BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G04030.1 Length=2680 Score E Sequences producing significant alignments: (Bits) Value Ahg484305 jgi|Araly1|484305|fgenesh2_kg.5__297__AT2G04030.1 4296 0.0 > Ahg484305 jgi|Araly1|484305|fgenesh2_kg.5__297__AT2G04030.1 Length=2664 Score = 4296 bits (2326), Expect = 0.0 Identities = 2567/2679 (96%), Gaps = 34/2679 (1%) Strand=Plus/Plus Query 13 TCACTCTCCTTAAACCTTTAATAGGGTTTTTAGGTTACTCTTTGTT---C-A--ACTACT 66 ||||||||||||||||||| |||||||||||||||||||||||||| | | |||||| Sbjct 1 TCACTCTCCTTAAACCTTTTATAGGGTTTTTAGGTTACTCTTTGTTCAACTACTACTACT 60 Query 67 ACAAACTCTTTTCTCTTTAGAGATTGAGAGATTGTaaaaaaaTCTCAAATCTTTTCCTTC 126 |||||||||| |||||||||||||||||||||| | | |||||||||||| |||||||| Sbjct 61 ACAAACTCTTCTCTCTTTAGAGATTGAGAGATT-T-GACAAATCTCAAATC-TTTCCTTC 117 Query 127 ACAACTTTCAAATCTAATGGCTCCTGCTTTGAGTAGAAGTCTCTACACATCTCCTTTGAC 186 ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 118 ACAACTTTC-AATCTAATGGCTCCTGCTTTGAGTAGAAGTCTCTACACAACTCCTTTGAC 176 Query 187 TTCAGTTCCAATCACTCCTGTCTCTTCTCGTCTCTCTCATCTGAGAAGCTCGTTTCTCCC 246 ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || Sbjct 177 TTCAGTTCCAATCACTCCTCTCTCTTCTCGTCTCTCTCATCTGCGAAGCTCGTTTCTGCC 236 Query 247 ACACGGCGGCGCTTTAAGAACCGGCGTTTCGTGTAGCTGGAATCTCGA-AAAGAGATGTA 305 | |||||||||| ||||||||| | |||||||||| ||||||||||| ||| ||||||| Sbjct 237 TCGCGGCGGCGCTCTAAGAACCGACCTTTCGTGTAGTTGGAATCTCGAGAAA-AGATGTA 295 Query 306 ACCGATTCGCCGTGAAGTGTGACGCCGCCGTGGCGGAGAAAGAGACCACTGAAGAAGGGT 365 | ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 296 ATCGATTCGCCGTGAAGTGTGACGCCGCCGTGGCGGAGAAAGAAACGACTGAAGAAGGGT 355 Query 366 CAGGTGAGAAGTTTGAGTACCAAGCTGAGGTTAGTAGATTGTTGGATTTGATTGTTCATA 425 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 CTGGTGAGAAGTTTGAGTACCAAGCTGAGGTTAGTAGATTGTTGGATTTGATTGTTCATA 415 Query 426 GCTTATACAGTCACAAGGAGGTGTTTCTCAGGGAGCTTGTAAGTAATGCAAGTGATGCTT 485 |||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| Sbjct 416 GCTTATACAGTCACAAGGAGGTATTTCTCAGAGAGCTTGTGAGTAATGCAAGTGATGCTT 475 Query 486 TGGATAAGCTGAGGTTCTTGAGTGTAACAGAGCCTTCTTTGCTTGGAGATGGTGGAGATC 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 476 TGGATAAGCTGAGGTTCTTGAGTGTAACAGAGCCTTCTTTGCTTGGAGATGGTGGAGATC 535 Query 546 TTGAGATTAGGATTAAGCCTGATCCTGATAACGGCACCATCACCATAACTGATACTGGTA 605 ||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||| Sbjct 536 TTGAGATTAGGATTAAGCCTGATCCTGATAACGGCACTATTACCATTACCGATACTGGTA 595 Query 606 TTGGAATGACAAAGGAAGAACTTATTGATTGCCTTGGAACTATTGCTCAAAGTGGTACTT 665 ||||||||||||||||||||||||| || || |||||||||||||||||||||||||||| Sbjct 596 TTGGAATGACAAAGGAAGAACTTATAGACTGTCTTGGAACTATTGCTCAAAGTGGTACTT 655 Query 666 CGAAATTCTTGAAGGCTCTAAAGGAAAACAAGGACCTTGGTGCTGACAACGGTTTGATCG 725 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 656 CGAAATTCTTGAAGGCTCTTAAGGAAAACAAAGACCTTGGTGCTGACAACGGTTTGATCG 715 Query 726 GACAGTTTGGTGTTGGGTTTTACTCTGCTTTCTTAGTTGCTGAGAAGGTTGTTGTGTCCA 785 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 716 GACAGTTTGGTGTTGGGTTTTACTCTGCTTTCTTAGTTGCTGAAAAGGTTGTTGTGTCTA 775 Query 786 CCAAAAGCCCCAAATCTGACAAGCAATATGTTTGGGAATCGGTTGCCGATAGTAGCTCGT 845 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 CCAAAAGCCCCAAGTCTGACAAGCAATATGTTTGGGAATCGGTTGCCGATAGTAGCTCGT 