BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04031.1
Length=620
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936212 jgi|Araly1|936212|scaffold_500403.1 462 1e-129
Ahg936213 jgi|Araly1|936213|scaffold_500404.1 459 1e-128
Ahg936215 jgi|Araly1|936215|scaffold_500406.1 448 3e-125
Ahg936209 jgi|Araly1|936209|scaffold_500400.1 420 7e-117
Ahg322690 jgi|Araly1|322690|fgenesh1_pm.C_scaffold_5000234 372 2e-102
Ahg928921 jgi|Araly1|928921|scaffold_301378.1 300 9e-81
Ahg913770 jgi|Araly1|913770|Al_scaffold_0001_4024 255 2e-67
> Ahg936212 jgi|Araly1|936212|scaffold_500403.1
Length=514
Score = 462 bits (250), Expect = 1e-129
Identities = 411/485 (85%), Gaps = 26/485 (5%)
Strand=Plus/Plus
Query 1 ATGGCAAAGTCTTTTTC-CATGGTAATGCTTGTATCTATAATAATATTTTACATGGCTCG 59
||||||||||| ||||| |||||||||||| |||| ||| |||| |||| |||||||||
Sbjct 21 ATGGCAAAGTC-TTTTCTCATGGTAATGCTCATATCCATAGTAATGTTTTCCATGGCTCG 79
Query 60 TCCAATTTACTCTCGGAATAA---A---ATATT-AGAA--GAT---------A-TAGACA 100
||||||||| || | || || | ||||| | || ||| | |||||
Sbjct 80 TCCAATTTATTC-CCAAAAAATTGATCCATATTCACAAGGGATACCAAAAGAAGCAGACA 138
Query 101 TATCTCCAACTCCAGTGGAAGGAACTGATTCACCCACAACAGAATATGAGATAGAGCTTG 160
|||||||||||||| |||||| | |||||||||| ||||| |||| ||||||||||||||
Sbjct 139 TATCTCCAACTCCATTGGAAGTAGCTGATTCACCTACAACGGAATCTGAGATAGAGCTTG 198
Query 161 CTCACCGCTTACATGAAGATTATATTCTGGCTTGCCCTAAAAAGCCGAGTTCCAAATGCG 220
|||||| || ||| |||| |||||||| ||||||||||||||||||||| |||||||||
Sbjct 199 CTCACCATTTGCATAAAGAGTATATTCTTGCTTGCCCTAAAAAGCCGAGTCCCAAATGCG 258
Query 221 ATGATGAGATTTTCAATAACATGTTGGATGGGACGACGCCAGTGACAAATGAATGTTGTC 280
| |||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 259 AAGATGAGATTTTCAACAACATGTTGGATGAGACGACGCCAGTGACAGATGAATGTTGTC 318
Query 281 ATGATATATTGAAGACTGGCAAAGATTGTCACCTTGCATTGGTTAAAATCATATTCTCCA 340
|||| | ||||| |||||||||||||| ||||||||| |||| |||||||||||||| |
Sbjct 319 GTGATGTTTTGAATACTGGCAAAGATTGCCACCTTGCAATGGTAAAAATCATATTCTCTA 378
Query 341 CGA-ATGATTATaaaaaaaTTGCATCTAAGGCTATTCCAAAAAGTAAACAGACATGGAAT 399
| | |||| |||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 379 C-ATATGACTATAAAAATATTGCATCTAAGGCTATTCCAAAAAGTAAACAGGCATGGAAC 437
Query 400 GATTGTGTCCGTAGAGTTGGGATGGA-GATTGGTGCTCCGGTCTCTTTCGAACCTTAAAC 458
|||||| ||||||||||||| | | |||||||||||||||||||||||| || |||||
Sbjct 438 GATTGTATCCGTAGAGTTGGCAAC-ACGATTGGTGCTCCGGTCTCTTTCGAGCCGTAAAC 496
Query 459 CAATA 463
||||
Sbjct 497 TAATA 501
> Ahg936213 jgi|Araly1|936213|scaffold_500404.1
Length=469
Score = 459 bits (248), Expect = 1e-128
Identities = 330/370 (89%), Gaps = 4/370 (1%)
Strand=Plus/Plus
Query 96 AGACATATCTCCAACTCCAGTGGAAGGAACTGATTCACCCACAACAGAATATGAGATAGA 155
||||||||||||||||||| |||||| | |||||||||| ||||| |||| |||||||||
