BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G03931.1

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg322683 jgi|Araly1|322683|fgenesh1_pm.C_scaffold_5000227           350    3e-96


> Ahg322683 jgi|Araly1|322683|fgenesh1_pm.C_scaffold_5000227
Length=261

 Score =  350 bits (189),  Expect = 3e-96
 Identities = 211/222 (95%), Gaps = 0/222 (0%)
 Strand=Plus/Plus

Query  1    ATGAATATCACAAAAGCTTATGTGAtttttttCCTTGTAGTGATATTGACAAACTCATTG  60
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    ATGAATATCACAAAAGCTTATGTGATTTTTTTCCTTGTAGTGATATTAACAAACTCATTG  60

Query  61   TCCAACTCTGACGCTTTGGCTTCATCGGTGATTGAGACAACAAAAAATGATGTATGCTCT  120
            |||||||| | || |||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct  61   TCCAACTCCGGCGTTTTGGCTTCATCGGTGATGGAGACATCAAAAAATGATGTATGCTCT  120

Query  121  ACACCATGTACAATAAGGTACGGAACATTTGAATGCTTTCAGGACTGTATCCTCGACCAT  180
            |||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||
Sbjct  121  ACACCATGTACAATAAGGTATGGAACGTTTGAATGCTTTCATGACTGTATCCTCGAGCAT  180

Query  181  TTCAGAGATGGAAATTGTATTAATGGAAGATGTTGTTGCAAA  222
            | ||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TACAGAGATGGAAATTGTATTAATGGAAGATGTTGTTGCAAA  222



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7828593505


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5