BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04032.1
Length=1342
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484307 jgi|Araly1|484307|fgenesh2_kg.5__299__AT2G04032.1 1827 0.0
Ahg936189 jgi|Araly1|936189|scaffold_500380.1 667 0.0
Ahg330887 jgi|Araly1|330887|fgenesh1_pm.C_scaffold_8000230 110 4e-23
> Ahg484307 jgi|Araly1|484307|fgenesh2_kg.5__299__AT2G04032.1
Length=1317
Score = 1827 bits (989), Expect = 0.0
Identities = 1230/1342 (92%), Gaps = 33/1342 (2%)
Strand=Plus/Plus
Query 1 AAG-TTTCATTTTTTGTGTTACAATCTTTATAAATTTGAGACGAAATTATTTTCTCCTAT 59
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGTTTTC-TTTTTTGTGTTACAATCTTTATAAATTTGAGACGAAATTATTTTCTCCTAT 59
Query 60 AGTCTTCATCGCAAAAATAAACAGTTAAGAAAGCTTTCTTTTCACTTTCTCCAATGGCTT 119
||||||||| || ||| | || ||||| |||||||| |||||||||
Sbjct 60 AGTCTTCATTGC------AAA-A-TT-------CTTTC----CACTTTCTGCAATGGCTT 100
Query 120 ATTCTAAAGCATGTTATAAACTCACCACCATTACAATTCTTCTTCTATCCTTCACA-TTA 178
||||||||| ||||||||||||| ||||||||| |||| ||||||||||||||| |||
Sbjct 101 CTTCTAAAGCTTGTTATAAACTCATAACCATTACAGTTCTCCTTCTATCCTTCACATTTA 160
Query 179 CCCTCTCTTGCCGGTAACGCTGAAAACGCAGATGTAAGTGAATGCAAAGCTGAATCTGGA 238
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 161 -CCTCTCTTGCCGGTAACGCTGAAAACGCAGATGTTAGTGAATGCAAAGCTGAATCTGGA 219
Query 239 GATCTATCATGTCACAACAACAAAGAAGCACAAAAGCTTAAAATCATTGCAATCCCATCT 298
|||| || ||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 220 GATCCATTATGTCACAACAACAAAGAAGCGCAAAAGCTTAAAATCATAGCAATCCCATCG 279
Query 299 ATCTTAGTGGCGAGCATGATCGGTGTTTCTTTACCGTTGTTTTCTCGTTCCATTCCTGCT 358
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 280 ATCTTAGTGGCGAGCATGATCGGTGTTTCTTTACCGTTGTTAACTCGTTCCATTCCTGCT 339
Query 359 TTAGGACCCGATCGAGAAATGTCTGTGATCGTTAAGACTTTAGCTTCGGGTGTAATTCTG 418
||||||||||| ||||| |||| |||| |||||||| ||||||||||||||||||| ||
Sbjct 340 TTAGGACCCGACCGAGATATGTTTGTGCTCGTTAAGTGTTTAGCTTCGGGTGTAATTTTG 399
Query 419 GCAACCGGTTTTATGCATGTGTTACCGGACTCTTTCGATGATCTCACATCCAAATGTTTG 478
|||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||
Sbjct 400 GCAACCGGTTTTATGCATGTATTACCGGACTCTGTGGATGATCTCACATCCAAATGTTTG 459
Query 479 CCTGAAGACCCGTGGCA-GAAGTTTCCTTTC-GCCACTTTCATCACGATGATCTCGGCTT 536
|||||||| |||||| | ||||||||||||| | |||||||||| | ||| |||||||||
Sbjct 460 CCTGAAGATCCGTGG-AGGAAGTTTCCTTTCAG-CACTTTCATCGCCATGGTCTCGGCTT 517
Query 537 TGCTCGTTTTAATGATTGAATCGTTTGCGATGTGTGCGTATGCGAGGAGAACTAGTAAGC 596
|| |||||||||||||||| || ||||||||| |||||||||||||||||||||||||||
Sbjct 518 TGATCGTTTTAATGATTGATTCATTTGCGATGAGTGCGTATGCGAGGAGAACTAGTAAGC 577
Query 597 GTGAAGGAGAAGTCGTACCGTTAGAAAATGGATCTAATTCTGTGGATACACAAAACGACA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 578 GTGAAGGAGAAGTCGTACCGTTAGAAAATGGATCTAATTCTGTGGATACACAAGATGAGA 637