Sbjct 89 AGACATATCTCCAACTCCATTGGAAGTAGCTGATTCACCTACAACGGAATCTGAGATAGA 148
Query 156 GCTTGCTCACCGCTTACATGAAGATTATATTCTGGCTTGCCCTAAAAAGCCGAGTTCCAA 215
||||||||||| || ||| |||| |||||||| ||||||||||||||||||||| ||||
Sbjct 149 GCTTGCTCACCATTTGCATAAAGAGTATATTCTTGCTTGCCCTAAAAAGCCGAGTCCCAA 208
Query 216 ATGCGATGATGAGATTTTCAATAACATGTTGGATGGGACGACGCCAGTGACAAATGAATG 275
|||||| |||||||||||||| ||||||||||||| |||||||||||||||| |||||||
Sbjct 209 ATGCGAAGATGAGATTTTCAACAACATGTTGGATGAGACGACGCCAGTGACAGATGAATG 268
Query 276 TTGTCATGATATATTGAAGACTGGCAAAGATTGTCACCTTGCATTGGTTAAAATCATATT 335
||||| |||| | ||||| |||||||||||||| ||||||||| |||| |||||||||||
Sbjct 269 TTGTCGTGATGTTTTGAATACTGGCAAAGATTGCCACCTTGCAATGGTAAAAATCATATT 328
Query 336 CTCCACGA-ATGATTATaaaaaaaTTGCATCTAAGGCTATTCCAAAAAGTAAACAGACAT 394
||| || | |||| |||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 329 CTCTAC-ATATGACTATAAAAATATTGCATCTAAGGCTATTCCAAAAAGTAAACAGGCAT 387
Query 395 GGAATGATTGTGTCCGTAGAGTTGGGATGGA-GATTGGTGCTCCGGTCTCTTTCGAACCT 453
|||| |||||| ||||||||||||| | | |||||||||||||||||||||||| ||
Sbjct 388 GGAACGATTGTATCCGTAGAGTTGGCAAC-ACGATTGGTGCTCCGGTCTCTTTCGAGCCG 446
Query 454 TAAACCAATA 463
||||| ||||
Sbjct 447 TAAACTAATA 456
> Ahg936215 jgi|Araly1|936215|scaffold_500406.1
Length=514
Score = 448 bits (242), Expect = 3e-125
Identities = 328/370 (89%), Gaps = 4/370 (1%)
Strand=Plus/Plus
Query 96 AGACATATCTCCAACTCCAGTGGAAGGAACTGATTCACCCACAACAGAATATGAGATAGA 155
||||||||||||||||||| |||||| | |||||||||| ||||| |||| |||||||||
Sbjct 134 AGACATATCTCCAACTCCATTGGAAGTAGCTGATTCACCTACAACGGAATCTGAGATAGA 193
Query 156 GCTTGCTCACCGCTTACATGAAGATTATATTCTGGCTTGCCCTAAAAAGCCGAGTTCCAA 215
||||||||||| || ||| |||| |||||||| ||||||||||||||||||||| ||||
Sbjct 194 GCTTGCTCACCATTTGCATAAAGACTATATTCTTGCTTGCCCTAAAAAGCCGAGTCCCAA 253
Query 216 ATGCGATGATGAGATTTTCAATAACATGTTGGATGGGACGACGCCAGTGACAAATGAATG 275
|||||| |||||||||||||| ||||||||||||| |||||||||||||||| |||||||
Sbjct 254 ATGCGAGGATGAGATTTTCAACAACATGTTGGATGAGACGACGCCAGTGACAGATGAATG 313
Query 276 TTGTCATGATATATTGAAGACTGGCAAAGATTGTCACCTTGCATTGGTTAAAATCATATT 335
||||| |||| | ||||| |||||||||||||| || || ||| |||| |||||||||||
Sbjct 314 TTGTCGTGATGTTTTGAATACTGGCAAAGATTGCCATCTCGCAATGGTAAAAATCATATT 373
Query 336 CTCCACGA-ATGATTATaaaaaaaTTGCATCTAAGGCTATTCCAAAAAGTAAACAGACAT 394
||| || | |||| |||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 374 CTCTAC-ATATGACTATAAAAATATTGCATCTAAGGCTATTCCAAAAAGTAAACAGGCAT 432
Query 395 GGAATGATTGTGTCCGTAGAGTTGGGATGGA-GATTGGTGCTCCGGTCTCTTTCGAACCT 453
|||| |||||| ||||||||||||| | | |||||||||||||||||||||||| ||
Sbjct 433 GGAACGATTGTATCCGTAGAGTTGGCAAC-ACGATTGGTGCTCCGGTCTCTTTCGAGCCG 491
Query 454 TAAACCAATA 463
||||| ||||
Sbjct 492 TAAACTAATA 501
> Ahg936209 jgi|Araly1|936209|scaffold_500400.1