835 Query 846 ATCTGATCAGAGAAGAAACAGACCCTGATAACATTCTACGTCGTGGAACACAAATCACCT 905 | |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 836 ACCTGATCAGAGAAGAAACAGACCCTGAAAACATTCTACGCCGTGGAACACAAATCACCT 895 Query 906 TGTATCTGAGGGAGGATGATAAATACGAATTTGCGGAGTCTACAAGGATCAAGAACCTCG 965 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| | Sbjct 896 TGTATCTGAGGGAGGATGATAAATATGAATTTGCGGAGTCTACGAGGATCAAGAACCTTG 955 Query 966 TGAAGAATTACTCTCAGTTCGTTGGGTTTCCTATCTATACATGGCAGGAGAAATCAAGGA 1025 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 956 TGAAGAATTACTCTCAGTTCGTTGGGTTTCCTATCTATACATGGCAGGAGAAATCAAGGA 1015 Query 1026 CTATAGAGGTCGAAGAGGACGAACCAGTTAAGGAAGGAGAAGAGGGTGAGCCAAAGAAAA 1085 |||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 1016 CTATAGAGGTTGAAGAGGAAGAACCAGCTAAGGAAGGAGAAGAGGGTGAGCCAAAGAAAA 1075 Query 1086 AGAAGACCACTAAAACTGAGAAGTATTGGGATTGGGAACTAGCCAACGAGACCAAACCGC 1145 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 1076 AGAAGACCACTAAAACTGAGAAGTATTGGGATTGGGAACTAGCCAATGAGACAAAACCGC 1135 Query 1146 TATGGATGCGCAATTCGAAGGAAGTGGAAAAAGGAGAGTACAATGAGTTCTACAAAAAGG 1205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1136 TATGGATGCGCAATTCGAAGGAAGTGGAAAAAGGAGAGTACAATGAGTTCTACAAAAAGG 1195 Query 1206 CTTTCAATGAGTTCTTGGATCCACTTGCTCACACACACTTCACAACTGAGGGTGAGGTTG 1265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1196 CTTTCAATGAGTTCTTGGATCCACTTGCTCACACACACTTCACAACTGAGGGTGAGGTTG 1255 Query 1266 AGTTCAGGAGCATTTTGTACATCCCTGGGATGGGTCCTCTTAACAATGAAGATGTTACAA 1325 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1256 AGTTCAGGAGTATTTTGTACATCCCTGGGATGGGTCCTCTTAACAATGAGGATGTTACAA 1315 Query 1326 ACCCGAAAACAAAGAACATTCGTCTCTACGTGAAGCGTGTGTTTATCTCTGACGATTTTG 1385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1316 ACCCGAAAACAAAGAACATTCGTCTCTACGTGAAGCGTGTGTTTATCTCTGACGATTTTG 1375 Query 1386 ATGGAGAGCTTTTCCCGAGATATCTGAGCTTTGTGAAGGGAGTTGTGGACTCTGATGATC 1445 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 1376 ATGGAGAGCTTTTCCCGAGATATTTGAGCTTTGTGAAGGGAGTAGTGGACTCTGATGATC 1435 Query 1446 TTCCTCTTAATGTTTCTCGTGAAATTCTCCAAGAAAGCAGAATTGTAAGAATCATGAGAA 1505 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1436 TTCCTCTTAATGTTTCCCGTGAAATTCTCCAAGAAAGCAGAATTGTAAGAATCATGAGAA 1495 Query 1506 AGAGGCTCATTAGAAAAACCTTTGACATGATACAAGAAATCTCTGAGAGTGAAAACAAAG 1565 |||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1496 AGAGGCTCATAAGGAAAACCTTTGACATGATACAAGAAATCTCTGAAAGTGAAAACAAAG 1555 Query 1566 AGGATTACAAGAAATTCTGGGAGAACTTTGGTAGATTCCTTAAATTGGGTTGTATTGAAG 1625 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1556 AGGATTACAAGAAATTCTGGGAGAACTTTGGTAGGTTCCTTAAATTGGGTTGTATTGAAG 1615 Query 1626 ACACCGGTAACCACAAGCGTATCACACCGCTACTTAGATTCTTCAGTTCCAAGAATGAAG 1685 |||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| Sbjct 1616 ACACCGGTAACCACAAGCGTATTACACCGCTACTCAGATTCTACAGTTCCAAGAATGAAG 1675 Query 1686 AGGAATTGACAAGCTTGGATGATTATATCGAGAACATGGGAGAGAACCAAAAGGCGATCT 1745 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1676 AAGAATTGACAAGCTTGGATGATTATATCGAGAACATGGGAGAGAACCAAAAGGCGATCT 1735 Query 1746 ACTACCTCGCAACTGATAGTCTTAAAAGTGCCAAGTCTGCCCCTTTCTTGGAGAAACTAA 1805 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1736 