Query 657 TCCAAACCCTAGAAAATGGATCTAGTTATGTGGAGAAACAAGAAAAGGTCAACGA-AGAT 715
|||||||||||||||||||||||| || |||||| |||||||||||||||||||| | ||
Sbjct 638 TCCAAACCCTAGAAAATGGATCTAATTCTGTGGATAAACAAGAAAAGGTCAACGATA-AT 696
Query 716 AAGACAAGTGAACTTCTTAGGAATAAAGTCATTGCTCAGATATTGGAACTAGGTATCGTA 775
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 AAGACAAGTCAACTTCTTAGGAATAAAGTCATTGCTCAGATATTGGAACTAGGTATCGTA 756
Query 776 GTTCACTCGGTTGTGATCGGTCTTGCTATGGGGGCTTCTGATAACAAATGTACCGTACAA 835
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||| |
Sbjct 757 GTTCACTCGGTTGTGATCGGTCTTGCTATGGGGGCTTCAGATAACCAATGTACCATACGA 816
Query 836 TCACTCATCGCAGCGCTTTGTTTCCATCAACTCTTTGAAGGAATGGGACTCGGTGGTTCC 895
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 817 TCACTTATCGCAGCGCTTTGTTTCCATCAACTTTTTGAAGGAATGGGACTCGGTGGTTCC 876
Query 896 ATCTTACAAGCGCAATTTAAAAGCAAAACAAATTGGACAATGGTGTTTTTCTTTTCGGTC 955
|| |||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 877 ATTTTACAAGCACAATTTAAAAGCAAAACGAATTGGATGATGGTGTTTTTCTTTTCGGTC 936
Query 956 ACAACACCATTTGGGATTGTTTTAGGGATGGCCATACAAAAGATATATGATGAGACAAGT 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 ACAACACCATTTGGGATTGTTTTAGGGATGGCCATACAAAAGATATATGATGAGACAAGT 996
Query 1016 CCAACTGCGTTGATCGTTGTGGGGGTCTTGAATGCGTGCTCTGCAGGATTGTTGATTTAT 1075
|| || |||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 997 CCGACCGCGTTGATAGTGGTGGGGGTCTTGAATGCGTGCTCTGCAGGATTATTGATTTAT 1056
Query 1076 ATGGCCCTTGTTAATCTCTTGGCTCATGAATTCTTCGGACCAAAGATACAAGGGAATATT 1135
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1057 ATGGCACTTGTTAATCTCTTGGCTCATGAATTCTTCGGACCAAAGATACAAGGGAACATG 1116
Query 1136 AAACTTCATGTCCTCGGTTATGTTGCTACCTTCACAGGTGCCGCAGGAATGTCTTTGATG 1195
|| |||||| ||||||||||||||||| ||| | |||||| | || |||| ||||||||
Sbjct 1117 AAGCTTCATATCCTCGGTTATGTTGCTGTCTTTATAGGTGCTGGAGCAATGACTTTGATG 1176
Query 1196 GCTAAGTGGGCATAGAACTCTTGAGTTAGACTCATCTTT-ACTTCTGTCCTTCACTTTGA 1254
|| |||||||||||||| ||||||||||||||||||||| |||||| || ||||||||||
Sbjct 1177 GCCAAGTGGGCATAGAAGTCTTGAGTTAGACTCATCTTTTACTTCTATCATTCACTTTGA 1236
Query 1255 TTTTCGATCATTGGTACAATAAAATCTTGTACT-ATTTTGTTTTGCACAATTGCTTTT-A 1312
|||||||| ||||||| || ||| ||||||| | |||||| ||||||||||||||||| |
Sbjct 1237 TTTTCGATTATTGGTAGAACAAATTCTTGTA-TGATTTTGGTTTGCACAATTGCTTTTTA 1295
Query 1313 TTTGTGGAATGAAGTTTGAATT 1334
||||||||||||||||||||||
Sbjct 1296 TTTGTGGAATGAAGTTTGAATT 1317
> Ahg936189 jgi|Araly1|936189|scaffold_500380.1
Length=1063
Score = 667 bits (361), Expect = 0.0
Identities = 499/561 (89%), Gaps = 27/561 (5%)
Strand=Plus/Plus
Query 95 TTCTTTTCACTTTCTCCAATGGCTTATTCTAAAGCATGTTATAAACTCAC-CACCATTAC 153
||||||||||||||| ||||||||| ||||||||| |||||||||||| | ||||||||
