BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G04025.1

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg896372 jgi|Araly1|896372|Al_scaffold_0005_338                     457    4e-128


> Ahg896372 jgi|Araly1|896372|Al_scaffold_0005_338
Length=336

 Score =  457 bits (247),  Expect = 4e-128
 Identities = 310/339 (91%), Gaps = 9/339 (3%)
 Strand=Plus/Plus

Query  57   ATGACTACTTTGTCAAAGATTCTATGTGTGTTGATCATTCTTCTTTTATGTTTCTCCTTT  116
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  1    ATGACTACTTTGTCAAAGATTCTATGTGTGTTGATCGTTCTTCTTTTATGTTTCTCCTTT  60

Query  117  CGCTATTCACTTCATGAAGATGGGAATCAACAGTCAAGCCGTGACTTCGTTTCAACTGCT  176
            || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct  61   CGATATTCACTTCATGAAGATGGGAATCAACAGTCAAGCCATGACTTCGTTTCAACTGCC  120

Query  177  AA-G-G-CGATTAAATATGGTGATGTGATGAAA-AAGATGATACGAGGACGAAAACTGAT  232
            || | | ||| | |||||||||||||||| ||| ||||||||| ||||| ||||| ||||
Sbjct  121  AAGGCGACGACTGAATATGGTGATGTGAT-AAAGAAGATGATAGGAGGAAGAAAATTGAT  179

Query  233  GATGGCAAGTGGCgaaa-aagaagaagctgaaacga-agatgaagagaggaaatagagag  290
            ||| |||| |||  ||| |||||||||  ||||||| | ||||||||||| |||||||||
Sbjct  180  GATAGCAAATGG-AAAAGAAGAAGAAGAAGAAACGACA-ATGAAGAGAGGCAATAGAGAG  237

Query  291  acagagagaaaCTCAAGCAAAAGTGTTGAAGAAGATGGACTTGTAGCTTACACTGCTGAT  350
            |||||||||||  ||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct  238  ACAGAGAGAAAAGCAAGCAAAAGTGTTGAAGAGGATGGACTCGTTGCTTACACTGCTGAT  297

Query  351  TATTGGAGAGCTAAGCATCATCCTCCCAAGAACAACTAA  389
            |||||||||||||||||||||||||||||||||||||||
Sbjct  298  TATTGGAGAGCTAAGCATCATCCTCCCAAGAACAACTAA  336



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18581771843


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5