BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04030.1
Length=2680
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484305 jgi|Araly1|484305|fgenesh2_kg.5__297__AT2G04030.1 4296 0.0
> Ahg484305 jgi|Araly1|484305|fgenesh2_kg.5__297__AT2G04030.1
Length=2664
Score = 4296 bits (2326), Expect = 0.0
Identities = 2567/2679 (96%), Gaps = 34/2679 (1%)
Strand=Plus/Plus
Query 13 TCACTCTCCTTAAACCTTTAATAGGGTTTTTAGGTTACTCTTTGTT---C-A--ACTACT 66
||||||||||||||||||| |||||||||||||||||||||||||| | | ||||||
Sbjct 1 TCACTCTCCTTAAACCTTTTATAGGGTTTTTAGGTTACTCTTTGTTCAACTACTACTACT 60
Query 67 ACAAACTCTTTTCTCTTTAGAGATTGAGAGATTGTaaaaaaaTCTCAAATCTTTTCCTTC 126
|||||||||| |||||||||||||||||||||| | | |||||||||||| ||||||||
Sbjct 61 ACAAACTCTTCTCTCTTTAGAGATTGAGAGATT-T-GACAAATCTCAAATC-TTTCCTTC 117
Query 127 ACAACTTTCAAATCTAATGGCTCCTGCTTTGAGTAGAAGTCTCTACACATCTCCTTTGAC 186
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 118 ACAACTTTC-AATCTAATGGCTCCTGCTTTGAGTAGAAGTCTCTACACAACTCCTTTGAC 176
Query 187 TTCAGTTCCAATCACTCCTGTCTCTTCTCGTCTCTCTCATCTGAGAAGCTCGTTTCTCCC 246
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||
Sbjct 177 TTCAGTTCCAATCACTCCTCTCTCTTCTCGTCTCTCTCATCTGCGAAGCTCGTTTCTGCC 236
Query 247 ACACGGCGGCGCTTTAAGAACCGGCGTTTCGTGTAGCTGGAATCTCGA-AAAGAGATGTA 305
| |||||||||| ||||||||| | |||||||||| ||||||||||| ||| |||||||
Sbjct 237 TCGCGGCGGCGCTCTAAGAACCGACCTTTCGTGTAGTTGGAATCTCGAGAAA-AGATGTA 295
Query 306 ACCGATTCGCCGTGAAGTGTGACGCCGCCGTGGCGGAGAAAGAGACCACTGAAGAAGGGT 365
| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 296 ATCGATTCGCCGTGAAGTGTGACGCCGCCGTGGCGGAGAAAGAAACGACTGAAGAAGGGT 355
Query 366 CAGGTGAGAAGTTTGAGTACCAAGCTGAGGTTAGTAGATTGTTGGATTTGATTGTTCATA 425
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CTGGTGAGAAGTTTGAGTACCAAGCTGAGGTTAGTAGATTGTTGGATTTGATTGTTCATA 415
Query 426 GCTTATACAGTCACAAGGAGGTGTTTCTCAGGGAGCTTGTAAGTAATGCAAGTGATGCTT 485
|||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 416 GCTTATACAGTCACAAGGAGGTATTTCTCAGAGAGCTTGTGAGTAATGCAAGTGATGCTT 475
Query 486 TGGATAAGCTGAGGTTCTTGAGTGTAACAGAGCCTTCTTTGCTTGGAGATGGTGGAGATC 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TGGATAAGCTGAGGTTCTTGAGTGTAACAGAGCCTTCTTTGCTTGGAGATGGTGGAGATC 535
Query 546 TTGAGATTAGGATTAAGCCTGATCCTGATAACGGCACCATCACCATAACTGATACTGGTA 605
||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||
Sbjct 536 TTGAGATTAGGATTAAGCCTGATCCTGATAACGGCACTATTACCATTACCGATACTGGTA 595
Query 606 TTGGAATGACAAAGGAAGAACTTATTGATTGCCTTGGAACTATTGCTCAAAGTGGTACTT 665
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 596 TTGGAATGACAAAGGAAGAACTTATAGACTGTCTTGGAACTATTGCTCAAAGTGGTACTT 655
Query 666 CGAAATTCTTGAAGGCTCTAAAGGAAAACAAGGACCTTGGTGCTGACAACGGTTTGATCG 725
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 656 CGAAATTCTTGAAGGCTCTTAAGGAAAACAAAGACCTTGGTGCTGACAACGGTTTGATCG 715
Query 726 GACAGTTTGGTGTTGGGTTTTACTCTGCTTTCTTAGTTGCTGAGAAGGTTGTTGTGTCCA 785
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 716 GACAGTTTGGTGTTGGGTTTTACTCTGCTTTCTTAGTTGCTGAAAAGGTTGTTGTGTCTA 775
Query 786 CCAAAAGCCCCAAATCTGACAAGCAATATGTTTGGGAATCGGTTGCCGATAGTAGCTCGT 845
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CCAAAAGCCCCAAGTCTGACAAGCAATATGTTTGGGAATCGGTTGCCGATAGTAGCTCGT 835
