BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03850.1
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484297 jgi|Araly1|484297|fgenesh2_kg.5__289__AT2G03850.1 922 0.0
> Ahg484297 jgi|Araly1|484297|fgenesh2_kg.5__289__AT2G03850.1
Length=701
Score = 922 bits (499), Expect = 0.0
Identities = 632/694 (91%), Gaps = 18/694 (3%)
Strand=Plus/Plus
Query 67 AATCTCATGGCGATGTCGATCTCCGG-AGCTGTGTTTAATGGTTTGGGTTCTTCGTTCTT 125
|||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||
Sbjct 19 AATCTCATGGCGATGTCGATCTCCGGTAG-TGTGCTTAATGGTTTGGGTTCTTCGTTCTT 77
Query 126 GATCAGTCGAGGCAAGAGAAGCGGCGTTGGACTTGGCGTAGTAGCTATGAGGGTTGGCCG 185
|||||| ||||||||||||||| | | | | ||||| ||||||||| ||||||||| ||
Sbjct 78 GATCAGCCGAGGCAAGAGAAGC-G-G-T-G--TTGGCCTAGTAGCTACGAGGGTTGGGCG 131
Query 186 GAAAAATGTGATCACTTCACCTAAGTGCAAGAAGTCGTGGGTTCCGACAGCCGTCAAAGG 245
||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 132 GAAGAATGTGATCATTTCACCTAAGTTCAAGAAGTCGTGGGTTCCGACAGCCGTCAAAGG 191
Query 246 TGATGGTAACTCAAAACTCGACCCCAAATGGCTCGATGATGCCTCACAGAAAGCTTCCGA 305
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 192 TGATGGAAACTCAAAACTCGACCCCAAATGGCTCGACGATGCCTCACAGAAAGCATCCGA 251
Query 306 CTACGTGAAGGAGAAGGGAAGCGAAGTGGGACATGCGTCTGCTCAGAAAGGGCAAGATGT 365
| ||||||||| |||||||||||||| ||||||| ||||||||| ||||| ||||| ||
Sbjct 252 GTGCGTGAAGGATAAGGGAAGCGAAGTAGGACATGTGTCTGCTCAAAAAGGACAAGAGGT 311
Query 366 TAATGATCATGTAGATAGAGCAAAGTACTATATGTTTGAGAAAGCTAGTGAAGCAATCGA 425
|||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 312 TAATGATCATATAGAGAGAGCGAAGTACTATATGTTTGAGAAAGCTAGTGAAGCAATCGA 371
Query 426 CAATGTGGCTGAAATTGCTCAGTTTGCTTCGGAGTTTGTGACGGAGAAAGGCAAGGAGAC 485
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 372 CAATGTGGCTGAAATTGCTCAGTTTGCTTCGGAGTTTGTGACGGAGAAAGGCAAAGAGAC 431
Query 486 GAAGAAAGAAACTGCTTCAATATCGGAGAAAGCCAAAGACTTCATTGTTGAAAAAGCCGG 545
|||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||
Sbjct 432 GAAGAAAGAAACTGCTTCGATGTCCGAGAAAGCCAAAGACTTCATCGTTGAAAAAGCCGG 491
Query 546 TGAAATTATAGATATAGCGACGGATGTGAGCAAGAAAACGGCCAAGTACGTCGGAGATAA 605
||| ||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||
Sbjct 492 AGAAGTTATAGATATAGCCACGGATGTTAGCAAGAAAACGGCTAAGTACGTCGGAGAAAA 551
Query 606 AGCCAA-GGAGGTTAAAGAAGCTATAATGCCTCCAAAAACTTAAAGTA-A-AGAT-TT-G 660
||| | ||||||||||||||||||||||||||||||| ||||| ||| | | || || |
Sbjct 552 AGC-AGCGGAGGTTAAAGAAGCTATAATGCCTCCAAAACCTTAA-GTATATATATATTTG 609
Query 661 ATGCAGCCCTAAACATATACGAGGTC-TTGAGGCAATGTAGCAAAAAATATGTATTATTA 719
||||||||||||||| ||| || | ||||||||||||||||||| |||||||||||
Sbjct 610 ATGCAGCCCTAAACAAATAA-AGATTATTGAGGCAATGTAGCAAAAGG-ATGTATTATTA 667
Query 720 TGCGAGATAATGAAACTGTTATAATCAGAACTCT 753
||||||||||||||||| ||||| ||||||||||
Sbjct 668 TGCGAGATAATGAAACTTTTATAGTCAGAACTCT 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27753483576
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5