Length=514
Score = 420 bits (227), Expect = 7e-117
Identities = 324/371 (87%), Gaps = 6/371 (2%)
Strand=Plus/Plus
Query 96 AGACATATCTCCAACTCCAGTGGAAGGAACTGATTCACCCACAACAGAATATGAGATAGA 155
||||||||||||||||||| |||||| | |||||||||| ||||| |||| |||||||||
Sbjct 134 AGACATATCTCCAACTCCATTGGAAGTAGCTGATTCACCTACAACGGAATCTGAGATAGA 193
Query 156 GCTTGCTCACCGCTTACATGAAGATTATATTCTGGCTTGCCCTAAAAAGCCGAGTTCCAA 215
||||||||||| || ||| |||| |||||||| ||||||||||||||||||||| ||||
Sbjct 194 GCTTGCTCACCATTTGCATAAAGACTATATTCTTGCTTGCCCTAAAAAGCCGAGTCCCAA 253
Query 216 ATGCGATGATGAGATTTTCAATAACATGTTGGATGGGACGACGCCAGTGACAAATGAATG 275
|||||| |||||||||||||| ||||||||||||| ||||| |||| ||||| |||||||
Sbjct 254 ATGCGAAGATGAGATTTTCAACAACATGTTGGATGAGACGATGCCAATGACAGATGAATG 313
Query 276 TTGTCATGATATATTGAAGACTGGCAAAGATTGTCACCTTGC-ATTGGTTAAAATCATAT 334
||||| |||| ||||||| |||||||||||||| || || || | |||||||||||||||
Sbjct 314 TTGTCGTGATGTATTGAATACTGGCAAAGATTGCCATCTCGCGA-TGGTTAAAATCATAT 372
Query 335 TCTCCACGAATGATTATaaaaaaaTTGCATCTAAGGCTATTCCAAAAAGTAAACAGACAT 394
|||| || || || |||||||| |||||||||||||||||||||||||||||| || |||
Sbjct 373 TCTCTACAAAAGACTATAAAAATATTGCATCTAAGGCTATTCCAAAAAGTAAAAAGGCAT 432
Query 395 GGAATGATTGTGTCCGTAGAGTTGGGATGGAGA-TTGGTGCTCCGGTCTCTTTCGAACCT 453
|||| |||||| |||||||||| || | | | | ||||||||||| |||||||||| | |
Sbjct 433 GGAACGATTGTATCCGTAGAGTCGGCA-GCAAAATTGGTGCTCCGATCTCTTTCGAGC-T 490
Query 454 -TAAACCAATA 463
||||| ||||
Sbjct 491 GTAAACTAATA 501
> Ahg322690 jgi|Araly1|322690|fgenesh1_pm.C_scaffold_5000234
Length=444
Score = 372 bits (201), Expect = 2e-102
Identities = 273/308 (89%), Gaps = 4/308 (1%)
Strand=Plus/Plus
Query 151 ATAGAGCTTGCTCACCGCTTACATGAAGATTATATTCTGGCTTGCCCTAAAAAGCCGAGT 210
|||||||||||||||| || ||| |||| |||||||| |||||||||||||||||||||
Sbjct 139 ATAGAGCTTGCTCACCATTTGCATAAAGACTATATTCTTGCTTGCCCTAAAAAGCCGAGT 198
Query 211 TCCAAATGCGATGATGAGATTTTCAATAACATGTTGGATGGGACGACGCCAGTGACAAAT 270
|||||||||| |||||||||||||| ||||||||||||| |||||||||||||||| ||
Sbjct 199 CCCAAATGCGAAGATGAGATTTTCAACAACATGTTGGATGAGACGACGCCAGTGACAGAT 258
Query 271 GAATGTTGTCATGATATATTGAAGACTGGCAAAGATTGTCACCTTGCATTGGTTAAAATC 330
|||||||||| |||| | ||||| |||||||||||||| || || ||| |||| ||||||
Sbjct 259 GAATGTTGTCGTGATGTTTTGAATACTGGCAAAGATTGCCATCTCGCAATGGTAAAAATC 318
Query 331 ATATTCTCCACGA-ATGATTATaaaaaaaTTGCATCTAAGGCTATTCCAAAAAGTAAACA 389
|||||||| || | |||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 319 ATATTCTCTAC-ATATGACTATAAAAATATTGCATCTAAGGCTATTCCAAAAAGTAAACA 377
Query 390 GACATGGAATGATTGTGTCCGTAGAGTTGGGATGGA-GATTGGTGCTCCGGTCTCTTTCG 448
| ||||||| |||||| ||||||||||||| | | |||||||||||||||||||||||
Sbjct 378 GGCATGGAACGATTGTATCCGTAGAGTTGGCAAC-ACGATTGGTGCTCCGGTCTCTTTCG 436
Query 449 AACCTTAA 456
