BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03890.1
Length=2893
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484301 jgi|Araly1|484301|fgenesh2_kg.5__293__AT2G03890.1 3766 0.0
Ahg471527 jgi|Araly1|471527|fgenesh2_kg.1__1481__AT1G13640.1 1349 0.0
> Ahg484301 jgi|Araly1|484301|fgenesh2_kg.5__293__AT2G03890.1
Length=2750
Score = 3766 bits (2039), Expect = 0.0
Identities = 2321/2452 (95%), Gaps = 40/2452 (2%)
Strand=Plus/Plus
Query 407 CGTTTCATGATCGGTTTAGGTATCTG-TTATATCCGGCTCGTGTTGGTTTCAGATTTAGG 465
||||||||||||| ||||||||| || || || |||| |||||||||||| ||| |||
Sbjct 332 CGTTTCATGATCGCTTTAGGTATTTGCTT-TACCCGGTTCGTGTTGGTTTTAGACAAAGG 390
Query 466 CACTGGTCTAGAAGGTCTTTCTTCGGCTACTGCTTCT-TCTGTTCACCAAAAGAAGCCTT 524
||||||||| |||||||| |||||||||||||||||| | |||| |||||||||||||||
Sbjct 391 CACTGGTCTTGAAGGTCTCTCTTCGGCTACTGCTTCTGT-TGTTTACCAAAAGAAGCCTT 449
Query 525 TTTTGGTTTCTTCTTCTGTTTCATGTCGAGGAACTTAGACAGTCCTGTTCAGACACAAAT 584
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 CTTTGGTTTCTTCTTCTGTTTCATGTCGAGGAACTTAGACAGTCCTGTTCAGACACAAAT 509
Query 585 GGCAGTGGCAGT-TTTCAAGACTCCTCTTACTGGAGCTAGTAAGATGGAAGGGAAGCAGC 643
|||||||||||| ||| |||||||| |||||||| |||| ||||||||||||||||||||
Sbjct 510 GGCAGTGGCAGTGTTT-AAGACTCCCCTTACTGGGGCTAATAAGATGGAAGGGAAGCAGC 568
Query 644 ATCATAAGCATCAGCAT-TTACAGAGGCAATCATCGGGGAGGAGAGTTTTCGTGCAGACT 702
||||||| ||||||||| || ||||||||||||||||||||| | ||||||||||| |||
Sbjct 569 ATCATAAACATCAGCATCTT-CAGAGGCAATCATCGGGGAGGCGGGTTTTCGTGCAAACT 627
Query 703 GAAACTGGTTGTGTTTTGGGGATGGAGTTGGATCGTAGTGATAATGTTCATACTGTTAAA 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 GAAACTGGTTGTGTTTTGGGGATGGAGTTGGATCGTAGTGATAATGTTCATACTGTTAAA 687
Query 763 AGGAGGCTTCAGATTGCTCTTAATTTCCCTACTGAAGAGAGTTCTTTGACTTATGGTGAT 822
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 688 AGGAGGCTTCAGATTGCTCTTAATTTCCCGACTGAGGAAAGTTCTTTGACTTATGGTGAT 747
Query 823 ATGGTGTTGACGAATGATTTGAGTGCTGTGAGGAACGATTCTCCGCTTCTGCTGAAACGG 882
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 748 ATGGTGTTGACGAATGATTTGAGTGCTGTGAGGAATGATTCTCCGCTTCTGCTGAGACGG 807
Query 883 AACTTTATGCATCGAAGCTCGTCTACTCCTTGTCTTTCGCCTACTGGGAGGGATTTGCAA 942
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 AATTTTATGCATAGAAGCTCGTCTACTCCTTGTCTTTCGCCTACTGGGAGGGATTTGCAA 867
Query 943 CAGAAAGATCGAAGTGGTCCTATTGAGATACTAGGCCATTCGGATTGCTTTTCGATTGTT 1002
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 868 CAGAAAGACCGAAGTGGTCCTATTGAGATATTAGGCCATTCGGATTGCTTTTCGATTGTT 927
Query 1003 AAACATATGGTTAAGGACATTGTTAAGGCGATGAAGATGGGTGTTGAACCGCTTCCTGTT 1062
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 AAACATATGGTGAAGGATATTGTTAAGGCGATGAAGATGGGTGTTGAACCGCTTCCTGTT 987