Sbjct 3 TTCTTTTCACTTTCTTCAATGGCTTCTTCTAAAGCTTGTTATAAACTC-CTTACCATTAC 61
Query 154 AATTCTTCTTCTATCCTTCAC-ATTACCCTCTCTTGCCGGTAACGCTGAAAACGCAGATG 212
|||||| ||||| |||||||| |||| ||||||||||||||||||| || ||||||| |
Sbjct 62 AATTCTCCTTCTCTCCTTCACAATTA-CCTCTCTTGCCGGTAACGCCGAGTACGCAGACG 120
Query 213 TAAGTGAATGCAAAGCTGAATCTGGAGATCTATCATGTCACAACAACAAAGA-AGCACAA 271
|||| ||||||| ||| ||||||||||||| ||||||||||||||||||| | |||||||
Sbjct 121 TAAGCGAATGCAGAGCGGAATCTGGAGATCCATCATGTCACAACAACAAA-ATAGCACAA 179
Query 272 AAGCTTAAAATCATTGCAATCCCATCTATCTTAGTGGCGAGCATGATCGGTGTTTCTTTA 331
||| ||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 180 AAGTTTAAACTCATTGCAATCCCATCGATCTTAGTGGCGAACATGATCGGTGTTTCTTTA 239
Query 332 CCGTTGTTTTCTCGTTCCATTCCTGCTTTAGGACCCGATCGAGAAATGTCTGTGATCGTT 391
|||||| ||||||||| |||||||| |||||||||||| ||||| |||| ||||||||||
Sbjct 240 CCGTTGCTTTCTCGTTTCATTCCTGTTTTAGGACCCGACCGAGATATGTTTGTGATCGTT 299
Query 392 AAGACTTTAGCTTCGGGTGTAATTCTGGCAACCGGTTTTATGCATGTGTTACCGGACTCT 451
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 AAGACTTTAGCTTCGGGTGTAATTTTGGCAACCGGTTTTATGCATGTGTTACCGGACTCT 359
Query 452 TTCGATGATCTCACATCCAAATGTTTGCCTGAAGA-CCCGTGGCAG-AAGTTTCCTTTC- 508
| |||||||||||| |||||||||||||||||||| ||| ||| || ||||||||||||
Sbjct 360 TACGATGATCTCACGTCCAAATGTTTGCCTGAAGAGCCC-TGG-AGGAAGTTTCCTTTCA 417
Query 509 GCCACTTTCATCACGATGATCTCGGCTTTGCTCGTTTTAATGATTGAATCGTTTGCGATG 568
|| ||||||||| ||| | ||||||||||||||| |||||||||||| |||| |||
Sbjct 418 GC-ACTTTCATCGCGACGGTCTCGGCTTTGCTCGCTTTAATGATTGATTCGT-----ATG 471
Query 569 TGTGCGTATGCGAGGAGAACTAGTAAGCGTGAAGGAGAAGTCGTACCGTTAGAAAATGGA 628
|| | |||| | | ||||||||||||||||||||| |||||| ||||||||||||
Sbjct 472 ----CG-A--CGAG-A-A-CTAGTAAGCGTGAAGGAGAAGCCGTACCATTAGAAAATGGA 521
Query 629 TCTAATTCTGTGGATACACAA 649
|||||| ||||||||||||||
Sbjct 522 TCTAATCCTGTGGATACACAA 542
Score = 628 bits (340), Expect = 2e-179
Identities = 495/568 (87%), Gaps = 18/568 (3%)
Strand=Plus/Plus
Query 666 TAGAAAATGGATCTAGTTATGTGGAGAAACAAGAAAAGGTCAACGAAGATAAGACAAGTG 725
||||||||||||||| | |||||| | |||||||||||||||||| ||||||||||||
Sbjct 511 TAGAAAATGGATCTAATCCTGTGGATACACAAGAAAAGGTCAACGATGATAAGACAAGTC 570
Query 726 AACTTCTTAGGAATAAAGTCATTGCTCAGATATTGGAACTAGGTATCGTAGTTCACTCGG 785
||||||||||||||| |||||||||| | | | |||||||||||||||||||||||| |
Sbjct 571 AACTTCTTAGGAATAGAGTCATTGCTTTGGTGTCGGAACTAGGTATCGTAGTTCACTC-G 629
Query 786 TT-GTGATCGGTCTTGCTATGGGGGCTTCTGATAACAAATGTACCGTACAATCACTCATC 844
|| |||| |||||| |||||||||||||| |||||| |||||||| ||| |||||| |||
Sbjct 630 TTCGTGACCGGTCTCGCTATGGGGGCTTCAGATAACCAATGTACCATACGATCACTTATC 689
Query 845 GCAGCGCTTTGTTTCCATCAACTCT-TTGAAGGAATGGGACTCGGTGGTTCCATCTTACA 903
