BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04034.1
Length=279
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936207 jgi|Araly1|936207|scaffold_500398.1 268 1e-71
Ahg936205 jgi|Araly1|936205|scaffold_500396.1 222 9e-58
> Ahg936207 jgi|Araly1|936207|scaffold_500398.1
Length=319
Score = 268 bits (145), Expect = 1e-71
Identities = 235/278 (85%), Gaps = 8/278 (3%)
Strand=Plus/Plus
Query 1 ATGGCGTCTAGAGCAACATCACTTTTCATCTTCTTCTTTCTCATCTCTTGCACATTCATG 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 24 ATGGCGTCTAGAGCAACATCACTTTTCATCTTTTTCTTTCTCATCTCTTGCACTTTCATG 83
Query 61 TTGCTTGAAACCAATGCATCAAAAAATAAGTCTCGTAGCGATCTTCCATTGTGTGGATTT 120
|||||||||||||||||||||| ||||||| || ||||| || ||||| |||| ||||||
Sbjct 84 TTGCTTGAAACCAATGCATCAAGAAATAAGCCTAGTAGCAATATTCCACTGTGCGGATTT 143
Query 121 AGAGA-ACATTGTGATGGCCTATGGTGTCCTGGAGAAGGAGGAAA--ATATTCATGTATC 177
| | | |||||| |||| |||||||||||| | || |||||| ||| | ||||||
Sbjct 144 AAACTTA-ATTGTGGTGGCATATGGTGTCCTGAAAAAATAGGAAAGCATAA-C-TGTATC 200
Query 178 AATTGGTCTTGTAACTTTATTGAAGATTGTGAGAAGCGTATCCGCTGCGAAAAAACAGGA 237
| ||| ||||| |||||| |||||||||||| ||| | | || |||||||||||||||
Sbjct 201 AGGTGGGCTTGTGACTTTAGTGAAGATTGTGACAAGTTTGTTCGTTGCGAAAAAACAGGA 260
Query 238 CCTTGTT-GTTTCGATGGATTATGCGATTGTACTAATT 274
||| ||| || | || ||| ||||| ||||||||||||
Sbjct 261 CCT-GTTTGTATGGAGGGAATATGCAATTGTACTAATT 297
> Ahg936205 jgi|Araly1|936205|scaffold_500396.1
Length=450
Score = 222 bits (120), Expect = 9e-58
Identities = 228/278 (82%), Gaps = 15/278 (5%)
Strand=Plus/Plus
Query 1 ATGGCGTCTAGAGCAACATCACTTTTCATCTTCTTCTTTCTCATCTCTTGCACATTCATG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 30 ATGGCGTCTAGAGCAACATCACTTTTCATCTTCTTCTTTCTCATCTCTTGCACTTTCATG 89
Query 61 TTGCTTGAAACCAATGCATCAAAAAATAAGTC-TCGTAGCGATCTTCCATTGTGTGGATT 119
|||||||||||||||||||||| |||| || | | ||||| ||||||||||||| |||
Sbjct 90 TTGCTTGAAACCAATGCATCAAGAAATGAG-CATAGTAGCAATCTTCCATTGTGCACATT 148
Query 120 TAGAGA-ACATTGT-GATGGCCTATGGTGTCCTGGAGAAGGAGGAAA--ATATTCATGTA 175
| | | ||||| | |||| |||||||||||| | || || ||| ||| | ||||
Sbjct 149 CAAACTTA-ATTGTAG-TGGCATATGGTGTCCTGAAAAAATAGAAAAGCATAA-C-TGTA 204
Query 176 TCAATTGGTCTTGTAACTTTATTGAAGATTGTGAGAAGCGTATCCGCTGCGAAAAAA--- 232
||| ||| ||||| ||||| |||||||||||| ||| | | || ||||||||||
Sbjct 205 TCAGGTGGACTTGTGGCTTTAGTGAAGATTGTGACAAGTTTGTTCGTTGCGAAAAAAATG 264
Query 233 CAGGACCTTGTT-GTTTCGATGGATTATGCGATTGTAC 269
|||||||| ||| |||| || ||| ||||| |||||||
Sbjct 265 CAGGACCT-GTTTGTTTTGAGGGAATATGCAATTGTAC 301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9729675195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5