Query 1063 CATAGCGGGCTTGGAGGTGCTTACTATTTTAGGAACAAAAGGGGTGAGAGTGTTGCCATT 1122
||||| |||||||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 988 CATAGTGGGCTTGGAGGTGCATATTATTTTAGGAACAAAAGGGGTGAGAGTGTTGCGATT 1047
Query 1123 GTCAAGCCGACGGATGAAGAGCCGTTTGCACCTAACAACCCTAAAGGCTTTGTTGGGAAA 1182
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1048 GTCAAGCCGACAGATGAAGAGCCGTTTGCACCTAACAATCCTAAAGGCTTTGTTGGGAAA 1107
Query 1183 GCCCTTGGGCAACCTGGATTGAAGTCTTCGGTGCGAGTTGGGGAAACGGGGTTTAGAGAA 1242
||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1108 GCCCTTGGGCAGCCTGGATTAAAGTCTTCGGTGCGAGTTGGGGAAACCGGGTTTAGAGAA 1167
Query 1243 GTTGCTGCTTATCTTCTTGATTATGGTCGCTTTGCTAATGTCCCTCCAACTGCTCTTGTG 1302
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1168 GTTGCTGCTTATCTTCTTGATTATGGTCGCTTTGCTAATGTCCCTCCCACTGCTCTTGTG 1227
Query 1303 AAGATAACTCATTCTGTATTCAATGTCAACGATGGGGTGAAGGGGAACAAGCCTCGGGAG 1362
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1228 AAGATAACTCATTCTGTATTCAATGTCAATGATGGGGTGAAGGGGAACAAGCCTCGGGAG 1287
Query 1363 AAGAAGCTGGTTAGTAAGATTGCTTCTTTCCAGAAGTTTGTGGCTCATGATTTCGATGCA 1422
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 AAGAAGCTGGTTAATAAGATTGCTTCTTTCCAGAAGTTTGTGGCTCATGATTTCGATGCA 1347
Query 1423 AGTGATCATGGTACTTCAAGCTTCCCTGTAACTTCTGTGCACCGCATTGGTATTTTGGAC 1482
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1348 AGTGATCATGGTACTTCAAGCTTCCCTGTAGCTTCTGTGCACCGCATTGGTATATTGGAC 1407
Query 1483 ATAAGGATCTTCAACACAGACCGTCATGGTGGGAATCTTTTGGTGAAGAAGCTCGATGGA 1542
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1408 ATAAGGATCTTCAACACAGATCGTCATGGTGGGAATCTTTTGGTGAAGAAGCTTGATGGG 1467
Query 1543 GTTGGTATGTTTGGTCAAGTGGAGCTTATTCCAATAGACCATGGCCTCTGCCTGCCAGAA 1602
|| || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1468 GTCGGAATGTTTGGTCAAGTGGAGCTTATTCCAATTGACCATGGTCTCTGCCTGCCAGAA 1527
Query 1603 ACACTTGAGGATCCTTATTTTGAGTGGATTCATTGGCCTCAGGCATCATTACCATTCTCT 1662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1528 ACACTTGAGGATCCTTATTTTGAGTGGATTCATTGGCCTCAGGCATCATTACCATTCTCT 1587
Query 1663 GATGAAGAGGTTGACTACATACAAAGTCTTGATCCAGTGAAAGACTGTGACATGCTTAGA 1722
||||||||| |||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 1588 GATGAAGAGCTTGACTACATACAAAGTCTTGATCCATTGGAAGACTGTAACATGCTTAGA 1647
Query 1723 AGGGAACTTCCAATGATTAGAGAGGCGTGTCTTCGGGTTCTTGTTCTCTGTACTATTTTC 1782
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 AGAGAACTTCCAATGATTAGAGAGGCGTGTCTTCGGGTTCTTGTTCTCTGTACTATTTTT 1707
Query 1783 CTTAAAGAAGCTTCTGCATATGGTCTGTGTCTTGCCGAGATTGGCGAGATGATGACTCGG 1842
|| ||||||||| || | ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1708 CTCAAAGAAGCTGCTTCTTATGGGCTGTGTCTTGCTGAGATTGGCGAGATGATGACTCGG 1767
