BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03830.1
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484294 jgi|Araly1|484294|fgenesh2_kg.5__286__AT2G03830.1 933 0.0
> Ahg484294 jgi|Araly1|484294|fgenesh2_kg.5__286__AT2G03830.1
Length=669
Score = 933 bits (505), Expect = 0.0
Identities = 632/688 (92%), Gaps = 29/688 (4%)
Strand=Plus/Plus
Query 1 CTTTTAGTTGATATaaaagaagagaagaagaagaaaaagaaagatagcacaaaaaagCTT 60
||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 CTTTTGGTTGATATAAAAGAAGAGAAGAAGAAGAAAAAGAAAGATAGCAC-----A---- 51
Query 61 CTCATATAGCTAAAAATCACTTTGAAGAATATGAAGCTAATTAGAGTCACCCTCTTTCTT 120
| | | |||||||||||||||||||||||||||| ||||||||| | |||||||
Sbjct 52 ---A-A-A---AAAAATCACTTTGAAGAATATGAAGCTAGTTAGAGTCATCTTCTTTCTA 103
Query 121 TGTGCACTAGCCATTTTATTGCTTGTAACTCCAACATCTTCTCTACAACTTAAACATCCC 180
|||||| |||||||| |||||||| | |||||||| ||||||||||||||||||| ||||
Sbjct 104 TGTGCATTAGCCATTGTATTGCTTCTGACTCCAACTTCTTCTCTACAACTTAAACCTCCC 163
Query 181 TACTCATCTCCTAGCCAAGGTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAG 240
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 164 TACTCATCTCCTAGCCAAGGTTTGAGCAAAAAGATTGTTACGAAAATGGTGACGCGAAAG 223
Query 241 CTCATGATCATCTCTAGTGAATATGTGATGACATCAACA-TCTCATGAAGGTTCAAGCGA 299
||||||||||||||||||||| |||||||||| |||||| | |||||||||||| |||||
Sbjct 224 CTCATGATCATCTCTAGTGAACATGTGATGACGTCAACAGT-TCATGAAGGTTCGAGCGA 282
Query 300 ACAACTTCGAGTCACTTCTTCAGGAAAATCT-AAGGATgaagagaagaaactaagtgaag 358
|||||||| ||||||||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct 283 ACAACTTCAAGTCACTTCTTCAGGAAGATCTAAAGG-TGAAGAGAAGAAACTAAGTGAAG 341
Query 359 aagaagaagagaaaaaagCTCTAGCGAAATATCTATCGATGGATTATCGTACGTTTAGAA 418
||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 342 AAGAAGAAGAGAAGAAAGCTTTATCGAAATATCTATCGATGGATTATCGTACGTTTAGAA 401
Query 419 GAAGAAGACCAGTTCACAACAAGGCTTTACCTCTTGATCCATGAAAACATTATATTATTT 478
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 GAAGACGGCCAGTTCACAACAAGGCTTTACCTCTTGATCCATGAAAACATTATATTATTT 461
Query 479 CAAAATAACTAATAAAAGTTCTAGCTAGATTAATATTTGTTATTAGGATGGTTATTGGTT 538
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 462 CAGAATAACTAATAAAAGTTTTAGCTAGATTAATATTTGTTATTAGGATGGTTATTGGTT 521
Query 539 AATTGGTTGTAGTAACGTAGTTTAGTTTCTTTGG-ACCATTGAGGAACAAGTTTTGGCGA 597
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 522 AATTGGTTGTAGTAACGTAGTTTAGTTTCTTTGGGACCATTGAGGAACAAGTTTTGGCGA 581
Query 598 TATTATTGTAATTAAAGGAACATGTTCGTGTTATTTTTC-T-TA-T---A-TTAATGATA 650
||||||||||||||| |||||||||||||||||||||| | || | | |||||||||
Sbjct 582 TATTATTGTAATTAACGGAACATGTTCGTGTTATTTTTTATGTAGTTTTAATTAATGATA 641
Query 651 ATGGCCGACAAAACACTAAAACTCTGGT 678
||||||||||||||||||||||||||||
Sbjct 642 ATGGCCGACAAAACACTAAAACTCTGGT 669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24894264801
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5