BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03870.2
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484298 jgi|Araly1|484298|fgenesh2_kg.5__290__AT2G03870.2 715 0.0
> Ahg484298 jgi|Araly1|484298|fgenesh2_kg.5__290__AT2G03870.2
Length=593
Score = 715 bits (387), Expect = 0.0
Identities = 553/624 (89%), Gaps = 48/624 (8%)
Strand=Plus/Plus
Query 36 TTTGACTGACTCTGA--TTTCAC-GCGACTCCTTGTGAGATTCTCCGATTGCTTCGCCTG 92
||||||||||||||| |||| | |||||| |||||||| ||||||||||||||||||||
Sbjct 1 TTTGACTGACTCTGATTTTTCGCGGCGACTTCTTGTGAGGTTCTCCGATTGCTTCGCCTG 60
Query 93 AGTTTCTGGGTTAACTCTCCACGCCGTCACTTTGATCTTTGCTTTTCCGATCTTTAGGG- 151
|| | | ||| |||||||| |||||||||||||||||| |||||||
Sbjct 61 AG---C-----T---TCT------CGTCACTTAGATCTTTGCTTTTCCGATTTTTAGGGT 103
Query 152 TTTTTGTTTAGGGAATTGTCGAAGACTCTGCTCTAACATGTCTGGAAGAAAAGAAACGGT 211
||||| ||| || | | | | | | ||| |||||||||||||||||||||||
Sbjct 104 TTTTTCTTT--GG----G--G-A-A-T-T--TCT--GATGTCTGGAAGAAAAGAAACGGT 147
Query 212 TTTAGATTTGGCCAAGTTTGTAGATAAGGGTGTGCAAGTTAAGCTCACTGGTGGTAGACA 271
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 148 TTTAGATTTGGCCAAGTTTGTGGATAAGGGTGTGCAAGTTAAGCTCACTGGTGGTAGACA 207
Query 272 AGTGACTGGAACTCTTAAAGGCTATGACCAATTGCTTAATCTTGTTCTTGATGAAGCAGT 331
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 208 AGTGACTGGAACTCTAAAAGGCTATGACCAATTGCTTAATCTTGTTCTTGATGAAGCATT 267
Query 332 CGAGTTCGTTCGAGATCATGATGATCCTTTGAAGACTACGGATCAGACAAGACGCCTTGG 391
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 268 CGAGTTCGTTCGAGATCACGATGATCCTTTGAAGACTACGGATCAGACAAGACGCCTTGG 327
Query 392 TTTGATTGTTTGCCGTGGAACAGCGGTGATGCTTGTCTCACCAACCGATGGCACCGAAGA 451
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 328 TTTGATTGTTTGCCGTGGAACAGCGGTAATGCTTGTCTCACCAACCGATGGCACTGAAGA 387
Query 452 AATCGCTAACCCGTTCGTT-ACTGCAGAGGCTGTCTAAAGACTTTCTTCTCAAAGAATAT 510
||||||||||||||||||| | ||||| |||||||||||||||||||| |||| |||||
Sbjct 388 AATCGCTAACCCGTTCGTTCAA-GCAGAAGCTGTCTAAAGACTTTCTTCCCAAACAATAT 446
Query 511 GTCTCTCTATTAGTTTAACTTGGCGATTTAGAGAGTATTTCATCTAACTCTCTGGTGTGA 570
|||||||||||||||||||||||| ||||||||||||||| |||| ||||||| ||||||
Sbjct 447 GTCTCTCTATTAGTTTAACTTGGCCATTTAGAGAGTATTTTATCTGACTCTCTCGTGTGA 506
Query 571 TGTTGGAAACATATATGTTCAATTTAAACAATTTGGAACATCAT-GG-ACA-CTT----- 622
||||||||||||||||||||||||||||| |||||||||||||| || || |||
Sbjct 507 TGTTGGAAACATATATGTTCAATTTAAACTATTTGGAACATCATTGGCACTTCTTCTTGT 566
Query 623 -ACCTAACTTCGTTCTCAAATCTC 645
|||||||||||||||||||||||
Sbjct 567 TACCTAACTTCGTTCTCAAATCTC 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24551158548
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5