BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G04020.1 Length=786 Score E Sequences producing significant alignments: (Bits) Value Ahg484303 jgi|Araly1|484303|fgenesh2_kg.5__295__AT2G04020.1 1262 0.0 Ahg346891 jgi|Araly1|346891|fgenesh1_pg.C_scaffold_5000283 652 0.0 > Ahg484303 jgi|Araly1|484303|fgenesh2_kg.5__295__AT2G04020.1 Length=798 Score = 1262 bits (683), Expect = 0.0 Identities = 757/791 (96%), Gaps = 11/791 (1%) Strand=Plus/Plus Query 1 ATGGGTTTGCCTTCG-TCTCTAG-AGTCATACCTTCTTTTGATCCTCCTCTCTTTTCTCA 58 ||||||||||||| | ||||| | ||||||||||||||||| ||||||| |||||||||| Sbjct 1 ATGGGTTTGCCTT-GTTCTCT-GAAGTCATACCTTCTTTTGCTCCTCCTGTCTTTTCTCA 58 Query 59 ATGTCTCCACGATATACTCATCGAAGCCATCAAAAGAAGAAGCCGTGCTTTTTGGCGGGA 118 || |||||| || |||||||||||| | |||||||||||||||||||||||||||||| Sbjct 59 ATTTCTCCATAATTTACTCATCGAAG-C--CAAAAGAAGAAGCCGTGCTTTTTGGCGGGA 115 Query 119 ACTTTCCGGCTTTTTATGTTATTGGAGATTCACTGGTTGATCCAGGAAACAATAACCATC 178 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 116 ACTTTCCGGCTTTTTATGTTATTGGAGATTCATTGGTTGATCCAGGAAACAATAATCATC 175 Query 179 TTCCGACGATGATTAGAGCGAATTATCCACCTTATGGTTCTGACTTTGAAGGAGGCAAAG 238 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 176 TTCCGACAATGATCAGAGCGAATTATCCACCTTATGGTTCTGACTTTGAAGGAGGCAAAG 235 Query 239 CTACCGGACGTTTTAGTAATGGCAAAACAATTGCTGATTACATTGCTATTTATTATAAGC 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236 CTACCGGACGTTTTAGTAATGGCAAAACAATTGCTGATTACATTGCTATTTATTATAAGC 295 Query 299 TTCCTTTGGTTCCTGCTTATTTGGGATTATCTGATGACCGGAAGGACACTATCTCAACTG 358 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 296 TTCCTTTGGTTCCTGCTTATTTGGGATTATCTGAAGACCGGAAGGACACTATCTCAACTG 355 Query 359 GTATGAACTATGCTTCTGCTGGCTGTGGGATTCGTCGTCTCACAGGAAAGATAGCGGGAA 418 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 356 GTATGAACTATGCTTCTGCTGGCTGTGGGATTCTTCGTCTCACAGGAAAGATAGCGGGAA 415 Query 419 AATGTCTATCGTTGAGCAAACAAGTCGATTTGTTCGAGGAAACCATTGAAAAGCATTTGA 478 ||||||| ||||||||||||||||||||| ||||||| |||||||| ||||||||||||| Sbjct 416 AATGTCTCTCGTTGAGCAAACAAGTCGATATGTTCGAAGAAACCATCGAAAAGCATTTGA 475 Query 479 AGACGAATTTCAAAACGCCATATGAGTTGAGAGAACACTTGGCTCACTCGTTGTTCATGA 538 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 476 AGACGAATTTCAAAACGCCATATGAGCTGAGAGAACACTTGGCTCACTCGTTGTTCATGA 535 Query 539 CCGTGATTGGGGTTAACGACTATGCATTCTTCTATACTAGGTTAACCGATGCGAATGATT 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 CCGTGATTGGGGTTAACGACTATGCATTCTTCTATACTAGGTTAACCGATGCGAATGATT 595 Query 599 TCGCAGACGAA-CTTCTTCATAAGTTCTTGaaaaaaaTAGAGAAATTGCATAAGTTAGGA 657 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 596 TCGCAGAC-AAGCTTCTTCATAAGTTCTTGAAAAAAATAGAGAAATTGCATAAGTTAGGA 654 Query 658 GCAAGAAAGTTCTTCATCAACAACATTAAACCATTAGGTTGTTACCCAAATATAGTAGCT 717 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 655 GCAAGAAAGTTCTTCATCAACAACATTAAACCATTAGGATGTTACCCAAATATGGTAGCT 714 Query 718 AAGACGGTACCACGAGGAAGCCG-A-CGAACGTATAAACCTTGCTATAAGCATTTACAAC 775 |||||||||||||| |||||| | | ||||||| |||||||||||||||||||||||||| Sbjct 715 AAGACGGTACCACGCGGAAGCTGCAACGAACGTGTAAACCTTGCTATAAGCATTTACAAC 774 Query 776 GAAAAGCTTAG 786 || |||||||| Sbjct 775 