Query 846 ATCTGATCAGAGAAGAAACAGACCCTGATAACATTCTACGTCGTGGAACACAAATCACCT 905
| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 836 ACCTGATCAGAGAAGAAACAGACCCTGAAAACATTCTACGCCGTGGAACACAAATCACCT 895
Query 906 TGTATCTGAGGGAGGATGATAAATACGAATTTGCGGAGTCTACAAGGATCAAGAACCTCG 965
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 896 TGTATCTGAGGGAGGATGATAAATATGAATTTGCGGAGTCTACGAGGATCAAGAACCTTG 955
Query 966 TGAAGAATTACTCTCAGTTCGTTGGGTTTCCTATCTATACATGGCAGGAGAAATCAAGGA 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TGAAGAATTACTCTCAGTTCGTTGGGTTTCCTATCTATACATGGCAGGAGAAATCAAGGA 1015
Query 1026 CTATAGAGGTCGAAGAGGACGAACCAGTTAAGGAAGGAGAAGAGGGTGAGCCAAAGAAAA 1085
|||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1016 CTATAGAGGTTGAAGAGGAAGAACCAGCTAAGGAAGGAGAAGAGGGTGAGCCAAAGAAAA 1075
Query 1086 AGAAGACCACTAAAACTGAGAAGTATTGGGATTGGGAACTAGCCAACGAGACCAAACCGC 1145
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1076 AGAAGACCACTAAAACTGAGAAGTATTGGGATTGGGAACTAGCCAATGAGACAAAACCGC 1135
Query 1146 TATGGATGCGCAATTCGAAGGAAGTGGAAAAAGGAGAGTACAATGAGTTCTACAAAAAGG 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TATGGATGCGCAATTCGAAGGAAGTGGAAAAAGGAGAGTACAATGAGTTCTACAAAAAGG 1195
Query 1206 CTTTCAATGAGTTCTTGGATCCACTTGCTCACACACACTTCACAACTGAGGGTGAGGTTG 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 CTTTCAATGAGTTCTTGGATCCACTTGCTCACACACACTTCACAACTGAGGGTGAGGTTG 1255
Query 1266 AGTTCAGGAGCATTTTGTACATCCCTGGGATGGGTCCTCTTAACAATGAAGATGTTACAA 1325
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1256 AGTTCAGGAGTATTTTGTACATCCCTGGGATGGGTCCTCTTAACAATGAGGATGTTACAA 1315
Query 1326 ACCCGAAAACAAAGAACATTCGTCTCTACGTGAAGCGTGTGTTTATCTCTGACGATTTTG 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 ACCCGAAAACAAAGAACATTCGTCTCTACGTGAAGCGTGTGTTTATCTCTGACGATTTTG 1375
Query 1386 ATGGAGAGCTTTTCCCGAGATATCTGAGCTTTGTGAAGGGAGTTGTGGACTCTGATGATC 1445
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1376 ATGGAGAGCTTTTCCCGAGATATTTGAGCTTTGTGAAGGGAGTAGTGGACTCTGATGATC 1435
Query 1446 TTCCTCTTAATGTTTCTCGTGAAATTCTCCAAGAAAGCAGAATTGTAAGAATCATGAGAA 1505
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TTCCTCTTAATGTTTCCCGTGAAATTCTCCAAGAAAGCAGAATTGTAAGAATCATGAGAA 1495
Query 1506 AGAGGCTCATTAGAAAAACCTTTGACATGATACAAGAAATCTCTGAGAGTGAAAACAAAG 1565
|||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1496 AGAGGCTCATAAGGAAAACCTTTGACATGATACAAGAAATCTCTGAAAGTGAAAACAAAG 1555
Query 1566 AGGATTACAAGAAATTCTGGGAGAACTTTGGTAGATTCCTTAAATTGGGTTGTATTGAAG 1625
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1556 AGGATTACAAGAAATTCTGGGAGAACTTTGGTAGGTTCCTTAAATTGGGTTGTATTGAAG 1615
Query 1626 ACACCGGTAACCACAAGCGTATCACACCGCTACTTAGATTCTTCAGTTCCAAGAATGAAG 1685
|||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||
Sbjct 1616 ACACCGGTAACCACAAGCGTATTACACCGCTACTCAGATTCTACAGTTCCAAGAATGAAG 1675
Query 1686 AGGAATTGACAAGCTTGGATGATTATATCGAGAACATGGGAGAGAACCAAAAGGCGATCT 1745
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 AAGAATTGACAAGCTTGGATGATTATATCGAGAACATGGGAGAGAACCAAAAGGCGATCT 1735
Query 1746 ACTACCTCGCAACTGATAGTCTTAAAAGTGCCAAGTCTGCCCCTTTCTTGGAGAAACTAA 1805
||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1736 ACTACCTTGCCACTGATAGTCTTAAAAGTGCCAAGTCTGCCCCTTTCTTGGAGAAATTAA 1795