| || |||
Sbjct 437 AGCCGTAA 444
> Ahg928921 jgi|Araly1|928921|scaffold_301378.1
Length=562
Score = 300 bits (162), Expect = 9e-81
Identities = 303/368 (82%), Gaps = 21/368 (6%)
Strand=Plus/Plus
Query 110 CTCCAGTGGAAGGAA-CTGATTCACCCACAACAGAATATGAGATAGAGCTTGCTCACCGC 168
||||| | ||| ||| ||| ||||||| ||| |||||||| || |||||||||||||
Sbjct 185 CTCCATTCGAA-GAAGCTGGTTCACCCGCAATGGAATATGACATGGAGCTTGCTCACC-A 242
Query 169 TTA----CA-TGA-AGAT-TATATTCT---GGCTTGCCCTAAAAAGCCGAG-TTCCAAAT 217
||| || | || | || |||| ||||||| || |||||||||| | ||||
Sbjct 243 TTACTCGCACAAACAGCTCGATTTTCTCCAGGCTTGCGCTGAAAAGCCGAGCGT-AAAAT 301
Query 218 GC-GATGATGAGATTTTCAATAACATGTTGGATGGGACGACGCCAGTGACAAATGAATGT 276
|| || |||||| ||||||| ||||||||||||| ||| |||||| | ||| ||||||||
Sbjct 302 GCGGA-GATGAGGTTTTCAAGAACATGTTGGATGAGACTACGCCAATTACAGATGAATGT 360
Query 277 TGTCATGATATATTGAAGACT-GGCAAAGATTGTCACCTTGCATTGGTTAAAATCATATT 335
|||| |||||||||||||| | |||||||||||||| || | ||||||||||||||||||
Sbjct 361 TGTCGTGATATATTGAAGA-TGGGCAAAGATTGTCATCTCGGATTGGTTAAAATCATATT 419
Query 336 CTCCACGAATGATTATaaaaaaaTTGCATCTAAGGCTATTCCAAAAAGTAAACAGACATG 395
| ||||| |||| ||||| || ||||||||||||| ||||||||| |||||||| |||||
Sbjct 420 CGCCACGTATGAATATAAGAATATTGCATCTAAGGGTATTCCAAATAGTAAACAAACATG 479
Query 396 GAATGATTGTGTCCGTAGAGTTGGGATGGA-GATTGGTGCTCCGGTCTCTTTCGAACCTT 454
|||||||||||||||||||||||||| | | ||||||||||||||| ||||| || | |
Sbjct 480 GAATGATTGTGTCCGTAGAGTTGGGA-GCAAGATTGGTGCTCCGGTTTCTTTGGAGCAGT 538
Query 455 AAACCAAT 462
|||| |||
Sbjct 539 AAACTAAT 546
> Ahg913770 jgi|Araly1|913770|Al_scaffold_0001_4024
Length=405
Score = 255 bits (138), Expect = 2e-67
Identities = 222/262 (85%), Gaps = 8/262 (3%)
Strand=Plus/Plus
Query 189 GGCTTGCCCTAAAAAGCCGAGTTCCAAATGC-GATGATGAGATTTTCAATAACATGTTGG 247
||||||| || | |||||||| | |||||| || ||||| ||||||| ||||||||||
Sbjct 138 GGCTTGCGCTGACAAGCCGAGCACAAAATGCGGA-AATGAGGTTTTCAAGAACATGTTGG 196
Query 248 ATGGGACGACGCCAGTGACAAATGAATGTTGTCATGATATATTGAAGACT-GGCAAAGAT 306
||| |||||||||| | ||| ||| |||||||| |||||||||||||| | || ||||||
Sbjct 197 ATGAGACGACGCCAATTACAGATGCATGTTGTCGTGATATATTGAAGA-TGGGAAAAGAT 255
Query 307 TGTCACCTTGCATTGGTTAAAATCATATTCTCCACGAATGA-TTATaaaaaaaTTGCATC 365
|| || |||| ||||||| ||||||||||| ||||| |||| || ||| || || ||||
Sbjct 256 TGCCATCTTGGATTGGTTCAAATCATATTCGCCACGTATGAGTT-TAAGAATTTTTCATC 314
Query 366 TAAGGCTATTCCAAAAAGTAAACAGACATGGAATGATTGTGTCCGTAGAGTTGGGATGGA 425
||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 315 TAAGGGTATTCCGAAAAGTAAACAAACATGGAATGATTGTGTCCGTAGAGTTGGGAACAA 374
Query 426 GATTGGTGCTCCGG-TCTCTTT 446
|||||||||||||| | |||||
Sbjct 375 GATTGGTGCTCCGGAT-TCTTT 395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22683135615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5