BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G03913.1

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg322682 jgi|Araly1|322682|fgenesh1_pm.C_scaffold_5000226           278    1e-74


> Ahg322682 jgi|Araly1|322682|fgenesh1_pm.C_scaffold_5000226
Length=222

 Score =  278 bits (150),  Expect = 1e-74
 Identities = 194/215 (90%), Gaps = 4/215 (2%)
 Strand=Plus/Plus

Query  10   ACTTCTATGATTTTTGTTCTTGTAGTGATACTGATAAACTCATTGTTTAACTTTAACGTT  69
            |||| | |||||||| |||||||||||||| ||||||||||||||||||||| |||||||
Sbjct  10   ACTTATGTGATTTTTTTTCTTGTAGTGATATTGATAAACTCATTGTTTAACTCTAACGTT  69

Query  70   TTGGCTTCATCCGTGATCGAAACAACAAAAAATGATGTGTGCTCTACTCCATGTACACGG  129
            ||||||||||| ||||| |||||| |||| ||||||||||||| | | |||||||||| |
Sbjct  70   TTGGCTTCATCGGTGATTGAAACATCAAACAATGATGTGTGCTATGCACCATGTACACAG  129

Query  130  AGGTATGGAAC-TTATGAATGTTGGCATGACTGCTTGCACGAGAGGTATAACGATGGAGG  188
            ||||||  ||| |||||||||||||||||||||||||||| |||||||||| |||||| |
Sbjct  130  AGGTAT-AAACTTTATGAATGTTGGCATGACTGCTTGCACAAGAGGTATAATGATGGA-G  187

Query  189  C-TGTGTTGATGGACGATGTTGTTGCAAAAAGTGA  222
            | ||||||||||||||||||||||||||||| |||
Sbjct  188  CGTGTGTTGATGGACGATGTTGTTGCAAAAAATGA  222



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7599463939


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5