAGGATAATGACTCAAAGGAATGTTTAACATTGGGAGATATTCTATCAA 946
|||||||||| | ||| | |||||||||||||| |||||| |||||||||||||||||||
Sbjct 972 GGCTATATCATC-GGAGACTGACTCAAAGGAATCTTTAACCTTGGGAGATATTCTATCAA 1030
Query 947 GGGAAGATGAACAAAAATCTCTCAACCAAGACAACATTAGCAGCGATAGTCATGAAGAAC 1006
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1031 GGGAAGATGAACAAAAATCTCTCAACCACGGTAACATTAGCAGCGATAGTCATGAAGAAC 1090
Query 1007 AATCTCCTTCTCAGCTTCAGGATAAGGAAAAAAGAAGCTTAGAAACCACAGCTATCGAAA 1066
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1091 AATCTCCTTCTCAGCTTCAGGATAAAGAAAAAAGAAGCTTAGAAACCACAGCTCTCGAAA 1150
Query 1067 CAGAGCTTGAGAAAACAGAGGAGCCAAAACAAGGAGAGGAGAAGCTTTCCTCTGTTTCTA 1126
|||||||||||||||||||||||||||||| || |||||||||| ||||||||| |||||
Sbjct 1151 CAGAGCTTGAGAAAACAGAGGAGCCAAAACCAGCAGAGGAGAAGATTTCCTCTGCTTCTA 1210
Query 1127 CAACGA-CCTCTCAAGAACCAAACAAAACTTGCAACGAACCTGAAAAGCCTGAAACTGAG 1185
|||||| ||| |||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1211 CAACGACCCT-TCAAGAACCAAATAAAACTTGCAACGACCCTGAAAAGCCTGAAACTGAG 1269
Query 1186 AATCATCATCAGCAAAACTGTTTAGTGGAAAACTCTTACGAAGACGATAAATTTTCTTCA 1245
||||||||||||||||| | ||||||||||||||||||||||| |||||| |||| |||
Sbjct 1270 AATCATCATCAGCAAAATTCCTTAGTGGAAAACTCTTACGAAGATGATAAACTTTCCTCA 1329
Query 1246 AGCAGATTTGGAGAGACGAGTTTCTCTGCAGCAGATTCAGTTTCAATATCAGGTCATATA 1305
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1330 AGCAGATTTGGAGAGACGAGTTTCTCTGCAGCAGAGTCAGTTTCAATCTCAGGTCATATA 1389
Query 1306 ACATACTCAGGACCAATTGCATACTCTGGAAGCCTCTCTGTTCGATCAGATGCAAGCACA 1365
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1390 ACATACTCAGGACCAATTGCATACTCTGGAAGCCTTTCTGTTCGATCCGATGCAAGCACA 1449
Query 1366 ACGAGTGGAAGATCCTTTGCTTTCCCAATATTGCAATCAGAATGGAACAGTAGTCCTGTA 1425
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1450 ACGAGTGGAAGATCCTTTGCTTTCCCCATATTGCAATCAGAATGGAACAGCAGTCCTGTA 1509
Query 1426 AGAATGGCGAAAGCTGATAAAAGAAGACAAAAAGGAGGATGGAGACACACTCTTCTCTGC 1485
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1510 AGAATGGCGAAAGCTGACAAGAGAAGACAAAAAGGAGGATGGAGACACACTCTTCTCTGC 1569
Query 1486 TGTAGATTCTCTTGATGTCTCTCCTCCACAATTTAGTCCTAAAGCTATTCACTTTGAAGC 1545
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1570 TGTAGATTCTCTTGATGTCTCTCCTCCACAATTTAGTCCTAAAGCTTTTCACTTTGAAGC 1629
Query 1546 ACagaagaagaagaagaagaagaggaaagaTTTATGAAATTTTATAATATTTTCTTAAAA 1605
||||| ||||||||||||||||| || |||||||||||||||| | |||||||||| ||
Sbjct 1630 ACAGAGGAAGAAGAAGAAGAAGA--AA-GATTTATGAAATTTTACAGTATTTTCTTACAA 1686
Query 1606 TGAGAGTGCtttttttt 1622
|| ||||||||||||||
Sbjct 1687 TGGGAGTGCTTTTTTTT 1703
Score = 178 bits (96), Expect = 1e-43
Identities = 129/143 (90%), Gaps = 9/143 (6%)
Strand=Plus/Plus
Query 1651 TCTCTTTTGGGTGA-T-G---AGTGGTTTA-TAGTTATGCCTTGGTGTGTAATAGGCATT 1704
|||||||||||||| | | | | ||||| || ||||||||||||||||||| ||||||
Sbjct 1703 TCTCTTTTGGGTGAGTGGTTTA-TAGTTTATTA-TTATGCCTTGGTGTGTAATTGGCATT 1760
Query 1705 TTGGTAGTTTTACAGTTTAGGTCTTTTGAGTTTGGAACCGATGAGTTATATTATAAATTT 1764
|||||||||| |||||||||| ||||||||||||||||| ||||||| ||||||||||||
Sbjct 1761 TTGGTAGTTTAACAGTTTAGGGCTTTTGAGTTTGGAACCAATGAGTT-TATTATAAATTT 1819
Query 1765 TTTAATGAAGGGCTCTTTGGATT 1787
|||||||||||||||||||||||
Sbjct 1820 TTTAATGAAGGGCTCTTTGGATT 1842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67076921445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5