BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03935.1
Length=585
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936191 jgi|Araly1|936191|scaffold_500382.1 327 4e-89
Ahg897135 jgi|Araly1|897135|Al_scaffold_0005_1101 246 1e-64
> Ahg936191 jgi|Araly1|936191|scaffold_500382.1
Length=746
Score = 327 bits (177), Expect = 4e-89
Identities = 313/377 (83%), Gaps = 16/377 (4%)
Strand=Plus/Plus
Query 220 ATTTTCACAAATTTAGCTTATGGAGACGAGGTGCAATGGGGTGGTGAGATCGTGAACTCA 279
||||| ||||||||||||||| ||| || ||||||||||||||||||||||||||||||
Sbjct 353 ATTTTTGCAAATTTAGCTTATGCAGATGATGTGCAATGGGGTGGTGAGATCGTGAACTCA 412
Query 280 CAA-AGTTCCGGCCGACATACGACAACCCAGATGGGCTCCGGTCACTTCCCCAATGAAAG 338
|| | |||||| ||||| || ||||| |||||||| |||||||| || || ||||| |
Sbjct 413 -AACATTTCCGGTCGACACACTACAACACAGATGGGATCCGGTCATTTTCCTGATGAAGG 471
Query 339 CTTCGGCAAAGTTAGCTAC-TTGCGCAACTTGGAGATCGTAGATAACAACAT--A-TTCC 394
||||| || |||| ||||| || || ||| | ||||||||||| ||||||| | ||||
Sbjct 472 CTTCGACAGAGTTGGCTACGTT-CGAAACCTAGAGATCGTAGACAACAACAACGAATTCC 530
Query 395 AGCCCGCTCAAGACGTAAAATTAA-AGGCAACCAACCCTAAATTATACGA-TATCAAAGA 452
|||| | ||||||| ||||| ||| || ||||| |||||||||| ||| | ||||||| |
Sbjct 531 AGCCGGTTCAAGACATAAAAGTAATAG-CAACCGACCCTAAATTCTAC-ACTATCAAAAA 588
Query 453 CATGGTTAGTGATGATGGGGGTACTTA-CATTTTCTTTGGAGGGCCCGGGTATAGT-A-- 508
|||| | | |||||| ||||||| || | | |||| ||||||| | ||||||||| |
Sbjct 589 CATGACTGGAGATGATTGGGGTACATATC-TCTTCTATGGAGGGTCAGGGTATAGTCAGA 647
Query 509 TGCATTCAGGAGTCTCTTCTCAAGCATTGAGTTCGttttttttttATTGTAGTTTCATCA 568
| ||||||||||||||||||| |||||||||||||||||| | ||||| |||||||||||
Sbjct 648 TTCATTCAGGAGTCTCTTCTCTAGCATTGAGTTCGTTTTTCTATTATTTTAGTTTCATCA 707
Query 569 TTTGTTTTGTCATTTAG 585
||| |||| ||||||||
Sbjct 708 TTTCTTTTATCATTTAG 724
> Ahg897135 jgi|Araly1|897135|Al_scaffold_0005_1101
Length=264
Score = 246 bits (133), Expect = 1e-64
Identities = 222/264 (84%), Gaps = 9/264 (3%)
Strand=Plus/Plus
Query 141 ATGGAAGGATCAAAAG-CACAGAAACTGGTGGTTGAGTGTGGGATCCAA-CAATTCATTG 198
|||||||||||| || | | |||||| |||| ||||| |||||||||| | ||||||||
Sbjct 1 ATGGAAGGATCAGCAGTC-CGGAAACTAGTGGCTGAGTTTGGGATCCAAGC-ATTCATTG 58
Query 199 GTTGGATACTGGCCAGCCG-AGATTTT-CACAAATTTAGCTTATGGAGACGAGGTGCAAT 256
| ||||| |||||||| | | ||||| || ||| |||||||||| |||||| |||||||
Sbjct 59 ATAGGATATTGGCCAGCTGCA-ATTTTCCA-AAAGTTAGCTTATGCAGACGA-GTGCAAT 115
Query 257 GGGGTGGTGAGATCGTGAACTCACAAAGTTCCGGCCGACATACGACAACCCAGATGGGCT 316
|||||| |||| ||||||| || ||||||| |||||||| |||||||| |||||||| |
Sbjct 116 GGGGTGTTGAGTTCGTGAATTCGCAAAGTTTTGGCCGACACACGACAACACAGATGGGAT 175
Query 317 CCGGTCACTTCCCCAATGAAAGCTTCGGCAAAGTTAGCTACTTGCGCAACTTGGAGATCG 376
| |||| ||| || | ||| ||||| |||||||||||||||| | ||||||||||||||
Sbjct 176 CTGGTCGTTTCTCCGACGAAGGCTTCAGCAAAGTTAGCTACTTTCACAACTTGGAGATCG 235
Query 377 TAGATAACAACATATTCCAGCCCG 400
||||||||||||||||| || |||
Sbjct 236 TAGATAACAACATATTCAAGTCCG 259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21405285429
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5