BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04020.1
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484303 jgi|Araly1|484303|fgenesh2_kg.5__295__AT2G04020.1 1262 0.0
Ahg346891 jgi|Araly1|346891|fgenesh1_pg.C_scaffold_5000283 652 0.0
> Ahg484303 jgi|Araly1|484303|fgenesh2_kg.5__295__AT2G04020.1
Length=798
Score = 1262 bits (683), Expect = 0.0
Identities = 757/791 (96%), Gaps = 11/791 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTTGCCTTCG-TCTCTAG-AGTCATACCTTCTTTTGATCCTCCTCTCTTTTCTCA 58
||||||||||||| | ||||| | ||||||||||||||||| ||||||| ||||||||||
Sbjct 1 ATGGGTTTGCCTT-GTTCTCT-GAAGTCATACCTTCTTTTGCTCCTCCTGTCTTTTCTCA 58
Query 59 ATGTCTCCACGATATACTCATCGAAGCCATCAAAAGAAGAAGCCGTGCTTTTTGGCGGGA 118
|| |||||| || |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 59 ATTTCTCCATAATTTACTCATCGAAG-C--CAAAAGAAGAAGCCGTGCTTTTTGGCGGGA 115
Query 119 ACTTTCCGGCTTTTTATGTTATTGGAGATTCACTGGTTGATCCAGGAAACAATAACCATC 178
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 116 ACTTTCCGGCTTTTTATGTTATTGGAGATTCATTGGTTGATCCAGGAAACAATAATCATC 175
Query 179 TTCCGACGATGATTAGAGCGAATTATCCACCTTATGGTTCTGACTTTGAAGGAGGCAAAG 238
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TTCCGACAATGATCAGAGCGAATTATCCACCTTATGGTTCTGACTTTGAAGGAGGCAAAG 235
Query 239 CTACCGGACGTTTTAGTAATGGCAAAACAATTGCTGATTACATTGCTATTTATTATAAGC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CTACCGGACGTTTTAGTAATGGCAAAACAATTGCTGATTACATTGCTATTTATTATAAGC 295
Query 299 TTCCTTTGGTTCCTGCTTATTTGGGATTATCTGATGACCGGAAGGACACTATCTCAACTG 358
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 296 TTCCTTTGGTTCCTGCTTATTTGGGATTATCTGAAGACCGGAAGGACACTATCTCAACTG 355
Query 359 GTATGAACTATGCTTCTGCTGGCTGTGGGATTCGTCGTCTCACAGGAAAGATAGCGGGAA 418
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 356 GTATGAACTATGCTTCTGCTGGCTGTGGGATTCTTCGTCTCACAGGAAAGATAGCGGGAA 415
Query 419 AATGTCTATCGTTGAGCAAACAAGTCGATTTGTTCGAGGAAACCATTGAAAAGCATTTGA 478
||||||| ||||||||||||||||||||| ||||||| |||||||| |||||||||||||
Sbjct 416 AATGTCTCTCGTTGAGCAAACAAGTCGATATGTTCGAAGAAACCATCGAAAAGCATTTGA 475
Query 479 AGACGAATTTCAAAACGCCATATGAGTTGAGAGAACACTTGGCTCACTCGTTGTTCATGA 538
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 476 AGACGAATTTCAAAACGCCATATGAGCTGAGAGAACACTTGGCTCACTCGTTGTTCATGA 535
Query 539 CCGTGATTGGGGTTAACGACTATGCATTCTTCTATACTAGGTTAACCGATGCGAATGATT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CCGTGATTGGGGTTAACGACTATGCATTCTTCTATACTAGGTTAACCGATGCGAATGATT 595
Query 599 TCGCAGACGAA-CTTCTTCATAAGTTCTTGaaaaaaaTAGAGAAATTGCATAAGTTAGGA 657
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TCGCAGAC-AAGCTTCTTCATAAGTTCTTGAAAAAAATAGAGAAATTGCATAAGTTAGGA 654
Query 658 GCAAGAAAGTTCTTCATCAACAACATTAAACCATTAGGTTGTTACCCAAATATAGTAGCT 717
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 655 GCAAGAAAGTTCTTCATCAACAACATTAAACCATTAGGATGTTACCCAAATATGGTAGCT 714
Query 718 AAGACGGTACCACGAGGAAGCCG-A-CGAACGTATAAACCTTGCTATAAGCATTTACAAC 775
|||||||||||||| |||||| | | ||||||| ||||||||||||||||||||||||||
Sbjct 715 AAGACGGTACCACGCGGAAGCTGCAACGAACGTGTAAACCTTGCTATAAGCATTTACAAC 774
Query 776 GAAAAGCTTAG 786
|| ||||||||
Sbjct 775 GATAAGCTTAG 785