GATAAGCTTAG 785 > Ahg346891 jgi|Araly1|346891|fgenesh1_pg.C_scaffold_5000283 Length=1101 Score = 652 bits (353), Expect = 0.0 Identities = 656/800 (82%), Gaps = 29/800 (4%) Strand=Plus/Plus Query 1 ATGGGTTTGCCTTCGTCTCTAGAGTCATACCTTCTTTTGATCCTCCTCTCTTTTCTCAAT 60 |||| ||||| ||| | |||| | |||||| |||||||| || |||||| | |||| ||| Sbjct 1 ATGGATTTGCATTCTTTTCTAAACTCATACTTTCTTTTGGTCTTCCTCTGTCTTCTTAAT 60 Query 61 GTCTCCACGA-TATACTCATCGAAGCCATCAAAAGAAGAAGCCGTGCTTTTTGGCGGGAA 119 | ||||| | || ||||| ||||||||| |||| ||||| | ||||||||||| ||||| Sbjct 61 ATTTCCACCATTA-ACTCAGCGAAGCCATTAAAACAAGAAACGGTGCTTTTTGGTGGGAA 119 Query 120 CTTTCCGGCTTTTTATGTTATTGGAGATTCACTGGTTGATCCAGGAAACAATAACCATCT 179 |||| |||||| |||||||||||||||||| |||||||| ||||||||||||| |||| Sbjct 120 GTTTCAGGCTTTGTATGTTATTGGAGATTCATTGGTTGATTCAGGAAACAATAATTATCT 179 Query 180 TCCGACGATGATTAGAGCGAATTATCCACCTTATGGTTCTGACTTTGAAGGAGGCAAAGC 239 | |||| | | | | | |||||| | ||||||||||||||||||||||||| || ||||| Sbjct 180 TGCGACAAAGGTCAAATCGAATTTTACACCTTATGGTTCTGACTTTGAAGGTGGTAAAGC 239 Query 240 TACCGGACGTTTTAGTAATGGCAAAACAATTGCTGATTACATTGCTATTTATTATAAG-C 298 ||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| | | Sbjct 240 TACCGGACGTTTTAGCAATGGCAAAACAATTGCTGATTATATTGCTATCTATTAT-GGTC 298 Query 299 TTCCTTTGGTTCCTGCTTATTTGGGATTATCTGATGACCG-GAAGGACACTATCT-CAAC 356 ||||||||||||||||||| ||||||||||||| || | ||| | | ||| | |||| Sbjct 299 TTCCTTTGGTTCCTGCTTACATGGGATTATCTGAAGA-AGAAAAGAATAATAT-TACAAC 356 Query 357 TGGTATGAACTATGCTTCTGCTGGCTGTGGGATTCGTCGTCTCACAGGAAAGATAGCGGG 416 |||| | ||||||||||||||| | |||||||||| || | |||||||||| || ||| Sbjct 357 TGGTTTTAACTATGCTTCTGCTAGTTGTGGGATTCTTCCTGACACAGGAAAGTTAATGGG 416 Query 417 AAAATGTCTATCGTTGAGCAAACAAGTCGATTTGTTCGAGGAAACCATTG-AAAAGCATT 475 ||||||||| ||||| || ||||||||| ||||| |||| ||||| | |||| || Sbjct 417 AAAATGTCTCTCGTTAAGTGTCCAAGTCGATATGTTCAAGGAGACCATCGCAAAA-AATC 475 Query 476 TGAAGACGAATTTCAA-AACGCCATATGAGTTGAG-AGAACACTTGGCTCACTCGTTGTT 533 |||||| ||| ||||| || | | | ||| | | | ||||||||||| | |||||||| Sbjct 476 TGAAGAAGAACTTCAAGAA-GTC--A-GAGCTCCGTA-AACACTTGGCTGAATCGTTGTT 530 Query 534 CATGACCGTGATTGGGGTTAACGACTATGCATTCTTCTAT-ACTAGGTTAACCGATGCGA 592 ||||||| |||||||||||||| || || ||||| | | | || | ||||||||| | Sbjct 531 TATGACCGCAATTGGGGTTAACGATTACGCGTTCTT-TTTCAATATGACAACCGATGCAA 589 Query 593 ATGA-TTTCGCAGACGAA-CTTCTTCATAAGTT-CTTGaaaaaaaTAGAGAAATTGCATA 649 |||| ||| ||| || || ||||||||| | || ||||| | ||||||||| |||||| | Sbjct 590 ATGAGTTT-GCAAAC-AAGCTTCTTCATGA-TTACTTGATACAAATAGAGAGATTGCACA 646 Query 650 AGTTAGGAGCAAGAAAGTTCTTCATCAACAACATTAAACCATTAGGTTGTTACCCAAATA 709 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 647 AGTTAGGAGCAAGGAAGTTCTTCATCAACAACATTAAACCATTAGGATGTTACCCAAATA 706 Query 710 TAGTAGCTAAGACGGTACCACGAGGAAGCCG-A-CGAACGTATAAACCTTGCTATAAGCA 767 | ||||||||||| || ||||| |||||| | | ||| | | | |||||||| || |||| Sbjct 707 TGGTAGCTAAGACCGTGCCACGCGGAAGCTGCAACGATCCTTTGAACCTTGCGATCAGCA 766 Query 768 TTTACAACGAA-AAGCTTAG 786 ||| |||| | |||||||| Sbjct 767 TTTTCAAC-ACTAAGCTTAG 785 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29011539837 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5