BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G03960.1

Length=3023
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936193 jgi|Araly1|936193|scaffold_500384.1                        298    2e-79


> Ahg936193 jgi|Araly1|936193|scaffold_500384.1
Length=1183

 Score =  298 bits (161),  Expect = 2e-79
 Identities = 310/381 (81%), Gaps = 14/381 (4%)
 Strand=Plus/Plus

Query  2650  AGGATCAAGAGTCCGAAAACTGGTGGCTGAGTTTGGGATCCAACCATTCATTGGTTGGAT  2709
             |||||||| ||  || |||||||||||||||||| |||||||||||||||||||||||||
Sbjct  726   AGGATCAAAAGAGCGGAAACTGGTGGCTGAGTTTAGGATCCAACCATTCATTGGTTGGAT  785

Query  2710  ATTGGCCAG--GTACAATTTTCCCAAATTTAGCTTATGCAGACGACGTGCAATGGGGTGG  2767
             |||||||||  | | ||||||  ||||||||||||||||||| || || |||||||||||
Sbjct  786   ATTGGCCAGCCG-A-AATTTTTGCAAATTTAGCTTATGCAGATGAGGTCCAATGGGGTGG  843

Query  2768  TGAGGTCGTGAATTCACAAAGTCTTGG-CCGACACACAACAACACAAATGGGATCTGGTC  2826
             |||  |||| || || |||||| |||| ||| ||||| |||||||| ||||| |||||||
Sbjct  844   TGAAATCGTTAACTCGCAAAGT-TTGGGCCGTCACACGACAACACATATGGGTTCTGGTC  902

Query  2827  GCTTCTCCGACGGAGGCTTCAGAAAAGTTAGCTACTTTCACAATTTGGAGATTGTCGATA  2886
              ||||||||| | ||||||| | |||||| ||||||| | ||| ||||||||  | ||||
Sbjct  903   ACTTCTCCGATGAAGGCTTCGGCAAAGTTGGCTACTTCCGCAACTTGGAGATCATAGATA  962

Query  2887  ACAACAGATTCAAGTCCG-TTCGTGATGTAGGAGTACTAGTAGAC-GACC-CTAAGTTCT  2943
             | ||||||||| || ||| |||  ||  ||  ||||  || | || || | | |||||||
Sbjct  963   ATAACAGATTCCAG-CCGGTTCAAGACATAACAGTAAAAGCA-ACCGATCGC-AAGTTCT  1019

Query  2944  ACAACATCAGAG-CGATGTTTAGAGATGATTGGGGTAGTTACATTTTGTATGGAGGGCCA  3002
             || | |||| || | ||||||||||| |||||||||| |||  |||| ||||| ||||| 
Sbjct  1020  ACGATATCAAAGAC-ATGTTTAGAGAAGATTGGGGTACTTATTTTTTCTATGGGGGGCCT  1078

Query  3003  GACCATATGCATTCAGGAGTC  3023
             | ||  || ||||||||||||
Sbjct  1079  GGCCGGATCCATTCAGGAGTC  1099



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 114156464265


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5