Query 1843 GAATTTCGTCCTGGAGAAGAGGAGCCAAGTGAACTGGAGGTTGTGTGTATTGAAGCCAAG 1902
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1768 GAATTTCGACCAGGAGAAGAAGAGCCAAGTGAACTGGAGGTTGTGTGTATTGAAGCCAAG 1827
Query 1903 AGATCAGTCACTGAACGAGATGTTTTCTCTCCAAGGTCAGATGTAGTAGGAGAAGCAGAG 1962
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1828 AGATCAGTCACTGAACGCGATGTTTTCTCTCCAAGGTCAGATGTAGTAGGAGAAGCAGAG 1887
Query 1963 TTTCAGTTTGATCTAGACTGTGATGATTTGGAGTCAGTCTACAGTTCTAAGATACAACTA 2022
|||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 1888 TTTCAGTTCGATCTAGACTGTGATGATTTAGAATCAGTCTACAGTTCCAAGATACAACTA 1947
Query 2023 ACCGATGACTATTTCACCAAAAACCCTTTTTCAAATGGACGTTCTTCGCTCGGgaagctt 2082
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1948 ACCGATGACTACTTCACCAAAAACCCTTTTTCAAACGGACGTTCTTCACTCGGGAAGCTT 2007
Query 2083 gaagaaagcatcaaggaagaagaagaagatgaagaagaagaagaGGACAAAACTGAAAAT 2142
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2008 GAAGAAAGCATCAAGGAAGAAGAAGAAGATGATGAAGAAGAAGAGGACAAAACTGAAAAT 2067
Query 2143 ACTGTCCCTATGATCATTATGAAAGACAGtttttttAGTTCAGCTGCTTTTCATGACAAG 2202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2068 GCTGTCCCTATGATCATTATGAAAGACAGTTTTTTTAGTTCAGCTGCTTTTCATGACAAA 2127
Query 2203 GCTCCATCTCTTTCAAAGCTTTCCACTTCAATGAAGAACACACATCTTAGTGACACGACA 2262
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 2128 GCTCCATCTCTTTCAAAGCTTTCGACTTCAATGAAGAACACACATCTTAGCGACACAACA 2187
Query 2263 CGTAAAAACCCAAAACCCTTAACCAGAGGCAAATCCGAGAACACATCGTCTGGTCACAAA 2322
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2188 CGTAAACACCCAAAACCCTTAACCAGAGGCAAATCCGAGAACACATCGTCTGGTCACAAA 2247
Query 2323 AGCGCAAACGAACAGCTTCCAGTGAGTGCAAGCTTTGTGAAAGTAGCAGACATGAAAGAA 2382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2248 AGCGCAAACGAACAGCTTCCAGTGAGTGCAAGCTTTGTGAAAGTAGCAGACATGAAAGAA 2307
Query 2383 GACGAGTGGGTTCTCTTCCTCGAGAGGTTCCAAGAGTTACTTGGACCGGCTTTCGCAAAA 2442
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 2308 GACGAGTGGGTTCTCTTCCTAGAGAGGTTCCAAGAGTTACTTGAACCGGCTTTCGCAAAA 2367
Query 2443 CGCAAAACCGCAACGTTGAGTAAGAGACAGAGACTTGGCACTTCATGCCAGTTTTGAGAG 2502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2368 CGCAAAACCGCAACGTTGAGTAAGAGACAGAGACTTGGCACTTCATGCCAGTTTTGAGAG 2427
Query 2503 TCGTATAGTAAAAAGTAAAAC-TCGAGAAGTTAAAAGAGACAGTATGGAGTAAAAAACTG 2561
||||||||||||||||||||| || || | | | |||| ||| | | ||| |
Sbjct 2428 TCGTATAGTAAAAAGTAAAACATCTCGA-G--AGA-GAGAAAGT-T--A--AAA-----G 2473
Query 2562 AAGACTTCTTCTTCAGTTCTATGGTAGTAAAAAACTAGTAGTTACTTTTGGAAGGTTTGG 2621
| ||| |||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2474 A-GACAGCTTC---AGTTCTATGGTAGTAAAAAA-TAGTAGTTACTTTTGGAAGGTTTGG 2528