||||||||||||||||||||||| | ||||||||||| |||||||||||||||| |||||
Sbjct 690 GCAGCGCTTTGTTTCCATCAACT-TGTTGAAGGAATGAGACTCGGTGGTTCCATTTTACA 748
Query 904 AGCGCAATTTAAAAGCAAAACAAATTGGACAATGGTGTTTTTCTTTTCGGTCACAACACC 963
||| |||| |||||||||| ||||||| ||||||||||| |||| ||||||||||||
Sbjct 749 GGCGGAATTGAAAAGCAAAATGAATTGGATAATGGTGTTTTCCTTTCCGGTCACAACACA 808
Query 964 ATTTGGGATTGTTTTAGGGATGGCCATACAAAAGATATATGATGAGACAAGTCCAAC-TG 1022
| ||||||| | ||||||||||| ||||| ||||||||||||||||||||||| || |
Sbjct 809 AGTTGGGATAGCTTTAGGGATGGAAATACACAAGATATATGATGAGACAAGTCCGACAT- 867
Query 1023 CGTTGATCGTTGTGGGGGTCTTGAATGCGTGCTCTGCAGGATTGTTGATTTATATGGCCC 1082
|||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 868 CGTTGATCGTAGTGGGGGTCTTGAATGCGTGTTCTGCAGGATTATTGATTTATATGGCAC 927
Query 1083 TTGTTAATCTCTTGGCTCATGAATTCTTCGGACCAAAGATACAAGGGAATATTAAACTTC 1142
||||||||||||||||||||||||||||||||| || ||| | || ||| | ||
Sbjct 928 TTGTTAATCTCTTGGCTCATGAATTCTTCGGAC----GAC-CAAAG-AAGATTCA--TT- 978
Query 1143 ATGTCCTCGGTTATGTTGCTACCTTCACAGGTGCCGCAGGAATGTCTTTGATGGCTAAGT 1202
| ||| |||||||||||| ||| | ||||| | |||||||||||| ||||||||||
Sbjct 979 -T--CCTAGGTTATGTTGCTGTCTTTATAGGTGGTGGAGGAATGTCTTTAATGGCTAAGT 1035
Query 1203 GGGCATAGAACTCTTGAGTTAGACTCAT 1230
||||||||||||||||||||||||||||
Sbjct 1036 GGGCATAGAACTCTTGAGTTAGACTCAT 1063
> Ahg330887 jgi|Araly1|330887|fgenesh1_pm.C_scaffold_8000230
Length=1029
Score = 110 bits (59), Expect = 4e-23
Identities = 233/315 (74%), Gaps = 20/315 (6%)
Strand=Plus/Plus
Query 839 CTCATCGCAGCGCTTTGTTTCCATCAACTCTTTGAAGGAATGGGACTCGGTGGTTCCATC 898
||||| ||||| ||||| ||||||||| | |||||||| ||||| || || |||| ||||
Sbjct 658 CTCATTGCAGCTCTTTGCTTCCATCAAATGTTTGAAGGCATGGGTCTTGGAGGTTGCATC 717
Query 899 TTACAAGCGCAATTTA-AA-AGCAAAACAAATTGGACAATGGTGTT-TTTCTTTTCGGTC 955
| || ||| ||| || || | ||| || || | |||| || ||| || ||||
Sbjct 718 CTCCAGGCGGAATATACAACTGTGAAA-AAGTT-CATGATGGCCTTCTTT-TTCGCGGTT 774
Query 956 ACAACACCATTTGGGATTGTTTTAGGGATGGCCATACAAAAG-ATATATGATG-AGA-CA 1012
||||||||||||||||||||||||||||| || || || || ||| | | | | ||
Sbjct 775 ACAACACCATTTGGGATTGTTTTAGGGATTGC-ATTGTCGAGCATTTAT-AGGGATAACA 832
Query 1013 AGTCCAACTGCGTTGATCGTTGTGGGGGT-CTTGAATGCGTGCTCTGCAGGATTG-TTGA 1070
| || || ||||||||| ||| ||| | || ||||| |||||||||||| || || |
Sbjct 833 -GCCCGACCGCGTTGATCACTGTCGGGCTGCTC-AATGCCTGCTCTGCAGGACTGCTT-A 889
Query 1071 TTTATATGGCCCTTGTTAATCT-CTTG-GCTCATGAATTCTTCGGACCAAAGATACAAGG 1128
| || |||||||| ||| | || || | | | ||| ||| | ||||||||| | |||||
Sbjct 890 TCTACATGGCCCTCGTTGACCTTCTAGCGG-C-TGAGTTCATGGGACCAAAGCTCCAAGG 947
Query 1129 GAATATTAAACTTCA 1143
|| || || |||||
Sbjct 948 CAACATCAAGCTTCA 962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50207881689
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5