ACTACCTTGCCACTGATAGTCTTAAAAGTGCCAAGTCTGCCCCTTTCTTGGAGAAATTAA 1795 Query 1806 TCCAAAAAGATATCGAGGTTCTATATTTGGTTGAACCAATCGATGAAGTTGCTATTCAGA 1865 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 1796 TCCAAAAAGATATCGAGGTTCTATACTTGGTTGAACCAATCGATGAAGTTGCGATTCAGA 1855 Query 1866 ATTTGCAAACCTACAAAGAAAAGAAATTCGTTGATATCAGTAAAGAAGATTTGGAACTCG 1925 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1856 ATTTGCAAACCTACAAAGAAAAGAAATTCGTTGATATCAGCAAAGAAGATTTGGAACTCG 1915 Query 1926 GAGATGAAGATGAAGTAAAGGACAGGGAAGCGAAACAAGAGTTTAACCTTCTCTGTGACT 1985 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1916 GAGATGAAGATGAAGTAAAGGACAGGGAAGCTAAACAAGAGTTTAACCTTCTCTGTGACT 1975 Query 1986 GGATAAAACAGCAGCTCGGTGACAAAGTTGCAAAAGTCCAAGTCTCAAACCGTTTGAGCT 2045 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1976 GGATAAAACAGCAGCTCGGTGACAAAGTTGCAAAAGTCCAAGTCTCAAATCGTTTGAGCT 2035 Query 2046 CTTCTCCTTGTGTGCTTGTCTCTGGCAAATTCGGGTGGTCAGCTAATATGGAAAGGCTAA 2105 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 2036 CTTCTCCTTGTGTGCTTGTTTCAGGCAAATTCGGGTGGTCAGCTAATATGGAAAGGCTAA 2095 Query 2106 TGAAGGCACAGGCTCTTGGAGACACTTCAAGCCTGGAGTTCATGAGAGGTAGGAGAATAC 2165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2096 TGAAGGCACAGGCTCTTGGAGACACTTCAAGCCTGGAGTTCATGAGAGGTAGGAGAATAC 2155 Query 2166 TAGAGATCAATCCAGATCATCCCATCATCAAAGACTTGAACGCTGCTTGTAAGAATGCAC 2225 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2156 TAGAGATCAATCCAGATCATCCCATCATCAAAGACTTGAACGCTGCTTGCAAGAATGCAC 2215 Query 2226 CAGAGAGCACTGAAGCAACAAGAGTGGTCGATCTCTTGTATGACACTGCTATAATATCAA 2285 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2216 CAGAGAGCACTGAAGCAACAAGAGTGGTCGATCTCTTGTATGACACTGCTATAATCTCAA 2275 Query 2286 GTGGATTCACTCCTGATAGCCCGGCCGAGCTCGGGAACAAGATATATGAGATGATGGCAA 2345 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2276 GTGGATTCACTCCTGATAGCCCGGCCGAGCTCGGGAACAAGATTTATGAGATGATGGCAA 2335 Query 2346 TGGCGGTTGGAGGAAGATGGGGCAGAGTTGAAGAAGAAGAAGAAAGCTCGACTGTGAATG 2405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2336 TGGCGGTTGGAGGAAGATGGGGCAGAGTTGAAGAAGAAGAAGAAAGCTCGACTGTGAATG 2395 Query 2406 AAGGAGATGACAAAAGCGGAGAAACAGAGGTAGTTGAACCATCTGAAGTGAGGGCAGAGA 2465 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 2396 AAGGAGATGACAAAAGTGGAGAAACAGAGGTAGTTGAACCATCTGAAGTTAGGGCAGAGA 2455 Query 2466 GTGATCCTTGGCAAGATTGATCCTTTTTTACCTTCTTTTGTTTGCAGTGAtttttttttG 2525 ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | Sbjct 2456 GTGATCCTTGGCAAGATTGATCCTTTTTTACCTTCTTTTGTTTCCAGTGAATTTTTTT-G 2514 Query 2526 ACAGAA--CGCTTTATCTT-TCCATTAGCAGTATCATGGGCCTAA-----T--G-AAAGC 2574 ||| || ||||||||||| | ||||||||||||||||||||||| | | ||||| Sbjct 2515 ACACAAAACGCTTTATCTTCTTCATTAGCAGTATCATGGGCCTAACCGCCTAAGGAAAGC 2574 Query 2575 CCATAATTAAATCACGCGTGAACGAGATTTATCCAATACAGTATTTGTAGtttttttttG 2634 |||||||||||||| |||||||||||||||||||| | || ||||||| |||||| Sbjct 2575 CCATAATTAAATCA----TGAACGAGATTTATCCAATA---T-TT-GTAGTTTGTTTTTG 2625 Query 2635 -ATAATTAAAATAATTTTAGAGAATTTACACaaaaaaaG 2672 ||||||||||||||||||||||| |||||||||||||| Sbjct 2626 GATAATTAAAATAATTTTAGAGAAATTACACAAAAAAAG 2664 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 101091510230 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5