Query 2622 CTTATGACAAGCGACGAGGTGAAGAAAAGGGgttttgtttgtttgtttttttaactgttt 2681
||||||||||||||| |||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct 2529 CTTATGACAAGCGACAAGGTGAAGAAAAGGGGTTTTGTTT-TTT-TTTTT--AACTGTTT 2584
Query 2682 tgtaaatatttcttttac-tactctttgtgatcttctttgtttgtttgtttggttttttt 2740
|||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||
Sbjct 2585 TGTAAATATTTCTTTTACCT-CTCTTTGTGATCTTCTTTGTTTGTTTGTTTG-TTTTTTT 2642
Query 2741 tttgccccttttatcacctt-ctcttgtttttttctttgGTATGTCCTTGTGGCTTGGCC 2799
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2643 ---GCCCCTTT-ATCACCTTTCTCTTGTTTTTTTCTTTGGTATGTCCTTGTGGCTTGGCC 2698
Query 2800 TTGTCCCATAAATAATATTAGTCTTCTTTCACTTTTTGGTGTGGTCGTTCAT 2851
||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2699 TTGTCCCATAAATAATATTAGTCTTCTTTCACTTTTTGGTGTGATCGTTCAT 2750
Score = 409 bits (221), Expect = 7e-113
Identities = 303/338 (90%), Gaps = 24/338 (7%)
Strand=Plus/Plus
Query 21 acacacacacacaGAGAGCAAGCAAAAGAGGCGGCTAGGGATCAGAGAGTGGttccttca 80
||| ||||||||| | || || ||||||||||||||||||||||||||||||||||||
Sbjct 11 ACA-ACACACACACACAG--AG--AAAGAGGCGGCTAGGGATCAGAGAGTGGTTCCTTCA 65
Query 81 ctgaaagttt-cttctttttcattctcttcttctccttcagattccttgcctcttcttca 139
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 66 CTGAAAGTTTTCTTCTTTTG-ATTCTCTTCTTCTCCTTCAGATTCCTTGCCTCTTCTTTA 124
Query 140 agattctcct-ctcttccATGTGCGTTTCTGTGCTTTTGAAGACGACGATGATGATGATG 198
|||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||| |
Sbjct 125 AGATTCTCCTTCTCTTCCATGTGCGTTTCTGTGCTTCTGAAGACGA---TGATGATGACG 181
Query 199 ATGTCTTT-ATATTGAAACCAAA-TTCGTCTCC-ACGATTGTTTCTTCTGAGTTTTGATT 255
| |||| | |||||| ||||| |||||| || ||||||||||| ||||||||||||||
Sbjct 182 -T--CTTTGA-ATTGAA-CCAAAATTCGTC-CCTACGATTGTTTCGTCTGAGTTTTGATT 235
Query 256 TTTCAGATCTCGCTTCTTTTCCGATTTGTTCAATCATCATGGCTTACCTGATGTAGTAAT 315
| |||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 236 T--CAGATCTCGCTTTTTTTTCGATTTCTTCAATCATCATGGCTTACCTGATGTAGTAAT 293
Query 316 T-GGGA-TCAAATTCATTCACAAAGCTCGAGTTTTTAT 351
| |||| |||||||||||| ||||||||||||||||||
Sbjct 294 TTGGGAATCAAATTCATTCTCAAAGCTCGAGTTTTTAT 331
> Ahg471527 jgi|Araly1|471527|fgenesh2_kg.1__1481__AT1G13640.1
Length=2375
Score = 1349 bits (730), Expect = 0.0
Identities = 1278/1535 (83%), Gaps = 67/1535 (4%)
Strand=Plus/Plus
Query 615 TGGAGCTAGTAAGATGGAAGGGAAGCAGCATCATAAGCATCAGCATT-TACAG-AGGCAA 672
||| ||||| |||||||||||||| ||| | |||||||||| | || | ||| | ||
Sbjct 380 TGGGGCTAGAAAGATGGAAGGGAAACAG--T-ATAAGCATCATC-TTCTTCAGCA-ACAG 434
Query 673 TCATCGGGGAGGAGA---GTTTTCGTGCAGACTGAAACTGGTTGTGTTTTGGGGA-TGGA 728