Query 1806 TCCAAAAAGATATCGAGGTTCTATATTTGGTTGAACCAATCGATGAAGTTGCTATTCAGA 1865
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1796 TCCAAAAAGATATCGAGGTTCTATACTTGGTTGAACCAATCGATGAAGTTGCGATTCAGA 1855
Query 1866 ATTTGCAAACCTACAAAGAAAAGAAATTCGTTGATATCAGTAAAGAAGATTTGGAACTCG 1925
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1856 ATTTGCAAACCTACAAAGAAAAGAAATTCGTTGATATCAGCAAAGAAGATTTGGAACTCG 1915
Query 1926 GAGATGAAGATGAAGTAAAGGACAGGGAAGCGAAACAAGAGTTTAACCTTCTCTGTGACT 1985
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1916 GAGATGAAGATGAAGTAAAGGACAGGGAAGCTAAACAAGAGTTTAACCTTCTCTGTGACT 1975
Query 1986 GGATAAAACAGCAGCTCGGTGACAAAGTTGCAAAAGTCCAAGTCTCAAACCGTTTGAGCT 2045
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1976 GGATAAAACAGCAGCTCGGTGACAAAGTTGCAAAAGTCCAAGTCTCAAATCGTTTGAGCT 2035
Query 2046 CTTCTCCTTGTGTGCTTGTCTCTGGCAAATTCGGGTGGTCAGCTAATATGGAAAGGCTAA 2105
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2036 CTTCTCCTTGTGTGCTTGTTTCAGGCAAATTCGGGTGGTCAGCTAATATGGAAAGGCTAA 2095
Query 2106 TGAAGGCACAGGCTCTTGGAGACACTTCAAGCCTGGAGTTCATGAGAGGTAGGAGAATAC 2165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2096 TGAAGGCACAGGCTCTTGGAGACACTTCAAGCCTGGAGTTCATGAGAGGTAGGAGAATAC 2155
Query 2166 TAGAGATCAATCCAGATCATCCCATCATCAAAGACTTGAACGCTGCTTGTAAGAATGCAC 2225
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2156 TAGAGATCAATCCAGATCATCCCATCATCAAAGACTTGAACGCTGCTTGCAAGAATGCAC 2215
Query 2226 CAGAGAGCACTGAAGCAACAAGAGTGGTCGATCTCTTGTATGACACTGCTATAATATCAA 2285
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2216 CAGAGAGCACTGAAGCAACAAGAGTGGTCGATCTCTTGTATGACACTGCTATAATCTCAA 2275
Query 2286 GTGGATTCACTCCTGATAGCCCGGCCGAGCTCGGGAACAAGATATATGAGATGATGGCAA 2345
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2276 GTGGATTCACTCCTGATAGCCCGGCCGAGCTCGGGAACAAGATTTATGAGATGATGGCAA 2335
Query 2346 TGGCGGTTGGAGGAAGATGGGGCAGAGTTGAAGAAGAAGAAGAAAGCTCGACTGTGAATG 2405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2336 TGGCGGTTGGAGGAAGATGGGGCAGAGTTGAAGAAGAAGAAGAAAGCTCGACTGTGAATG 2395
Query 2406 AAGGAGATGACAAAAGCGGAGAAACAGAGGTAGTTGAACCATCTGAAGTGAGGGCAGAGA 2465
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2396 AAGGAGATGACAAAAGTGGAGAAACAGAGGTAGTTGAACCATCTGAAGTTAGGGCAGAGA 2455
Query 2466 GTGATCCTTGGCAAGATTGATCCTTTTTTACCTTCTTTTGTTTGCAGTGAtttttttttG 2525
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 2456 GTGATCCTTGGCAAGATTGATCCTTTTTTACCTTCTTTTGTTTCCAGTGAATTTTTTT-G 2514
Query 2526 ACAGAA--CGCTTTATCTT-TCCATTAGCAGTATCATGGGCCTAA-----T--G-AAAGC 2574
||| || ||||||||||| | ||||||||||||||||||||||| | | |||||
Sbjct 2515 ACACAAAACGCTTTATCTTCTTCATTAGCAGTATCATGGGCCTAACCGCCTAAGGAAAGC 2574
Query 2575 CCATAATTAAATCACGCGTGAACGAGATTTATCCAATACAGTATTTGTAGtttttttttG 2634
|||||||||||||| |||||||||||||||||||| | || ||||||| ||||||
Sbjct 2575 CCATAATTAAATCA----TGAACGAGATTTATCCAATA---T-TT-GTAGTTTGTTTTTG 2625
Query 2635 -ATAATTAAAATAATTTTAGAGAATTTACACaaaaaaaG 2672
||||||||||||||||||||||| ||||||||||||||
Sbjct 2626 GATAATTAAAATAATTTTAGAGAAATTACACAAAAAAAG 2664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101091510230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5