> Ahg346891 jgi|Araly1|346891|fgenesh1_pg.C_scaffold_5000283
Length=1101
Score = 652 bits (353), Expect = 0.0
Identities = 656/800 (82%), Gaps = 29/800 (4%)
Strand=Plus/Plus
Query 1 ATGGGTTTGCCTTCGTCTCTAGAGTCATACCTTCTTTTGATCCTCCTCTCTTTTCTCAAT 60
|||| ||||| ||| | |||| | |||||| |||||||| || |||||| | |||| |||
Sbjct 1 ATGGATTTGCATTCTTTTCTAAACTCATACTTTCTTTTGGTCTTCCTCTGTCTTCTTAAT 60
Query 61 GTCTCCACGA-TATACTCATCGAAGCCATCAAAAGAAGAAGCCGTGCTTTTTGGCGGGAA 119
| ||||| | || ||||| ||||||||| |||| ||||| | ||||||||||| |||||
Sbjct 61 ATTTCCACCATTA-ACTCAGCGAAGCCATTAAAACAAGAAACGGTGCTTTTTGGTGGGAA 119
Query 120 CTTTCCGGCTTTTTATGTTATTGGAGATTCACTGGTTGATCCAGGAAACAATAACCATCT 179
|||| |||||| |||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct 120 GTTTCAGGCTTTGTATGTTATTGGAGATTCATTGGTTGATTCAGGAAACAATAATTATCT 179
Query 180 TCCGACGATGATTAGAGCGAATTATCCACCTTATGGTTCTGACTTTGAAGGAGGCAAAGC 239
| |||| | | | | | |||||| | ||||||||||||||||||||||||| || |||||
Sbjct 180 TGCGACAAAGGTCAAATCGAATTTTACACCTTATGGTTCTGACTTTGAAGGTGGTAAAGC 239
Query 240 TACCGGACGTTTTAGTAATGGCAAAACAATTGCTGATTACATTGCTATTTATTATAAG-C 298
||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| | |
Sbjct 240 TACCGGACGTTTTAGCAATGGCAAAACAATTGCTGATTATATTGCTATCTATTAT-GGTC 298
Query 299 TTCCTTTGGTTCCTGCTTATTTGGGATTATCTGATGACCG-GAAGGACACTATCT-CAAC 356
||||||||||||||||||| ||||||||||||| || | ||| | | ||| | ||||
Sbjct 299 TTCCTTTGGTTCCTGCTTACATGGGATTATCTGAAGA-AGAAAAGAATAATAT-TACAAC 356
Query 357 TGGTATGAACTATGCTTCTGCTGGCTGTGGGATTCGTCGTCTCACAGGAAAGATAGCGGG 416
|||| | ||||||||||||||| | |||||||||| || | |||||||||| || |||
Sbjct 357 TGGTTTTAACTATGCTTCTGCTAGTTGTGGGATTCTTCCTGACACAGGAAAGTTAATGGG 416
Query 417 AAAATGTCTATCGTTGAGCAAACAAGTCGATTTGTTCGAGGAAACCATTG-AAAAGCATT 475
||||||||| ||||| || ||||||||| ||||| |||| ||||| | |||| ||
Sbjct 417 AAAATGTCTCTCGTTAAGTGTCCAAGTCGATATGTTCAAGGAGACCATCGCAAAA-AATC 475
Query 476 TGAAGACGAATTTCAA-AACGCCATATGAGTTGAG-AGAACACTTGGCTCACTCGTTGTT 533
|||||| ||| ||||| || | | | ||| | | | ||||||||||| | ||||||||
Sbjct 476 TGAAGAAGAACTTCAAGAA-GTC--A-GAGCTCCGTA-AACACTTGGCTGAATCGTTGTT 530
Query 534 CATGACCGTGATTGGGGTTAACGACTATGCATTCTTCTAT-ACTAGGTTAACCGATGCGA 592
||||||| |||||||||||||| || || ||||| | | | || | ||||||||| |
Sbjct 531 TATGACCGCAATTGGGGTTAACGATTACGCGTTCTT-TTTCAATATGACAACCGATGCAA 589
Query 593 ATGA-TTTCGCAGACGAA-CTTCTTCATAAGTT-CTTGaaaaaaaTAGAGAAATTGCATA 649
|||| ||| ||| || || ||||||||| | || ||||| | ||||||||| |||||| |
Sbjct 590 ATGAGTTT-GCAAAC-AAGCTTCTTCATGA-TTACTTGATACAAATAGAGAGATTGCACA 646
Query 650 AGTTAGGAGCAAGAAAGTTCTTCATCAACAACATTAAACCATTAGGTTGTTACCCAAATA 709
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 647 AGTTAGGAGCAAGGAAGTTCTTCATCAACAACATTAAACCATTAGGATGTTACCCAAATA 706
Query 710 TAGTAGCTAAGACGGTACCACGAGGAAGCCG-A-CGAACGTATAAACCTTGCTATAAGCA 767
| ||||||||||| || ||||| |||||| | | ||| | | | |||||||| || ||||
Sbjct 707 TGGTAGCTAAGACCGTGCCACGCGGAAGCTGCAACGATCCTTTGAACCTTGCGATCAGCA 766
Query 768 TTTACAACGAA-AAGCTTAG 786
||| |||| | ||||||||
Sbjct 767 TTTTCAAC-ACTAAGCTTAG 785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29011539837
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5