|| || ||||||||| ||||||||||| || |||||||| |||||||| |||| | ||
Sbjct 435 TCTTCAGGGAGGAGACGTGTTTTCGTGCAAACCGAAACTGGCTGTGTTTT-GGGAGTTGA 493
Query 729 GTTGGATCGTAGTGATAATGTTCATACTGTTAA-AAGGAGGCTTCAGATTGC-TCTTAA- 785
||||||||||| ||| |||||||||||||| || || |||||||||||||| | ||||
Sbjct 494 GTTGGATCGTAATGACAATGTTCATACTGTGAAGAA-AAGGCTTCAGATTGCGT-TTAAC 551
Query 786 TTTCCCTACTGAAGAGAGTTCTTTGA-CTTATGGTGATATGGTGTTGACGAATGATTTGA 844
||| |||||||| || || ||||||| ||| ||| ||||||||||||| |||||| ||||
Sbjct 552 TTT-CCTACTGAGGAAAGCTCTTTGACCTT-TGGGGATATGGTGTTGAAGAATGACTTGA 609
Query 845 GTGCTGTGAGGAACGATTCTCCGCTTCTGCTGAAACGGAACTTTATGCATC-GAAGCTCG 903
||||||||||||| ||||| |||||||| ||||| || ||||| ||||| | |||| |||
Sbjct 610 GTGCTGTGAGGAATGATTCACCGCTTCTCCTGAAGCGTAACTTAATGCA-CAGAAGTTCG 668
Query 904 TCTACTCCTTGTCTTTCGCCTACTGGGAGGGATTTGCAACA-GAAAGATCGAAGTGGTCC 962
|||||||| |||||||| |||||||||| ||| ||| | | ||||||||||||||||||
Sbjct 669 TCTACTCCGTGTCTTTCACCTACTGGGAATGATCTGC-AGAGGAAAGATCGAAGTGGTCC 727
Query 963 TATTGAGATAC-TAGGCCATTCGGATTGCTTT-TCGAT-TGTT-AAACATA-TGGTTAAG 1017
||||||||||| || | || ||| |||||||| | | | | || || || | | | ||
Sbjct 728 TATTGAGATACTTA-GTCACTCGCATTGCTTTAT-G-TCT-TTGAAGCAAACT-GCGAAT 782
Query 1018 GACATTGTTAAGGCGATGAAGATGGGTGTTGAACCGCTTCCTGTTCA-TAGCGGGCTTGG 1076
||||||||||||||||||||||||||||||||||| | ||||| || | | ||||||||
Sbjct 783 GACATTGTTAAGGCGATGAAGATGGGTGTTGAACCAATCCCTGT-CAATGGTGGGCTTGG 841
Query 1077 AGGTGCTTACTATTTTAGGAACAAAAGGGGTGAGAGTGTTGCCATTGTCAAGCCGACGGA 1136
||| || |||||||||||||| ||| |||| | || ||||| ||||||||||| |||||
Sbjct 842 AGGGGCATACTATTTTAGGAATGAAATGGGTCAAAGCGTTGCTATTGTCAAGCCTACGGA 901
Query 1137 TGAAGAGCCGTTTGCACCTAACAACCCTAAAGGCTTTGTTGGGAAAGCCCTTGGGCAACC 1196
|||||| |||||||| |||||||| ||||||||||| || |||||||| |||||||| ||
Sbjct 902 TGAAGAACCGTTTGCTCCTAACAATCCTAAAGGCTTCGTAGGGAAAGCGCTTGGGCAGCC 961
Query 1197 TGGATTGAAGTCTTCGGTGCGAGTTGGGGAAACGGGGTTTAGAGAAGTTGCTGCTTATCT 1256
||| || ||| |||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 962 TGGTTTAAAGCCTTCTGTGCGAGTTGGGGAAACCGGGTTTAGAGAAGTTGCTGCTTACCT 1021
Query 1257 TCTTGATTATGGTCGCTTTGCTAATGTCCCTCCAACTGCTCTTGTGAAGATAACTCATTC 1316
||||||||||| || |||||||||||| ||||| || ||||||||||||||||| || ||
Sbjct 1022 TCTTGATTATGATCACTTTGCTAATGTTCCTCCCACGGCTCTTGTGAAGATAACACACTC 1081
Query 1317 TGTATTCAATGTCAACGATGGGGTGAAGGGGAACAAGCCTCGG--GA-GAAGAAGCTGGT 1373
||| ||||||||||| ||||| || | |||||||| |||| || ||||||||||||
Sbjct 1082 TGTTTTCAATGTCAATGATGGAATGGACGGGAACAAATCTCGTAAGAAGAAGAAGCTGGT 1141
Query 1374 TAGTA--A-GATTGCTTCTTTCCAGAAGTTTGTGGCTCATGATTTCGATGCAAGTGATCA 1430
|| | | ||||||||| |||||||||||||| |||||||||| ||||| ||||||||
Sbjct 1142 CAGCAGCAAGATTGCTTCGTTCCAGAAGTTTGTACCTCATGATTTTGATGCCAGTGATCA 1201
Query 1431 TGGTACTTCAAGCTTCCCTGTAACTTCTGTGCACCGCATTGGTATTTTGGACATAAGGAT 1490
|| ||||||||||||||||| ||||||||||||||||||| || ||||||||||||||
Sbjct 1202 CGGGACTTCAAGCTTCCCTGTCGCTTCTGTGCACCGCATTGGGATATTGGACATAAGGAT 1261
Query 1491 -CTTCAACACAGACCGTCATGGTGGGAATCTTTTGGTGAAGAAGCTCGATG--GA-G-T- 1544
|| |||||||||||| |||||||| || ||||||||||||||||| |||| | | |
Sbjct 1262 TCT-CAACACAGACCGGCATGGTGGAAACCTTTTGGTGAAGAAGCTTGATGATGGTGGTG 1320
Query 1545 T-GGTATGTTTGGTCAAGTGGAGCTTATTCCAATAGACCATGGCCTCTGCCTGCCAGAAA 1603
| || | |||||||||||||||||||||||||||||| ||||| || ||| | |||||||
Sbjct 1321 TTGGGAGGTTTGGTCAAGTGGAGCTTATTCCAATAGATCATGGTCTTTGCTTACCAGAAA 1380
Query 1604 CACTTGAGGATCCTTATTTTGAGTGGATTCATTGGCCTCAGGCATCATTACCATTCTCTG 1663
||||||| |||||||| || || |||||||||||||||||||| ||| |||| |||||||
Sbjct 1381 CACTTGAAGATCCTTACTTCGAATGGATTCATTGGCCTCAGGCTTCACTACCTTTCTCTG 1440
Query 1664 ATGAAGAGGTTGACTACATACAAAGTCTTGATCCAGTGAAAGACTGTGACATGCTTAGAA 1723
| ||||| |||||||||||||||||||||||||||||||||| ||||| |||||| |||
Sbjct 1441 AAGAAGAACTTGACTACATACAAAGTCTTGATCCAGTGAAAGATTGTGAAATGCTTCGAA 1500
Query 1724 GGGAACTTCCAATGATTAGAGAGGCGTGTCTTC-GGGTTCTTGTTCTCTGTACTAT-TTT 1781
| || |||||||||||| ||||||| ||||| | ||||||| ||||| |||||| | |||
Sbjct 1501 GAGAGCTTCCAATGATTCGAGAGGCTTGTCT-CAGGGTTCTAGTTCTGTGTACTGTATTT 1559
Query 1782 CCTTAAAGAAGCTTCTGCATATGGTCTGTGTCTTGCCGAGATTGGCGAGATGATGACTCG 1841
| | ||||||||| ||| | ||| || |||||||| |||||||| ||||||||||||||
Sbjct 1560 C-TCAAAGAAGCTGCTGTTTTTGGACTTTGTCTTGCAGAGATTGGTGAGATGATGACTCG 1618
Query 1842 GGAATTTCGTCCTGGAGAAGAGGAGCCAAGTGAACTGGAGGTTGT-GTGTATTGAAGCCA 1900
||||||||| | |||||||| || ||||||||||| || | || |||||| |||||||
Sbjct 1619 AGAATTTCGTGCAGGAGAAGAAGAACCAAGTGAACTAGAAAT-GTTGTGTATCGAAGCCA 1677
Query 1901 AGAGATCAGTCACTGAACGAGATGTTTTCTCTCC-AAGGTCAGATGTAGTAGGAGAAGCA 1959
|||||| | |||||||| ||||||||| ||||| ||| |||||||||| ||||||| ||
Sbjct 1678 AGAGATTAACCACTGAACAAGATGTTTTATCTCCCAAG-TCAGATGTAGAAGGAGAAACA 1736
Query 1960 GAGTTTCAGTTTGATC-TAGACTGTGATGATTTGGAGTCAGTCTACAGTTCTAAGATACA 2018
|||||||||||||| | |||||| |||| | || | || || | ||| ||| ||
Sbjct 1737 GAGTTTCAGTTTGA-CATAGACTACAATGACCTAGACTTGGTTTATGGCTCTGAGA--CA 1793
Query 2019 ACTAACCGATGACTA-TTTCACCAAAAACCCTTTTTCAAATGGACGTTCTTCGCTCGG-g 2076
||||| ||| | ||| |||| ||||| |||||||| ||| ||||||| || || |
Sbjct 1794 GG-AACCGTTGAGTTCTTTG-CCAAGAACCCATTTTCAAACGGATGTTCTTCACTTGGAG 1851
Query 2077 aagcttgaagaaagcatcaaggaagaagaagaaga 2111
| ||| |||| ||||| |||||||||||||||
Sbjct 1852 A-GCTCAAAGAGAGCATTGCGGAAGAAGAAGAAGA 1885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109204732415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5